jgi.p|Nanoce1779_2|591607, mRNA_5170 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591607
Unique Name	mRNA_5170
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1835
Alignment location	scaffold_12:637659..639493 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591693
Track	FilteredModels2
ProteinId	591607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:637659..639493 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591607	gene_5170	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591607	mRNA_5170-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5170	CDS_5170	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:637659..639493+
coding sequence from alignment at scaffold_12:637659..639493+

mRNA sequence

>mRNA_5170 ID=mRNA_5170|Name=jgi.p|Nanoce1779_2|591607|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp
ACAGGGGCAGCTACAGGGTGGAGCCACTGCGAGACGCCCGGGCCGTCAAT
TCGACCGGCAGCATCCAAACTCCCCACCATACCAGCCAAGGCGACCATCC
CTGCGTCATCTGCAGCGCGAAGGCATAAATATCAGGGCTACCCAGCAAAC
TCAAGTAAGCTAATAATATGGGCATCGTATTTTCCATGGGCACCTCGGCG
GCCAGCGCTTTGGCATCCTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTG
CTCGGGTCTGAAGCAGTGCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGT
ACGCCCTCCTCCTCTTCTTCGCGTCGGTTCTCGCCGCCCTCATATTGCGG
AGCACCGAACCTGTTATCAATGCCGAGTATTTCACGGTGCGCTGCACGGG
GGAATACAAAGATCGGTGCTATGGCTTTCAGGCAGTGTATCGTTTGTCGT
TTGTGGATTTCTTCTTCTTTCTGACCTTGGCCATTGGAAGCAAGTTTTCC
GTAGGCGTTCATACGCATGCGTGGGGGCTCAAGTACCTTGTGTATTTGGG
GTTTTTGATTGGTATGTTCTTCGTGGATAACAAGGTCTTTGACGGGTATG
TGCACTTGGCGCGGGTGGCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTG
ACCCTGATAAATTTTTCGTATAACATACACACGTCGTTGATGGGCAAGGC
GGAGGCAGCCGAGGCGAATGGGGAGGAGAGCAATGCCAAATTCTATAAAG
TCGTGTATCTAGGGGTTTCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGG
ATTGCTCTTTTGTATGCGTGGTATGCGCATTGTAAAGTGGCACAGTTTTG
GATCAGTGTGACCTTGCTTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGC
TGGATAGGATAAGCATGGGGCTCTTGACCCCTTCCTTCCTCTTCCTCTAT
TTTAACTACCAATGCTGGTCTGCCATCCTCTCGCATCCCAACCCTGAGTG
TAATAAGACGGCGAACCTCGCCTCTTCTCCCGCCAAGAGCTGGAACACCG
CCGTCGCATTGGTCTTTCTTGCCATCTCGCTCACCTACACAGGCTGGAGT
ACCTACCGTTCAATCGCAGGTTCAGAGCTCCAGGCCGATCAGGTAGAAGC
TGCTGCAGCTGCTGCTACTGGCGATGGTGGAGCGGGAGGGGCGGATATGA
CCAAAATTTTGACAGGCGAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCG
ACAGCTGGGGAGGACGAGGAGGAGGGAAGGGCAGTGGTCCCGACATTGAC
GGCAAGTGACGAGGTGGAAAAGAGTTTGATTTGGATTTTTCATTTGTTGC
TTGCATTGGGGGGTTCGTATATGGCCATGGCGATTACAAATTGGGGCAAT
GCGAATGGAGTGCCGGATGGAGTGGGGGGGGGAGATGCGACGGTGGGGAG
GGAGAGTATGTGGTTGAAGATTGTCAGTCAGTGGATTACGATGATTTTGT
ATATGTGGAGTTTGTGGGCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTAT
TAGGGTGAGGTGTGAAGAGGAGTACAGAGAAGGGAAGGGGAGAAGGGAAG
GGGAGGGCAAGAGGAAAAAGACGTGGGAAGAATCAATGAAATTAGACTGG
GGGTGTTTGTCTGATTCCTCCAGGATGCTGGTTTATGTGAAATCACTTGA
CCCGCTGCTTTTTGAGAGGCTGATTGATCCTTGCTTATTGTTATTATTCG
CTTTCCGTGTGGTAATTAAGTATTTGATTGGATTAGACTGACAAACGTTT
GGATGGTCGGGCCATGGGCCAGGCCGGAACGAGAA

protein sequence of jgi.p|Nanoce1779_2|591607

>mRNA_5170-protein ID=mRNA_5170-protein|Name=jgi.p|Nanoce1779_2|591607|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MGIVFSMGTSAASALASCCVGSAASCVCSGLKQCLPSGYSAAKVYALLLF
FASVLAALILRSTEPVINAEYFTVRCTGEYKDRCYGFQAVYRLSFVDFFF
FLTLAIGSKFSVGVHTHAWGLKYLVYLGFLIGMFFVDNKVFDGYVHLARV
ASLVYLVAQVVTLINFSYNIHTSLMGKAEAAEANGEESNAKFYKVVYLGV
SLLCLSGGLTGIALLYAWYAHCKVAQFWISVTLLVSVACVVSSLLDRISM
GLLTPSFLFLYFNYQCWSAILSHPNPECNKTANLASSPAKSWNTAVALVF
LAISLTYTGWSTYRSIAGSELQADQVEAAAAAATGDGGAGGADMTKILTG
EAAVGGESTAATAGEDEEEGRAVVPTLTASDEVEKSLIWIFHLLLALGGS
YMAMAITNWGNANGVPDGVGGGDATVGRESMWLKIVSQWITMILYMWSLW
APVWRGEGESY*

