jgi.p|Nanoce1779_2|57850, mRNA_5174 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|57850
Unique Name	mRNA_5174
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3288
Alignment location	scaffold_12:647297..651134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	57936
Track	FilteredModels2
ProteinId	57850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:647297..651134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|57850	gene_5174	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|57850	mRNA_5174-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5174	CDS_5174	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:647297..651134+
coding sequence from alignment at scaffold_12:647297..651134+

mRNA sequence

>mRNA_5174 ID=mRNA_5174|Name=jgi.p|Nanoce1779_2|57850|organism=Nannochloropsis oceanica|type=mRNA|length=3288bp
GATGACAATAATACACGAGTCTAGTTTATTTTCTTTGTGTCCTAGCTACC
CTGCCTCGTTAGAACTACCCCCCATCCCCTCCCTCCTTCCCTACCCTCTA
CTTCTCTCCTCAAGACGCTGTCCGAGCGGCCCAAACGTCCCACTCCTCTG
CTCATCCAAAGCCTGATTCGCCATCGCATCCGCCTCTGAGTTTAAGGCCC
GCTCCACGTGCCTAATCTCAAACTCCGGGAAACTGTCCTTTAACTCAATC
GCCTCAGCATGCAATACCTTCAGCCTCTCGTTTCTCACCTTGTACTCCCC
CATAATTTGCTTCACCACCAACAGCGAATCCCCTTCCACGCACAAGCGAC
GGATACCCAAAGCTTTCGCCGCCCGTAACCCTTCAATCAATCCTCGGTAC
TCTGCCTCATTATTAGTCAAGGGCGGGTCATCACCAAACCACAACGCCAA
ACTCCTTACCCGCGCTTGAGAGACCTTCTCATATATCACCACACCAGCAC
CGCCTGGGCCGGGGTTCCCTCGTGAGCCACCATCGAATTGTAGCAAGTAC
TCAGCAGTAGGATTATATACATGGGCGGAGGGTGTGTCCGCTGTCGCGCT
CGTCGAGAAACCTCGACGTCCTATTCCTTCTCCTCGAGCTGCGCCAACTG
CTGCTCCTGTTCCTGCTACCCTTCGTGAGGCAGCCACTGGTACAGGTGGT
GGTGCGTCAATTCTCAGTCCATGCGCGCCAAATGTCCCACTTTTCTCCTC
ATCTAACGCTTGATTTGCCAGGGCATCCGCCACAGGGTTCATCGCCCTCC
TCACATGCTTAAAACTCACATCCTCAAAGCCATCCTTCAACGCCATCGCC
TCTCTATACAAGACCTCAAGCCTCTCATTCTTCACGTTGTATTCCCCGAG
CATCTGCCGAATAGCCAGCAATGAATCTCCCTCCACACACACCTTTCTAA
TCCCCAAGTTTTTCGCCATCCTTAACCCGGCGATCAGACCCTGGTATTCC
GCCTCATTATTCGTCACCGGAGGATCACTCCCCAACCACACCGCCACCCC
CCTCACCTTCCTTCCCGCCCTCCCCCTTGGTGTCTTGTAAAAAACAGCAG
CACCGGCTCCAGCAGGTCCGGGGTTGCCACGAGCGGCACCGTCGAAGCGT
AGAATATACTCAGCTTTTGGATCGATCGGGGGAGTGGCTGCTGCTGCTGC
TGCTGCTGTATCTGCTACTGCTGCTACTGCTGCCTCTACTGCTGCTGCTG
CTGGTCGAGCGTCGGATATAGGAGATGCTTCCGGTGGGGGCGCAAGGGAA
TCCTGTTTGTTCGAAAAGGAGGAGGAGGAGCCAGAAGGGGGGTAGGGGGA
GACTGTAGCAGTGGGTGTCAACGTAATAGAGGGAAGATGCGGGAGCACGT
GGTCCCAGTCCTCGTGATTGCCCCTCAATTCAGGAACAGGTTCGACCCAC
CCCCCTTCCCCCGCGCCCTCGCCCTCCGCCAGATCCACCGGATGATCGTA
CCACACGGAAAAGGAGGGGAAATGACGGATAGACGATTGGATCTTCTGAT
GGGCCGCTTGCAAGCCTGCCTTGCCACGGCTCTTGCTGCTGCTGCTGCTG
CTGCTGGTCTCATTCAGCGGAGTCACTCCACATATCTCCCGGGCCATCTG
TGCCGAGGGGACGCAGACTTGCATATTTTTCAATCCGAGGGCATAGGCAG
CTGCGAGACCTTCGGCAAGCACTCCATAGGTTGCTTCGCGCTGGCCAGGG
CCATTCCCAATCCACGCGCGAGTGCACCATACCTTGAGAGGTTTCGGATG
TTCCTTGCGGGGGGCATGTGCAGCAGCAGCAGCAGCAGTAGTAGTGGTTG
TAGTCGTAGTCATAGTAGGCCTTTCTATTGTATCACCTTCCTTGGTAATA
TCACCTTCCGCGACCAGGAGAGGTCGGCTGGAAGGGGAGGGAGGGGAGGT
GGAGGAGGGTTCGCGGGCCTCGAGCCGGATGCGCAGGACATGCAAGGCAT
TGCTGTCAATATGGTGAAATGCCATACTGGCTGCCTTGGCGTCGCCGCCT
GGGAAGACAAGGTGGGAGTAAGCGGGGGGTTGGTCTTGGAAGGGACTTTC
GGGTTGGTAAAAACTGCGGGTGCTGGTGGATGGAGGGGGTAATGGGGTGG
CAGCGGGGGCAGCGGCATTGCTGATGGCTTTCTTCGCGGTCGCGGCCAAA
GAGGTGGCGCTGTGTCGCACAATTGATTTAGGTGCGTTCAAAAAAGGCGT
GGGAGCGTGATGTTGCATTGGCAGCTGCGTTGAGGGGGCAAGGAAGAGAG
GAGTCCAAGCCGTTCGTCGCCGGGCGCGGGCCATGTGTGCGAATGGAGCT
GTCACCGTTGCCACAGCACCTGCCCTGGCACGCACCAGCACATCACTTAG
CGTTAGTAGGGTCGCCATAATTATGCCACGTCGACAAAGTGGACGTTTTG
GTCTTAATCGAGCCCGTAGGTGCGAGGCACCGGGTAGACTTGACAACGAG
GAGGGGAAAGACGCCGCCGTGGCCGTCTTGCTTGTCATGGAAAGGCGAAC
GCAGGAGAAAAGACACCTAGTATCAACCAGACATCTAGCTATCAGATAAC
CGTGCAATACCTGTATGTAGGTGTGCGGACAAATGTGGATGCAGCCAAGA
TCTCCCACAGGCCCTCCACCTTGTCCTACTACAATGTACAAGGACTTGCT
CTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCATCGACGGGGAGGCCC
TATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATGGGCTGCTGTGCACA
ATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAGGTCTCGGCTACCTA
TCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGACAACCGCATGGTGG
CTTTAGGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATC
GTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCC
CGTCTTGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATA
TGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTAT
GCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCT
GCAAACTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGG
CCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTG
GGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACGCT

protein sequence of jgi.p|Nanoce1779_2|57850

>mRNA_5174-protein ID=mRNA_5174-protein|Name=jgi.p|Nanoce1779_2|57850|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MREHVVPVLVIAPQFRNRFDPPPFPRALALRQIHRMIVPHGKGGEMTDRR
LDLLMGRLQACLATALAAAAAAAGLIQRSHSTYLPGHLCRGDADLHIFQS
EGIGSCETFGKHSIGCFALARAIPNPRASAPYLERFRMFLAGGMCSSSSS
SSSGCSRSHSRPFYCITFLGNITFRDQERSAGRGGRGGGGGFAGLEPDAQ
DMQGIAVNMVKCHTGCLGVAAWEDKVGVSGGLVLEGTFGLVKTAGAGGWR
G*

mRNA from alignment at scaffold_12:647297..651134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5174 ID=mRNA_5174|Name=jgi.p|Nanoce1779_2|57850|organism=Nannochloropsis oceanica|type=mRNA|length=3838bp|location=Sequence derived from alignment at scaffold_12:647297..651134+ (Nannochloropsis oceanica)
GATGACAATAATACACGAGTCTAGTTTATTTTCTTTGTGTCCTAGCTACC
CTGCCTCGTTAGAACTACCCCCCATCCCCTCCCTCCTTCCCTACCCTCTA
CTTCTCTCCTCAAGACGCTGTCCGAGCGGCCCAAACGTCCCACTCCTCTG
CTCATCCAAAGCCTGATTCGCCATCGCATCCGCCTCTGAGTTTAAGGCCC
GCTCCACGTGCCTAATCTCAAACTCCGGGAAACTGTCCTTTAACTCAATC
GCCTCAGCATGCAATACCTTCAGCCTCTCGTTTCTCACCTTGTACTCCCC
CATAATTTGCTTCACCACCAACAGCGAATCCCCTTCCACGCACAAGCGAC
GGATACCCAAAGCTTTCGCCGCCCGTAACCCTTCAATCAATCCTCGGTAC
TCTGCCTCATTATTAGTCAAGGGCGGGTCATCACCAAACCACAACGCCAA
ACTCCTTACCCGCGCTTGAGAGACCTTCTCATATATCACCACACCAGCAC
CGCCTGGGCCGGGGTTCCCTCGTGAGCCACCATCGAATTGTAGCAAGTAC
TCAGCAGTAGGATTATATACATGGGCGGAGGGTGTGTCCGCTGTCGCGCT
CGTCGAGAAACCTCGACGTCCTATTCCTTCTCCTCGAGCTGCGCCAACTG
CTGCTCCTGTTCCTGCTACCCTTCGTGAGGCAGCCACTGGTACAGGTGGT
GGTGCGTCAATTCTCAGTCCATGCGCGCCAAATGTCCCACTTTTCTCCTC
ATCTAACGCTTGATTTGCCAGGGCATCCGCCACAGGGTTCATCGCCCTCC
TCACATGCTTAAAACTCACATCCTCAAAGCCATCCTTCAACGCCATCGCC
TCTCTATACAAGACCTCAAGCCTCTCATTCTTCACGTTGTATTCCCCGAG
CATCTGCCGAATAGCCAGCAATGAATCTCCCTCCACACACACCTTTCTAA
TCCCCAAGTTTTTCGCCATCCTTAACCCGGCGATCAGACCCTGGTATTCC
GCCTCATTATTCGTCACCGGAGGATCACTCCCCAACCACACCGCCACCCC
CCTCACCTTCCTTCCCGCCCTCCCCCTTGGTGTCTTGTAAAAAACAGCAG
CACCGGCTCCAGCAGGTCCGGGGTTGCCACGAGCGGCACCGTCGAAGCGT
AGAATATACTCAGCTTTTGGATCGATCGGGGGAGTGGCTGCTGCTGCTGC
TGCTGCTGTATCTGCTACTGCTGCTACTGCTGCCTCTACTGCTGCTGCTG
CTGGTCGAGCGTCGGATATAGGAGATGCTTCCGGTGGGGGCGCAAGGGAA
TCCTGTTTGTTCGAAAAGGAGGAGGAGGAGGCGGAGAAGGAGGAAGAGAA
GGAGGAAGAGCCAGAAGGGGGGTAGGGGGAGACTGTAGCAGTGGGTGTCA
ACGTAATAGAGGGAAGATGCGGGAGCACGTGGTCCCAGTCCTCGTGATTG
CCCCTCAATTCAGGAACAGGTTCGACCCACCCCCCTTCCCCCGCGCCCTC
GCCCTCCGCCAGATCCACCGGATGATCGTACCACACGGAAAAGGAGGGGA
AATGACGGATAGACGATTGGATCTTCTGATGGGCCGCTTGCAAGCCTGCC
TTGCCACGGCTCTTGCTGCTGCTGCTGCTGCTGCTGGTCTCATTCAGCGG
