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Properties
| Property Name | Value |
|---|
| TranscriptId | 591724 |
| Track | FilteredModels2 |
| ProteinId | 591638 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:652130..654355 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5176 ID=mRNA_5176|Name=jgi.p|Nanoce1779_2|591638|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
CAGTAACGGAAGGGGCCTCCTGCGGAGCAAAATTGACTCCCACAATTCAC
ACACCACACACGCAGTGCTTGGTCCGCCACGACCGCTCCTCGCCAGCATG
CTTCCCAACATCGTCCACCTCCTAGCCCAGCCGGCTGATATGCCTTTCTC
GTCGCAGTCGCAGCATCAGCAGCAGCACTTCAGCCCGACCGAGCAAGTAT
CCAGCATGGTAATTGGGACCCGCAGCCTCTGTACACCACTGGTGCTGCTG
CCGTTGCCCTCCCTGCTCGCCCTCAGCCCGGCCGCTGCTCCGTCGTCGCC
GCAACAGGAGAGTACATTTAGAAAGGACCTTACACTTACAGAAACTCTCA
TCTTCAGTCTATCTTTTTAACCCTCCTCCTGCTTCTCGCCCCCCTTGCCC
CCTTCCTTCCTCCCCCCCTTGTCCTAGTTCCTCGTCAGTGGCACCGTGGC
CTGGATATACGAATTCAGTATCGGCCACTTCCTTGAATTCACAAAAGTCT
TGAAACAAACCAAGCAAGGCTCGTACCTGCAGCTGGTCCAGGGGATCATG
CGCGAGAAGGGCGTGGTTGGTGTGTGGGACGGGTTCTTTCCTTGGGGCTC
CATTCAGGCGATTGCCAAAGGCGCGGTATTTGGAGGGGCACATGCCTTGG
CCTTAGGGCCGGTGGCGCCTTTGGTGGAGCGAGGAGAACTGAGCCCCTTG
GTGGCTGAGACGATGGCGGGCGGCATCGCTGGAGGGTTTCAGGGGATGGT
GCTCAGCCCAACGTTATTGCTTAAGACCCGGGTCATGACCGATCCGATCT
TTCGCGAACGCATGAGCATGTGGGAGACCAGCAAGCAATCCGCCCGCGTG
GGCTTCAAGGTCATCCAGAAGGAAGGTTTGGCAGCGTTGATGAAGGGGAG
CCTGACCTTCTCTCTGAAGCGCGTTGCGGACTGGGGGACTCGGTTTTATT
TCGCCGTAATTTCCGAAGATTACCTCTTCAAGAAGGGGGATGCGACCTAT
GTGTTGTCGAATCACGAGAAGCTGGCGGCGTCTCTGATTGGCGGGGGCCT
GTCCTCTCTCTTGACTCTCCCACTCGATGTGATGGTAGCCCAGATCCAGC
AGGCGAGCAAGGCCGGGCAGCAGGTGTCGGTGCTGGCGACCTTTCAGGCA
GAGTTTAAGCAGGGAGGGTGGGAGCGAGTGGCCGGATTTGCGACTAAGGG
TTTCGTGGCCCGCACGCTGCACGTGGCCTTGACGACTGCCTTGATGAAGA
CGTTGACGTCTGTAGTGTACGAAAAAATCTACGGGTGTCCAACTCCCCAG
CCCGCGAAGTCGTAAGGGAGGGGATGGAAGGAGGGAGAGAGGGATAGAGG
GAAGGAGGGAGGGAGGGAAGGAGAGAGGGAGAGAGAGATGGTAGAGCATT
TTTGATTTTTGTTTTGTGACAGTGGGTAAGGAAGGACGTGTTTAAA back to topprotein sequence of jgi.p|Nanoce1779_2|591638 >mRNA_5176-protein ID=mRNA_5176-protein|Name=jgi.p|Nanoce1779_2|591638|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MREKGVVGVWDGFFPWGSIQAIAKGAVFGGAHALALGPVAPLVERGELSP
