jgi.p|Nanoce1779_2|591624, mRNA_5173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591624
Unique NamemRNA_5173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_12:647615..648265 -

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Properties
Property NameValue
TranscriptId591710
TrackFilteredModels2
ProteinId591624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:647615..648265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591624gene_5173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5173CDS_5173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591624mRNA_5173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5173 ID=mRNA_5173|Name=jgi.p|Nanoce1779_2|591624|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
ATGGCGAAAAACTTGGGGATTAGAAAGGTGTGTGTGGAGGGAGATTCATT
GCTGGCTATTCGGCAGATGCTCGGGGAATACAACGTGAAGAATGAGAGGC
TTGAGGTCTTGTATAGAGAGGCGATGGCGTTGAAGGATGGCTTTGAGGAT
GTGAGTTTTAAGCATGTGAGGAGGGCGATGAACCCTGTGGCGGATGCCCT
GGCAAATCAAGCGTTAGATGAGGAGAAAAGTGGGACATTTGGCGCGCATG
GACTGAGAATTGACGCACCACCACCTGTACCAGTGGCTGCCTCACGAAGG
GTAGCAGGAACAGGAGCAGCAGTTGGCGCAGCTCGAGGAGAAGGAATAGG
ACGTCGAGGTTTCTCGACGAGCGCGACAGCGGACACACCCTCCGCCCATG
TATATAATCCTACTGCTGAGTACTTGCTACAATTCGATGGTGGCTCACGA
GGGAACCCCGGCCCAGGCGGTGCTGGTGTGGTGATATATGAGAAGGTCTC
TCAAGCGCGGGTAAGGAGTTTGGCGTTGTGGTTTGGTGATGACCCGCCCT
TGACTAATAATGAGGCAGAGTACCGAGGATTGATTGAAGGGTTACGGGCG
GCGAAAGCTTTGGGTATCCGTCGCTTGTGCGTGGAAGGGGATTCGCTGTT
G
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protein sequence of jgi.p|Nanoce1779_2|591624

>mRNA_5173-protein ID=mRNA_5173-protein|Name=jgi.p|Nanoce1779_2|591624|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFED
VSFKHVRRAMNPVADALANQALDEEKSGTFGAHGLRIDAPPPVPVAASRR
VAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSR
GNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRA
AKALGIRRLCVEGDSLL
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mRNA from alignment at scaffold_12:647615..648265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5173 ID=mRNA_5173|Name=jgi.p|Nanoce1779_2|591624|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at scaffold_12:647615..648265- (Nannochloropsis oceanica)
ATGGCGAAAAACTTGGGGATTAGAAAGGTGTGTGTGGAGGGAGATTCATT
GCTGGCTATTCGGCAGATGCTCGGGGAATACAACGTGAAGAATGAGAGGC
TTGAGGTCTTGTATAGAGAGGCGATGGCGTTGAAGGATGGCTTTGAGGAT
GTGAGTTTTAAGCATGTGAGGAGGGCGATGAACCCTGTGGCGGATGCCCT
GGCAAATCAAGCGTTAGATGAGGAGAAAAGTGGGACATTTGGCGCGCATG
GACTGAGAATTGACGCACCACCACCTGTACCAGTGGCTGCCTCACGAAGG
GTAGCAGGAACAGGAGCAGCAGTTGGCGCAGCTCGAGGAGAAGGAATAGG
ACGTCGAGGTTTCTCGACGAGCGCGACAGCGGACACACCCTCCGCCCATG
TATATAATCCTACTGCTGAGTACTTGCTACAATTCGATGGTGGCTCACGA
GGGAACCCCGGCCCAGGCGGTGCTGGTGTGGTGATATATGAGAAGGTCTC
TCAAGCGCGGGTAAGGAGTTTGGCGTTGTGGTTTGGTGATGACCCGCCCT
TGACTAATAATGAGGCAGAGTACCGAGGATTGATTGAAGGGTTACGGGCG
GCGAAAGCTTTGGGTATCCGTCGCTTGTGCGTGGAAGGGGATTCGCTGTT
G
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Coding sequence (CDS) from alignment at scaffold_12:647615..648265-

>mRNA_5173 ID=mRNA_5173|Name=jgi.p|Nanoce1779_2|591624|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_12:647615..648265- (Nannochloropsis oceanica)
ATGGCGAAAAACTTGGGGATTAGAAAGGTGTGTGTGGAGGGAGATTCATT
GCTGGCTATTCGGCAGATGCTCGGGGAATACAACGTGAAGAATGAGAGGC
TTGAGGTCTTGTATAGAGAGGCGATGGCGTTGAAGGATGGCTTTGAGGAT
GTGAGTTTTAAGCATGTGAGGAGGGCGATGAACCCTGTGGCGGATGCCCT
GGCAAATCAAGCGTTAGATGAGGAGAAAAGTGGGACATTTGGCGCGCATG
GACTGAGAATTGACGCACCACCACCTGTACCAGTGGCTGCCTCACGAAGG
GTAGCAGGAACAGGAGCAGCAGTTGGCGCAGCTCGAGGAGAAGGAATAGG
ACGTCGAGGTTTCTCGACGAGCGCGACAGCGGACACACCCTCCGCCCATG
TATATAATCCTACTGCTGAGTACTTGCTACAATTCGATGGTGGCTCACGA
GGGAACCCCGGCCCAGGCGGTGCTGGTGTGGTGATATATGAGAAGGTCTC
TCAAGCGCGGGTAAGGAGTTTGGCGTTGTGGTTTGGTGATGACCCGCCCT
TGACTAATAATGAGGCAGAGTACCGAGGATTGATTGAAGGGTTACGGGCG
GCGAAAGCTTTGGGTATCCGTCGCTTGTGCGTGGAAGGGGATTCGCTGTT
G
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Synonyms
Publications