jgi.p|Nanoce1779_2|591641, mRNA_5177 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591641
Unique NamemRNA_5177
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1165
Alignment locationscaffold_12:654466..655630 +

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Properties
Property NameValue
TranscriptId591727
TrackFilteredModels2
ProteinId591641
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:654466..655630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591641gene_5177Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591641mRNA_5177-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5177CDS_5177Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5177 ID=mRNA_5177|Name=jgi.p|Nanoce1779_2|591641|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
AGGCAATGCCACAACATGTGCTTGCTTGAATGGGCAGCTGCTCGAACCAG
TAGCCAAAAGCAGAAAGGTCCTCCGACCTCCCACCCCGGTCATGCCGTCC
GTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGAGGAGGCGTA
CGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAGCCGCCATTC
GGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGCTTTCCCCGC
CGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGCGTCGACGGC
ATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAGTCGTTACGG
AGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGAGGGGCCGTT
TGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGCGCTACCACC
CTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAATTGTACGAAT
CAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCGGACGGTGAG
GCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCTGTCGTCGAC
GGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGGTGATGTATG
TGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATATGCTGTGACG
AATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCATGCGTCATT
GTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCTTGACGGGGG
CGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTTGCCGGTGGG
TTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCCGCATTGGGA
AGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGCATGGTATGC
CTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGCTTGGGGTTT
TTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGCGGGGGAGAA
CGAAGAGGAAGGCTGATAAAGGATTGCATGTACTTATAAGAAGAAGCGGC
TTGCCGGTAAAGTTTGTAACCAAGCAGCTTTAAAGTAAATCAATTGCATG
GACTCGCCTGGTGAA
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protein sequence of jgi.p|Nanoce1779_2|591641

>mRNA_5177-protein ID=mRNA_5177-protein|Name=jgi.p|Nanoce1779_2|591641|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPSVPATAPPSTSKAQEEAYDDDGALTEAGLVRAAIRSSISIYRSILFGS
FPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHG
GAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDP
DGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRY
AVTNVWGGTAFAHSLAHASLFGSFEVMKDALLFLTGARHEEPLGVAMVGL
AGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTS
LGFLAWEYGRSQVLRQAGENEEEG*
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mRNA from alignment at scaffold_12:654466..655630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5177 ID=mRNA_5177|Name=jgi.p|Nanoce1779_2|591641|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_12:654466..655630+ (Nannochloropsis oceanica)
AGGCAATGCCACAACATGTGCTTGCTTGAATGGGCAGCTGCTCGAACCAG
TAGCCAAAAGCAGAAAGGTCCTCCGACCTCCCACCCCGGTCATGCCGTCC
GTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGAGGAGGCGTA
CGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAGCCGCCATTC
GGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGCTTTCCCCGC
CGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGCGTCGACGGC
ATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAGTCGTTACGG
AGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGAGGGGCCGTT
TGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGCGCTACCACC
CTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAATTGTACGAAT
CAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCGGACGGTGAG
GCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCTGTCGTCGAC
GGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGGTGATGTATG
TGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATATGCTGTGACG
AATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCATGCGTCATT
GTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCTTGACGGGGG
CGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTTGCCGGTGGG
TTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCCGCATTGGGA
AGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGCATGGTATGC
CTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGCTTGGGGTTT
TTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGCGGGGGAGAA
CGAAGAGGAAGGCTGATAAAGGATTGCATGTACTTATAAGAAGAAGCGGC
TTGCCGGTAAAGTTTGTAACCAAGCAGCTTTAAAGTAAATCAATTGCATG
GACTCGCCTGGTGAA
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Coding sequence (CDS) from alignment at scaffold_12:654466..655630+

>mRNA_5177 ID=mRNA_5177|Name=jgi.p|Nanoce1779_2|591641|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_12:654466..655630+ (Nannochloropsis oceanica)
ATGCCGTCCGTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGA
GGAGGCGTACGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAG
CCGCCATTCGGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGC
TTTCCCCGCCGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGC
GTCGACGGCATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAG
TCGTTACGGAGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGA
GGGGCCGTTTGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGC
GCTACCACCCTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAAT
TGTACGAATCAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCG
GACGGTGAGGCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCT
GTCGTCGACGGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGG
TGATGTATGTGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATAT
GCTGTGACGAATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCA
TGCGTCATTGTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCT
TGACGGGGGCGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTT
GCCGGTGGGTTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCC
GCATTGGGAAGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGC
ATGGTATGCCTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGC
TTGGGGTTTTTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGC
GGGGGAGAACGAAGAGGAAGGCTGA
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Synonyms
Publications