jgi.p|Nanoce1779_2|55556, mRNA_5171 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|55556
Unique Name	mRNA_5171
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1335
Alignment location	scaffold_12:641391..642915 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	55642
Track	FilteredModels2
ProteinId	55556

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:641391..642915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|55556	gene_5171	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|55556	mRNA_5171-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5171	CDS_5171	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:641391..642915-
coding sequence from alignment at scaffold_12:641391..642915-

mRNA sequence

>mRNA_5171 ID=mRNA_5171|Name=jgi.p|Nanoce1779_2|55556|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
GAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCA
CCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGAAAGGAAG
GGGGAAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTCAACCGA
ACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCACC
GCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAGGG
GGAAAGGGTTTCCAAGCCCACCCACACACACAAAACGTCCTCAACCGAAC
CTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAAAGAATCACCGC
CCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAGGGGG
AAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTCAAGGGAAAAA
CCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAAT
CACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGA
AGGGGGAAAGGGTTTCCAAGCCCACCCACACACACAAAACGTCCTCAGCC
GAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCA
CCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAG
GGGGAAAGGGTTTCCACGCCCACCCACATACACAAAACGTCCTCAAGGGA
AAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGA
GAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGA
AGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTC
AAGGGAAAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGA
CGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAG
GAAGGAAGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACACACACAAAAC
GTCCTCAGCCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACG
CAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGA
AGGAAGGAAGGGGGAAAGGGTTTCCACGCCCACCCACATACACAAAACGT
CCTCAAGGGAAAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCA
CGGACGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGAT
GAAGGAAGGAAGGAAGGGGGAAAGGGGTTTCCAAG

protein sequence of jgi.p|Nanoce1779_2|55556

>mRNA_5171-protein ID=mRNA_5171-protein|Name=jgi.p|Nanoce1779_2|55556|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MMKEGRKGERVSKPTHIHKTSSREKPNLDGDQRWRRARTQRITAPADRCC
LKMMKEGRKGERVSKPTHTHKTSSAEPRWRSTMATRTDAENHRPSRQVLF
ENDEGRKEGGKGFHAHPHTQNVLKGKTEPRWRSTMATRTDAENHRPSRQV
LFENDEGRKEGGKGFQAHPHTQNVLKGKTEPRWRSTMATRTDAENHRPSR
QVLFENDEGRKEGGKGFQAHPHTQNVLSRTSMAINDGDAHGRRESPPQQT
GAV*

mRNA from alignment at scaffold_12:641391..642915-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5171 ID=mRNA_5171|Name=jgi.p|Nanoce1779_2|55556|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp|location=Sequence derived from alignment at scaffold_12:641391..642915- (Nannochloropsis oceanica)
GAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCA
CCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGAAAGGAAG
GGGGAAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTCAACCGA
ACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCACC
GCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAGGG
GGAAAGGGTTTCCAAGCCCACCCACACACACAAAACGTCCTCAACCGAAC
CTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAAAGAATCACCGC
CCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAGGGGG
AAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTCAAGGGAAAAA
CCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAAT
CACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGA
AGGGGGAAAGGGTTTCCAAGCCCACCCACACACACAAAACGTCCTCAGCC
GAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGAGAATCA
CCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAG
GGGGAAAGGGTTTCCACGCCCACCCACATACACAAAACGTCCTCAAGGGA
AAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACGCAGA
GAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGAAGGA
AGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACATACACAAAACGTCCTC
AAGGGAAAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGA
CGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAG
GAAGGAAGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACACACACAAAAC
GTCCTCAGCCGAACCTCGATGGCGATCAACGATGGCGACGCGCACGGACG
CAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGATGAAGGA
AGGAAGGAAGGGGGAAAGGGTTTCCACGCCCACCCACATACACAAAACGT
CCTCAAGGGAAAAACCGAACCTCGATGGCGATCAACGATGGCGACGCGCA
CGGACGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTTGAAAATGAT
GAAGGAAGGAAGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACAGACAGC
AAAAATCCTTCAATCGAGCGTCCACGTTAATTAAGTAGAAATCGAACCTC
GTGAAGACCAGCGGCGGTGCGTAGACAATGCATATGCATCACCAAAGAGT
GCAATACCCTCGGGCTTCCAGGCCCTGAAGGGAGGTAGGGAAGGAAAGAG
GCAATGGGGGGGAAGGGTTTCCAAG

Coding sequence (CDS) from alignment at scaffold_12:641391..642915-

>mRNA_5171 ID=mRNA_5171|Name=jgi.p|Nanoce1779_2|55556|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_12:641391..642915- (Nannochloropsis oceanica)
ATGATGAAGGAAGGAAGGAAGGGGGAAAGGGTTTCCAAGCCCACCCACAT
ACACAAAACGTCCTCAAGGGAAAAACCGAACCTCGATGGCGATCAACGAT
GGCGACGCGCACGGACGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGT
TTGAAAATGATGAAGGAAGGAAGGAAGGGGGAAAGGGTTTCCAAGCCCAC
CCACACACACAAAACGTCCTCAGCCGAACCTCGATGGCGATCAACGATGG
CGACGCGCACGGACGCAGAGAATCACCGCCCCAGCAGACAGGTGCTGTTT
GAAAATGATGAAGGAAGGAAGGAAGGGGGAAAGGGTTTCCACGCCCACCC
ACATACACAAAACGTCCTCAAGGGAAAAACCGAACCTCGATGGCGATCAA
CGATGGCGACGCGCACGGACGCAGAGAATCACCGCCCCAGCAGACAGGTG
CTGTTTGAAAATGATGAAGGAAGGAAGGAAGGGGGAAAGGGTTTCCAAGC
CCACCCACATACACAAAACGTCCTCAAGGGAAAAACCGAACCTCGATGGC
GATCAACGATGGCGACGCGCACGGACGCAGAGAATCACCGCCCCAGCAGA
CAGGTGCTGTTTGAAAATGATGAAGGAAGGAAGGAAGGGGGAAAGGGTTT
CCAAGCCCACCCACACACACAAAACGTCCTCAGCCGAACCTCGATGGCGA
TCAACGATGGCGACGCGCACGGACGCAGAGAATCACCGCCCCAGCAGACA
GGTGCTGTTTGA

Synonyms

Publications