jgi.p|Nanoce1779_2|591629, mRNA_5175 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591629
Unique NamemRNA_5175
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1238
Alignment locationscaffold_12:650202..651890 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591715
TrackFilteredModels2
ProteinId591629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:650202..651890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591629gene_5175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591629mRNA_5175-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5175CDS_5175Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5175 ID=mRNA_5175|Name=jgi.p|Nanoce1779_2|591629|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG
TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT
CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG
GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG
GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA
CAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGGCCT
TTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCC
ATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCGCAT
CATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAG
CCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCC
CACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACACGAT
GATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGA
TGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACG
CTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCCTCT
ATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACGGCC
GGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCTGGG
TTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAAAGC
CAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAAC
CTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAAA
AAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGAG
AAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTGT
GTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCACT
CGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGAG
CGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGAG
GTGGATAAGGAGGATTTGGAGATTGTACATAGACCATT
back to top

protein sequence of jgi.p|Nanoce1779_2|591629

>mRNA_5175-protein ID=mRNA_5175-protein|Name=jgi.p|Nanoce1779_2|591629|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLR
QVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFS
AIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLL
SHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLL
TLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFA
GLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKAA*
back to top

mRNA from alignment at scaffold_12:650202..651890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5175 ID=mRNA_5175|Name=jgi.p|Nanoce1779_2|591629|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_12:650202..651890+ (Nannochloropsis oceanica)
ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG
TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT
CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG
GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG
GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA
CAACCGCATGGTGGCTTTAGGTACGTGGATAACGGGAGAGGGATGATCAT
TTGCGGTGTTTCGAGGTTATTGTGTGTGTGTTTGTACTAATGTAAATAGG
TTGGATTGCTGCCACGCGTCACGCTGACGTACCCCCCTCTTCTTCCGGGA
TGTGCGCGCTTTGTCGTAATGGCACGCGGCAATGCTGCATACCATGCTGC
ATCCTTTTCATACCATCGCCAAGACTCACCAAATCCGCCATTCTCCTTCC
TCCCCTACTTCTTCTTTCACCCCGTCAAATAAATAAAATAAAATAAAACA
GGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATCGTGCT
CAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCCCGTCT
TGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATATGCTT
TATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTATGCGGT
CCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCTGCAAA
CTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGGCCGAG
GGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTGGGGCT
TGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCGTTGCTCGTGGCGT
TCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGCCTACACATACCTG
GCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACGGGGTCTTTTACTT
CCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAACTTCTTCTGGTTCT
ACAAGTTGTTAACCTTGGTATACCGGTACGTTTTTGGGGTTCTCTTTTTT
GACCTCCCTCCCTCTCTCCCTCCTTCCCTTGGTTTAATCCTCCTTCTTGA
GCCGGAAGGAAACTTCCAATTGTAAGACCCATCAGTCACTTACTCACGCC
CTACCTTCCCCCTCCCTCCCTCTCTCCCTCTCTCCCTGTCTACAGCAAAG
CCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAA
CCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAA
AAAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGA
GAAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTG
TGTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCAC
TCGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGA
GCGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGA
GGTGGATAAGGAGGATTTGGAGATTGTACATAGACCATT
back to top

Coding sequence (CDS) from alignment at scaffold_12:650202..651890+

>mRNA_5175 ID=mRNA_5175|Name=jgi.p|Nanoce1779_2|591629|organism=Nannochloropsis oceanica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_12:650202..651890+ (Nannochloropsis oceanica)
ATGTACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGC
CATCGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGT
ATGGGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGC
CAGGTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTG
GGACAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGG
CCTTTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCC
GCCATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCG
CATCATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTC
CAGCCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTC
TCCCACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACAC
GATGATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGT
GGATGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTG
ACGCTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCC
TCTATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACG
GCCGGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCT
GGGTTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAA
AGCCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAG
AACCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGATGTACAAG
GACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCATCGACGG
GGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATGGGCTGC
TGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAGGTCTCG
GCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGACAACCG
CATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGT
ACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAA
ATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCGCATCATGAC
CGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGT
ATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGG
CACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGT
TTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGATGATGA
ATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCG
TTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGC
CTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACG
GGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAAC
TTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAAAGCCAGAGG
CATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAACCTTCTT
ACTCATCAGGTAAATCCAAAAAGGCCGCATAGATGTACAAGGACTTGCTC
TCCGGCCTCACCCGCTTCTACACGGCGGAGGCCATCGACGGGGAGGCCCT
ATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATGGGCTGCTGTGCACAA
TGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAGGTCTCGGCTACCTAT
CGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGACAACCGCATGGTGGC
TTTAGGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATCG
TGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCCC
GTCTTGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATAT
GCTTTATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTATG
CGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCTG
CAAACTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGGC
CGAGGGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTGG
GGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCGTTGCTCGTG
GCGTTCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGCCTACACATA
CCTGGCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACGGGGTCTTTT
ACTTCCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAACTTCTTCTGG
TTCTACAAGTTGTTAACCTTGGTATACCGCAAAGCCAGAGGCATCAAGAG
CCCCATGACCTCGCCCGTCAAGCGACGACAAGAACCTTCTTACTCATCAG
GTAAATCCAAAAAGGCCGCATAG
back to top
Synonyms
Publications