AGTCACTCCACATATCTCCCGGGCCATCTGTGCCGAGGGGACGCAGACTT
GCATATTTTTCAATCCGAGGGCATAGGCAGCTGCGAGACCTTCGGCAAGC
ACTCCATAGGTTGCTTCGCGCTGGCCAGGGCCATTCCCAATCCACGCGCG
AGTGCACCATACCTTGAGAGGTTTCGGATGTTCCTTGCGGGGGGCATGTG
CAGCAGCAGCAGCAGCAGTAGTAGTGGTTGTAGTCGTAGTCATAGTAGGC
CTTTCTATTGTATCACCTTCCTTGGTAATATCACCTTCCGCGACCAGGAG
AGGTCGGCTGGAAGGGGAGGGAGGGGAGGTGGAGGAGGGTTCGCGGGCCT
CGAGCCGGATGCGCAGGACATGCAAGGCATTGCTGTCAATATGGTGAAAT
GCCATACTGGCTGCCTTGGCGTCGCCGCCTGGGAAGACAAGGTGGGAGTA
AGCGGGGGGTTGGTCTTGGAAGGGACTTTCGGGTTGGTAAAAACTGCGGG
TGCTGGTGGATGGAGGGGGTAATGGGGTGGCAGCGGGGGCAGCGGCATTG
CTGATGGCTTTCTTCGCGGTCGCGGCCAAAGAGGTGGCGCTGTGTCGCAC
AATTGATTTAGGTGCGTTCAAAAAAGGCGTGGGAGCGTGATGTTGCATTG
GCAGCTGCGTTGAGGGGGCAAGGAAGAGAGGAGTCCAAGCCGTTCGTCGC
CGGGCGCGGGCCATGTGTGCGAATGGAGCTGTCACCGTTGCCACAGCACC
TGCCCTGGCACGCACCAGCACATCACTTAGCGTTAGTAGGGTCGCCATAA
TTATGCCACGTCGACAAAGTGGACGTTTTGGTCTTAATCGAGCCCGTAGG
TGCGAGGCACCGGGTAGACTTGACAACGAGGAGGGGAAAGACGCCGCCGT
GGCCGTCTTGCTTGTCATGGAAAGGCGAACGCAGGAGAAAAGACACCTAG
TATCAACCAGACATCTAGCTATCAGATAACCGTGCAATACCTGTATGTAG
GTGTGCGGACAAATGTGGATGTGAGTGTTTGGTAGCTGCAAGGGTATCGA
GGGAGAAGGGGAAAAGGGCGAGGGTTGTTGAAGGAAGAAGTGGTGTGATG
ACAAGAGGAGCTTCGCTTGCCACCAAGATCACGGACAACCTACGCCACGG
TCAGCACACCCTTAGCTTCCTACAGCTCGACGTCGAAGGGGTCATTCCAT
CTTTGATCCCGAAATGTTACGCTAAATATGTCTTTGCCCACCGCACACTT
ATCGCACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTA
CAATGTACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAG
GCCATCGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGG
GTATGGGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGC
GCCAGGTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGAC
TGGGACAACCGCATGGTGGCTTTAGGTACGTGGATAACGGGAGAGGGATG
ATCATTTGCGGTGTTTCGAGGTTATTGTGTGTGTGTTTGTACTAATGTAA
ATAGGTTGGATTGCTGCCACGCGTCACGCTGACGTACCCCCCTCTTCTTC
CGGGATGTGCGCGCTTTGTCGTAATGGCACGCGGCAATGCTGCATACCAT
GCTGCATCCTTTTCATACCATCGCCAAGACTCACCAAATCCGCCATTCTC
CTTCCTCCCCTACTTCTTCTTTCACCCCGTCAAATAAATAAAATAAAATA
AAACAGGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATC
GTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCC
CGTCTTGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATA
TGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTAT
GCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCT
GCAAACTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGG
CCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTG
GGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACGCT

