jgi.p|Nanoce1779_2|591622, mRNA_5172 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591622
Unique Name	mRNA_5172
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2405
Alignment location	scaffold_12:644872..647276 -

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Properties


Property Name	Value
TranscriptId	591708
Track	FilteredModels2
ProteinId	591622

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:644872..647276 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591622	gene_5172	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591622	mRNA_5172-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5172	CDS_5172	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:644872..647276-
coding sequence from alignment at scaffold_12:644872..647276-

mRNA sequence

>mRNA_5172 ID=mRNA_5172|Name=jgi.p|Nanoce1779_2|591622|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp
GATAGATTTATCGTTTGTTGTTTTTGTGTCAATGGGAGTGTTCAAGTCAA
GGTGGGGAGGTTGGCTGGCCCGGCTTTTTCCTCACGGCACAGTCCAATCA
TAGAGCGTATCCTATGTGTCTTGCCTCTCACCCGCATCCCTGCACACCTC
GGCACAGGCACAAGTACGACTATTATCCACGCAGCGCCTTGGTCCAACCA
AAGTGTCACAAGGATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCC
TCGCTGCAGCGGCAACCGCATCAACATCAATCCCTCGCCTTGCATCCGCC
TTTCAGGCCCCCGTCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGC
CGCTGCAGCTGCACGACGACAGCAACGTCAACAGCGACAATCATCCCCCG
AGCTCAAGCACACTCCCTTGCAAGCAACTGCCACAAGCAGCGGTAGCAGC
AGCAGCAAGCTCTCAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGA
GCAGCATCAAGGTGCAGGCCCTACTCCCAAGGCTACCGAATATTATCACG
CGTCGCTCGCGGAAGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCG
GAGAAGGCCGAGAAAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCC
AGACGCGGAAAGCTTGTACGACGGGAATTTGATGCGACAATTCGGAGACC
ACTTGGACCTGTGCAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAAT
ACAATTGTCATGCATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGT
GCCTGCTGTCTTGATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGG
ACGACGACCCATATTGGGACGACGATGACGATTCAGCATTTGACTTCTCC
GCGCTGTACAACGATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGA
GCTGGAGAAGCTGTATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAG
GGATGAAGGGGTGGGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCT
TTCACGGTAAATGCGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTA
TTTCATTGATCGGAGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGA
AAGAAGTGGCGTTGATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGT
AGTTTGAGTACAACTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCG
GGAGTTTTTTGAGACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCT
TGGGCTTGGAGGACGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTC
TTCCGCGATGGGGCGGACCGAATGGGCCAAGACGACGCCGCGAACTACGC
TCGGCGCTCGCCCTGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCA
AAAAGGCCCAGAAGGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAG
GTGACCCTCGACAAGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGA
ACGGGACTGGGGGGAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGG
TGCCTATTCTTTCGACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAG
GCTCTGAGTGAGGATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAAC
GGAAAAGGCAGCCACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGC
AATTTCAGAAAATGATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAG
AAGGGAAATATTGATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGC
TGCTGCCTATTCGGCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTC
GTTTTTTTGGGGGGGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCA
GCGGCGGCGGCGGCAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGA
TGAGGATGATTGGGATAAACCCCTTCCGCAGTCACAAATATATTTTATGA
CAGAAAATGATCCGACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAG
GACTCTAAGGCGGTCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGT
GCCTTTGTCTCCTGCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGA
TGAGGAAGGATTAGAAAGAGAGAGGAAGGGAAGGGGGAAAGTTAGAGAGG
GTGTTTTAAGATGACCTCTCTCTGCTCTCGATCATTAAGTGATGAAGGAA
ACGAAAGAACCGCAATTTATTAAGGACAGCCGTTGGTGCTGCTTTGTTTT
CACTGTTTTTATCTTCTTTCTAAAAGTCGTCGCGGTGTATGTGCACGAAA
TTAAC