LVAETMAGGIAGGFQGMVLSPTLLLKTRVMTDPIFRERMSMWETSKQSAR
VGFKVIQKEGLAALMKGSLTFSLKRVADWGTRFYFAVISEDYLFKKGDAT
YVLSNHEKLAASLIGGGLSSLLTLPLDVMVAQIQQASKAGQQVSVLATFQ
AEFKQGGWERVAGFATKGFVARTLHVALTTALMKTLTSVVYEKIYGCPTP
QPAKS* back to topmRNA from alignment at scaffold_12:652130..654355- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5176 ID=mRNA_5176|Name=jgi.p|Nanoce1779_2|591638|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at scaffold_12:652130..654355- (Nannochloropsis oceanica)
CAGTAACGGAAGGGGCCTCCTGCGGAGCAAAATTGACTCCCACAATTCAC
ACACCACACACGCAGTGCTTGGTCCGCCACGACCGCTCCTCGCCAGCATG
CTTCCCAACATCGTCCACCTCCTAGCCCAGCCGGCTGATATGCCTTTCTC
GTCGCAGTCGCAGCATCAGCAGCAGCACTTCAGGTACGTAGCCTCACCCT
GGCGAGCGCTCAGATGAGGCTCATAGACACTATCTCTAACGTCCTTTTTG
TACCCCCATGCAGCCCGACCGAGCAAGTATCCAGCATGGTAATTGGGACC
CGCAGCCTCTGTACACCACTGGTGCTGCTGCCGTTGCCCTCCCTGCTCGC
CCTCAGCCCGGCCGCTGCTCCGTCGTCGCCGCAACAGGAGAGTACATTTA
GAAAGGTGAGCAAACAAAACAATTTTATTTGACACACAAACTGTAAAGTA
TATTCATGTTCGCATGTGAGCTGAGAGTTAAAGAGGTAGCCTTTCAAACC
TGCTTGCAGACCTTGTCGGTGATGCAAGGCGCGTCTTCACACCTCTTCCT
TCCACCTCAACATACCGCTTAGTCTGAACACTCTATCAACGACCAACGAT
CAATTCAAGCAATTTGAAACACGCTTCTCCAAACCCCCCACAATCCCATC
AACAGGACCTTACACTTACAGAAACTCTCATCTTCAGTCTATCTTTTTAA
CCCTCCTCCTGCTTCTCGCCCCCCTTGCCCCCTTCCTTCCTCCCCCCCTT
GTCCTAGTTCCTCGTCAGTGGCACCGTGGCCTGGATATACGAATTCAGTA
TCGGCCACTTCCTTGAATTCACAAAAGTCTTGAAACAAACCAAGCAAGGC
TCGTACCTGCAGCTGGTCCAGGGGATCATGCGCGAGAAGGGCGTGGTTGG
TGTGTGGGACGGGTTCTTTCCTTGGGGCTCCATTCAGGCGATTGCCAAAG
GTACGTGTGTAGGTGTGTATGTACGTATGTAGATGTGCATGCAAGGAGGA
CTAGGGGGATGGGATTTTGCATCATGTGAAAGCGAAAAGGTGGGCAATAA
TGTCTTCCCCTGCCTGCCGATTTGGTTCCACTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTTTCCCTCATCCAGGCGCGGTATTTGGAGGGG
CACATGCCTTGGCCTTAGGGCCGGTGGCGCCTTTGGTGGAGCGAGGAGAA
CTGAGCCCCTTGGTGGCTGAGACGATGGCGGGCGGCATCGCTGGAGGGTT
TCAGGGGATGGTGCTCAGCCCAACGTTATTGCTTAAGGTATGTGTTTGAT
GGTCCTGTCTCAAACTATCATGTCTGGTCGTTGGCAATCACGTCCAGTCC
GGTCCTTTCTCCCTCTCTCCCTCCCCTCTTCCCTCCCTTTCTTCCCCCTC
TCTCACCAGACCCGGGTCATGACCGATCCGATCTTTCGCGAACGCATGAG
CATGTGGGAGACCAGCAAGCAATCCGCCCGCGTGGGCTTCAAGGTCATCC
AGAAGGAAGGTTTGGCAGCGTTGATGAAGGGGAGCCTGACCTTCTCTCTG