Coding sequence (CDS) from alignment at scaffold_12:647297..651134+

>mRNA_5174 ID=mRNA_5174|Name=jgi.p|Nanoce1779_2|57850|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_12:647297..651134+ (Nannochloropsis oceanica)
ATGCGGGAGCACGTGGTCCCAGTCCTCGTGATTGCCCCTCAATTCAGGAA
CAGGTTCGACCCACCCCCCTTCCCCCGCGCCCTCGCCCTCCGCCAGATCC
ACCGGATGATCGTACCACACGGAAAAGGAGGGGAAATGACGGATAGACGA
TTGGATCTTCTGATGGGCCGCTTGCAAGCCTGCCTTGCCACGGCTCTTGC
TGCTGCTGCTGCTGCTGCTGGTCTCATTCAGCGGAGTCACTCCACATATC
TCCCGGGCCATCTGTGCCGAGGGGACGCAGACTTGCATATTTTTCAATCC
GAGGGCATAGGCAGCTGCGAGACCTTCGGCAAGCACTCCATAGGTTGCTT
CGCGCTGGCCAGGGCCATTCCCAATCCACGCGCGAGTGCACCATACCTTG
AGAGGTTTCGGATGTTCCTTGCGGGGGGCATGTGCAGCAGCAGCAGCAGC
AGTAGTAGTGGTTGTAGTCGTAGTCATAGTAGGCCTTTCTATTGTATCAC
CTTCCTTGGTAATATCACCTTCCGCGACCAGGAGAGGTCGGCTGGAAGGG
GAGGGAGGGGAGGTGGAGGAGGGTTCGCGGGCCTCGAGCCGGATGCGCAG
GACATGCAAGGCATTGCTGTCAATATGGTGAAATGCCATACTGGCTGCCT
TGGCGTCGCCGCCTGGGAAGACAAGGTGGGAGTAAGCGGGGGGTTGGTCT
TGGAAGGGACTTTCGGGTTGGTAAAAACTGCGGGTGCTGGTGGATGGAGG
GGGTAA

Synonyms

Publications