protein sequence of jgi.p|Nanoce1779_2|591622

>mRNA_5172-protein ID=mRNA_5172-protein|Name=jgi.p|Nanoce1779_2|591622|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MIMRVFLCVLPLLAAAATASTSIPRLASAFQAPVSSASKRTHPFSAAAAA
RRQQRQQRQSSPELKHTPLQATATSSGSSSSKLSDLQAWTAKWQAEQHQG
AGPTPKATEYYHASLAEVLAEVFDQVLKAEKAEKGVPPPQHLLLFPDAES
LYDGNLMRQFGDHLDLCKECCEIMGMSQNTIVMHPSTTIPALQCPVPAVL
IKGIVQTSEEFPDDDPYWDDDDDSAFDFSALYNDDNGSPSAAAARELEKL
YQVPEEDGPIMEGMKGWVDAIIADLGVCPFTVNAAKAGLPQGAIRYFIDR
SVSPEEIYSKYWKEVALISKDSKETQDERSLSTTLLITPNFGLRNREFFE
TFSNTLTQPLEALGLEDEIQLVFFHPEWVFRDGADRMGQDDAANYARRSP
WPMINILRTPQVKKAQKAIPTGLVYRQNEVTLDKIGSGRLRRWLVERDWG
EVKDNFRVDRKTVPILSTAQDLLLGLTPEALSEDAVAVAPPMRDATEKAA
TTKEMVEKKQQEQFQKMMADEGVDEDKDEKGNIDIGEKESVASASAAAYS
AAAAAKAAAANRRFFGGGFENEFGEAGEAAAAAAAAAAAAIGEDDDEDDW
DKPLPQSQIYFMTENDPTRVKRPMGEIIQDSKAVLALLRKRLAQNVPLSP
AEVHDFEERASRMRKD*

mRNA from alignment at scaffold_12:644872..647276-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5172 ID=mRNA_5172|Name=jgi.p|Nanoce1779_2|591622|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp|location=Sequence derived from alignment at scaffold_12:644872..647276- (Nannochloropsis oceanica)
GATAGATTTATCGTTTGTTGTTTTTGTGTCAATGGGAGTGTTCAAGTCAA
GGTGGGGAGGTTGGCTGGCCCGGCTTTTTCCTCACGGCACAGTCCAATCA
TAGAGCGTATCCTATGTGTCTTGCCTCTCACCCGCATCCCTGCACACCTC
GGCACAGGCACAAGTACGACTATTATCCACGCAGCGCCTTGGTCCAACCA
AAGTGTCACAAGGATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCC
TCGCTGCAGCGGCAACCGCATCAACATCAATCCCTCGCCTTGCATCCGCC
TTTCAGGCCCCCGTCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGC
CGCTGCAGCTGCACGACGACAGCAACGTCAACAGCGACAATCATCCCCCG
AGCTCAAGCACACTCCCTTGCAAGCAACTGCCACAAGCAGCGGTAGCAGC
AGCAGCAAGCTCTCAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGA
GCAGCATCAAGGTGCAGGCCCTACTCCCAAGGCTACCGAATATTATCACG
CGTCGCTCGCGGAAGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCG
GAGAAGGCCGAGAAAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCC
AGACGCGGAAAGCTTGTACGACGGGAATTTGATGCGACAATTCGGAGACC
ACTTGGACCTGTGCAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAAT
ACAATTGTCATGCATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGT
GCCTGCTGTCTTGATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGG
ACGACGACCCATATTGGGACGACGATGACGATTCAGCATTTGACTTCTCC
GCGCTGTACAACGATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGA
GCTGGAGAAGCTGTATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAG
GGATGAAGGGGTGGGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCT
TTCACGGTAAATGCGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTA
TTTCATTGATCGGAGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGA
AAGAAGTGGCGTTGATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGT
AGTTTGAGTACAACTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCG
GGAGTTTTTTGAGACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCT
TGGGCTTGGAGGACGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTC
TTCCGCGATGGGGCGGACCGAATGGGCCAAGACGACGCCGCGAACTACGC
TCGGCGCTCGCCCTGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCA
AAAAGGCCCAGAAGGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAG
GTGACCCTCGACAAGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGA
ACGGGACTGGGGGGAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGG
TGCCTATTCTTTCGACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAG
GCTCTGAGTGAGGATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAAC
GGAAAAGGCAGCCACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGC
AATTTCAGAAAATGATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAG
AAGGGAAATATTGATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGC
TGCTGCCTATTCGGCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTC
GTTTTTTTGGGGGGGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCA
GCGGCGGCGGCGGCAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGA
TGAGGATGATTGGGATAAACCCCTTCCGCAGTCACAAATATATTTTATGA
CAGAAAATGATCCGACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAG
GACTCTAAGGCGGTCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGT
GCCTTTGTCTCCTGCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGA
TGAGGAAGGATTAGAAAGAGAGAGGAAGGGAAGGGGGAAAGTTAGAGAGG
GTGTTTTAAGATGACCTCTCTCTGCTCTCGATCATTAAGTGATGAAGGAA
ACGAAAGAACCGCAATTTATTAAGGACAGCCGTTGGTGCTGCTTTGTTTT
CACTGTTTTTATCTTCTTTCTAAAAGTCGTCGCGGTGTATGTGCACGAAA
TTAAC