AAGCGCGTTGCGGACTGGGGGACTCGGTTTTATTTCGCCGTAATTTCCGA
AGATTACCTCTTCAAGAAGGGGGATGCGACCTATGTGTTGTCGAATCACG
AGAAGCTGGCGGCGTCTCTGATTGGCGGGGGCCTGTCCTCTCTCTTGACT
CTCCCACTCGATGTGATGGTAGCCCAGATCCAGCAGGCGAGCAAGGCCGG
GCAGCAGGTGTCGGTGCTGGCGACCTTTCAGGCAGAGTTTAAGCAGGGAG
GGTGGGAGCGAGTGGCCGGATTTGCGACTAAGGGTTTCGTGGCCCGCACG
CTGCACGTGGCCTTGACGACTGGTGAGGAGGAGAAGGAGGGAGGGAGGGA
GGCTAGAAGGGAGGGGAAGATTGATTCAAATAGGAGTCACCGCGAAAACA
TTCTACTCAATTCTCCCTCCCTCCCTCCCTCCCGCCCGCCCTCCCTCCCG
CCCTCCCTCCCGCCTTAGCCTTGATGAAGACGTTGACGTCTGTAGTGTAC
GAAAAAATCTACGGGTGTCCAACTCCCCAGCCCGCGAAGTCGTAAGGGAG
GGGATGGAAGGAGGGAGAGAGGGATAGAGGGAAGGAGGGAGGGAGGGAAG
GAGAGAGGGAGAGAGAGATGGTAGAGCATTTTTGATTTTTGTTTTGTGAC
AGTGGGTAAGGAAGGACGTGTTTAAA back to topCoding sequence (CDS) from alignment at scaffold_12:652130..654355- >mRNA_5176 ID=mRNA_5176|Name=jgi.p|Nanoce1779_2|591638|organism=Nannochloropsis oceanica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_12:652130..654355- (Nannochloropsis oceanica)
CCTTGATGAAGACGTTGACGTCTGTAGTGTACGAAAAAATCTACGGGTGT
CCAACTCCCCAGCCCGCGAAGTCGTAAACCCGGGTCATGACCGATCCGAT
CTTTCGCGAACGCATGAGCATGTGGGAGACCAGCAAGCAATCCGCCCGCG
TGGGCTTCAAGGTCATCCAGAAGGAAGGTTTGGCAGCGTTGATGAAGGGG
AGCCTGACCTTCTCTCTGAAGCGCGTTGCGGACTGGGGGACTCGGTTTTA
TTTCGCCGTAATTTCCGAAGATTACCTCTTCAAGAAGGGGGATGCGACCT
ATGTGTTGTCGAATCACGAGAAGCTGGCGGCGTCTCTGATTGGCGGGGGC
CTGTCCTCTCTCTTGACTCTCCCACTCGATGTGATGGTAGCCCAGATCCA
GCAGGCGAGCAAGGCCGGGCAGCAGGTGTCGGTGCTGGCGACCTTTCAGG
CAGAGTTTAAGCAGGGAGGGTGGGAGCGAGTGGCCGGATTTGCGACTAAG
GGTTTCGTGGCCCGCACGCTGCACGTGGCCTTGACGACTGGCGCGGTATT
TGGAGGGGCACATGCCTTGGCCTTAGGGCCGGTGGCGCCTTTGGTGGAGC
GAGGAGAACTGAGCCCCTTGGTGGCTGAGACGATGGCGGGCGGCATCGCT
GGAGGGTTTCAGGGGATGGTGCTCAGCCCAACGTTATTGCTTAAGATGCG
CGAGAAGGGCGTGGTTGGTGTGTGGGACGGGTTCTTTCCTTGGGGCTCCA
TTCAGGCGATTGCCAAAGCCTTGATGAAGACGTTGACGTCTGTAGTGTAC
GAAAAAATCTACGGGTGTCCAACTCCCCAGCCCGCGAAGTCGTAAACCCG
GGTCATGACCGATCCGATCTTTCGCGAACGCATGAGCATGTGGGAGACCA
GCAAGCAATCCGCCCGCGTGGGCTTCAAGGTCATCCAGAAGGAAGGTTTG
GCAGCGTTGATGAAGGGGAGCCTGACCTTCTCTCTGAAGCGCGTTGCGGA
CTGGGGGACTCGGTTTTATTTCGCCGTAATTTCCGAAGATTACCTCTTCA
AGAAGGGGGATGCGACCTATGTGTTGTCGAATCACGAGAAGCTGGCGGCG