Coding sequence (CDS) from alignment at scaffold_12:644872..647276-

>mRNA_5172 ID=mRNA_5172|Name=jgi.p|Nanoce1779_2|591622|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at scaffold_12:644872..647276- (Nannochloropsis oceanica)
ATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCCTCGCTGCAGCGGC
AACCGCATCAACATCAATCCCTCGCCTTGCATCCGCCTTTCAGGCCCCCG
TCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGCCGCTGCAGCTGCA
CGACGACAGCAACGTCAACAGCGACAATCATCCCCCGAGCTCAAGCACAC
TCCCTTGCAAGCAACTGCCACAAGCAGCGGTAGCAGCAGCAGCAAGCTCT
CAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGAGCAGCATCAAGGT
GCAGGCCCTACTCCCAAGGCTACCGAATATTATCACGCGTCGCTCGCGGA
AGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCGGAGAAGGCCGAGA
AAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCCAGACGCGGAAAGC
TTGTACGACGGGAATTTGATGCGACAATTCGGAGACCACTTGGACCTGTG
CAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAATACAATTGTCATGC
ATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGTGCCTGCTGTCTTG
ATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGGACGACGACCCATA
TTGGGACGACGATGACGATTCAGCATTTGACTTCTCCGCGCTGTACAACG
ATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGAGCTGGAGAAGCTG
TATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAGGGATGAAGGGGTG
GGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCTTTCACGGTAAATG
CGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTATTTCATTGATCGG
AGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGAAAGAAGTGGCGTT
GATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGTAGTTTGAGTACAA
CTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCGGGAGTTTTTTGAG
ACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCTTGGGCTTGGAGGA
CGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTCTTCCGCGATGGGG
CGGACCGAATGGGCCAAGACGACGCCGCGAACTACGCTCGGCGCTCGCCC
TGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCAAAAAGGCCCAGAA
GGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAGGTGACCCTCGACA
AGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGAACGGGACTGGGGG
GAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGGTGCCTATTCTTTC
GACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAGGCTCTGAGTGAGG
ATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAACGGAAAAGGCAGCC
ACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGCAATTTCAGAAAAT
GATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAGAAGGGAAATATTG
ATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGCTGCTGCCTATTCG
GCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTCGTTTTTTTGGGGG
GGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCAGCGGCGGCGGCGG
CAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGATGAGGATGATTGG
GATAAACCCCTTCCGCAGTCACAAATATATTTTATGACAGAAAATGATCC
GACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAGGACTCTAAGGCGG
TCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGTGCCTTTGTCTCCT
GCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGATGAGGAAGGATTA
G

Synonyms

Publications