TCTCTGATTGGCGGGGGCCTGTCCTCTCTCTTGACTCTCCCACTCGATGT
GATGGTAGCCCAGATCCAGCAGGCGAGCAAGGCCGGGCAGCAGGTGTCGG
TGCTGGCGACCTTTCAGGCAGAGTTTAAGCAGGGAGGGTGGGAGCGAGTG
GCCGGATTTGCGACTAAGGGTTTCGTGGCCCGCACGCTGCACGTGGCCTT
GACGACTGGCGCGGTATTTGGAGGGGCACATGCCTTGGCCTTAGGGCCGG
TGGCGCCTTTGGTGGAGCGAGGAGAACTGAGCCCCTTGGTGGCTGAGACG
ATGGCGGGCGGCATCGCTGGAGGGTTTCAGGGGATGGTGCTCAGCCCAAC
GTTATTGCTTAAGATGCGCGAGAAGGGCGTGGTTGGTGTGTGGGACGGGT
TCTTTCCTTGGGGCTCCATTCAGGCGATTGCCAAAGCCTTGATGAAGACG
TTGACGTCTGTAGTGTACGAAAAAATCTACGGGTGTCCAACTCCCCAGCC
CGCGAAGTCGTAAACCCGGGTCATGACCGATCCGATCTTTCGCGAACGCA
TGAGCATGTGGGAGACCAGCAAGCAATCCGCCCGCGTGGGCTTCAAGGTC
ATCCAGAAGGAAGGTTTGGCAGCGTTGATGAAGGGGAGCCTGACCTTCTC
TCTGAAGCGCGTTGCGGACTGGGGGACTCGGTTTTATTTCGCCGTAATTT
CCGAAGATTACCTCTTCAAGAAGGGGGATGCGACCTATGTGTTGTCGAAT
CACGAGAAGCTGGCGGCGTCTCTGATTGGCGGGGGCCTGTCCTCTCTCTT
GACTCTCCCACTCGATGTGATGGTAGCCCAGATCCAGCAGGCGAGCAAGG
CCGGGCAGCAGGTGTCGGTGCTGGCGACCTTTCAGGCAGAGTTTAAGCAG
GGAGGGTGGGAGCGAGTGGCCGGATTTGCGACTAAGGGTTTCGTGGCCCG
CACGCTGCACGTGGCCTTGACGACTGGCGCGGTATTTGGAGGGGCACATG
CCTTGGCCTTAGGGCCGGTGGCGCCTTTGGTGGAGCGAGGAGAACTGAGC
CCCTTGGTGGCTGAGACGATGGCGGGCGGCATCGCTGGAGGGTTTCAGGG
GATGGTGCTCAGCCCAACGTTATTGCTTAAGATGCGCGAGAAGGGCGTGG
TTGGTGTGTGGGACGGGTTCTTTCCTTGGGGCTCCATTCAGGCGATTGCC
AAAGCCTTGATGAAGACGTTGACGTCTGTAGTGTACGAAAAAATCTACGG
GTGTCCAACTCCCCAGCCCGCGAAGTCGTAAACCCGGGTCATGACCGATC
CGATCTTTCGCGAACGCATGAGCATGTGGGAGACCAGCAAGCAATCCGCC
CGCGTGGGCTTCAAGGTCATCCAGAAGGAAGGTTTGGCAGCGTTGATGAA
GGGGAGCCTGACCTTCTCTCTGAAGCGCGTTGCGGACTGGGGGACTCGGT
TTTATTTCGCCGTAATTTCCGAAGATTACCTCTTCAAGAAGGGGGATGCG
ACCTATGTGTTGTCGAATCACGAGAAGCTGGCGGCGTCTCTGATTGGCGG
GGGCCTGTCCTCTCTCTTGACTCTCCCACTCGATGTGATGGTAGCCCAGA
TCCAGCAGGCGAGCAAGGCCGGGCAGCAGGTGTCGGTGCTGGCGACCTTT
CAGGCAGAGTTTAAGCAGGGAGGGTGGGAGCGAGTGGCCGGATTTGCGAC
TAAGGGTTTCGTGGCCCGCACGCTGCACGTGGCCTTGACGACTGGCGCGG
TATTTGGAGGGGCACATGCCTTGGCCTTAGGGCCGGTGGCGCCTTTGGTG
GAGCGAGGAGAACTGAGCCCCTTGGTGGCTGAGACGATGGCGGGCGGCAT
CGCTGGAGGGTTTCAGGGGATGGTGCTCAGCCCAACGTTATTGCTTAAGA
TGCGCGAGAAGGGCGTGGTTGGTGTGTGGGACGGGTTCTTTCCTTGGGGC
TCCATTCAGGCGATTGCCAAAG back to top
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