mRNA from alignment at scaffold_12:637659..639493+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5170 ID=mRNA_5170|Name=jgi.p|Nanoce1779_2|591607|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at scaffold_12:637659..639493+ (Nannochloropsis oceanica)
ACAGGGGCAGCTACAGGGTGGAGCCACTGCGAGACGCCCGGGCCGTCAAT
TCGACCGGCAGCATCCAAACTCCCCACCATACCAGCCAAGGCGACCATCC
CTGCGTCATCTGCAGCGCGAAGGCATAAATATCAGGGCTACCCAGCAAAC
TCAAGTAAGCTAATAATATGGGCATCGTATTTTCCATGGGCACCTCGGCG
GCCAGCGCTTTGGCATCCTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTG
CTCGGGTCTGAAGCAGTGCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGT
ACGCCCTCCTCCTCTTCTTCGCGTCGGTTCTCGCCGCCCTCATATTGCGG
AGCACCGAACCTGTTATCAATGCCGAGTATTTCACGGTGCGCTGCACGGG
GGAATACAAAGATCGGTGCTATGGCTTTCAGGCAGTGTATCGTTTGTCGT
TTGTGGATTTCTTCTTCTTTCTGACCTTGGCCATTGGAAGCAAGTTTTCC
GTAGGCGTTCATACGCATGCGTGGGGGCTCAAGTACCTTGTGTATTTGGG
GTTTTTGATTGGTATGTTCTTCGTGGATAACAAGGTCTTTGACGGGTATG
TGCACTTGGCGCGGGTGGCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTG
ACCCTGATAAATTTTTCGTATAACATACACACGTCGTTGATGGGCAAGGC
GGAGGCAGCCGAGGCGAATGGGGAGGAGAGCAATGCCAAATTCTATAAAG
TCGTGTATCTAGGGGTTTCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGG
ATTGCTCTTTTGTATGCGTGGTATGCGCATTGTAAAGTGGCACAGTTTTG
GATCAGTGTGACCTTGCTTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGC
TGGATAGGATAAGCATGGGGCTCTTGACCCCTTCCTTCCTCTTCCTCTAT
TTTAACTACCAATGCTGGTCTGCCATCCTCTCGCATCCCAACCCTGAGTG
TAATAAGACGGCGAACCTCGCCTCTTCTCCCGCCAAGAGCTGGAACACCG
CCGTCGCATTGGTCTTTCTTGCCATCTCGCTCACCTACACAGGCTGGAGT
ACCTACCGTTCAATCGCAGGTTCAGAGCTCCAGGCCGATCAGGTAGAAGC
TGCTGCAGCTGCTGCTACTGGCGATGGTGGAGCGGGAGGGGCGGATATGA
CCAAAATTTTGACAGGCGAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCG
ACAGCTGGGGAGGACGAGGAGGAGGGAAGGGCAGTGGTCCCGACATTGAC
GGCAAGTGACGAGGTGGAAAAGAGTTTGATTTGGATTTTTCATTTGTTGC
TTGCATTGGGGGGTTCGTATATGGCCATGGCGATTACAAATTGGGGCAAT
GCGAATGGAGTGCCGGATGGAGTGGGGGGGGGAGATGCGACGGTGGGGAG
GGAGAGTATGTGGTTGAAGATTGTCAGTCAGTGGATTACGATGATTTTGT
ATATGTGGAGTTTGTGGGCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTAT
TAGGGTGAGGTGTGAAGAGGAGTACAGAGAAGGGAAGGGGAGAAGGGAAG
GGGAGGGCAAGAGGAAAAAGACGTGGGAAGAATCAATGAAATTAGACTGG
GGGTGTTTGTCTGATTCCTCCAGGATGCTGGTTTATGTGAAATCACTTGA
CCCGCTGCTTTTTGAGAGGCTGATTGATCCTTGCTTATTGTTATTATTCG
CTTTCCGTGTGGTAATTAAGTATTTGATTGGATTAGACTGACAAACGTTT
GGATGGTCGGGCCATGGGCCAGGCCGGAACGAGAA

Coding sequence (CDS) from alignment at scaffold_12:637659..639493+

>mRNA_5170 ID=mRNA_5170|Name=jgi.p|Nanoce1779_2|591607|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_12:637659..639493+ (Nannochloropsis oceanica)
ATGGGCATCGTATTTTCCATGGGCACCTCGGCGGCCAGCGCTTTGGCATC
CTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTGCTCGGGTCTGAAGCAGT
GCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGTACGCCCTCCTCCTCTTC
TTCGCGTCGGTTCTCGCCGCCCTCATATTGCGGAGCACCGAACCTGTTAT
CAATGCCGAGTATTTCACGGTGCGCTGCACGGGGGAATACAAAGATCGGT
GCTATGGCTTTCAGGCAGTGTATCGTTTGTCGTTTGTGGATTTCTTCTTC
TTTCTGACCTTGGCCATTGGAAGCAAGTTTTCCGTAGGCGTTCATACGCA
TGCGTGGGGGCTCAAGTACCTTGTGTATTTGGGGTTTTTGATTGGTATGT
TCTTCGTGGATAACAAGGTCTTTGACGGGTATGTGCACTTGGCGCGGGTG
GCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTGACCCTGATAAATTTTTC
GTATAACATACACACGTCGTTGATGGGCAAGGCGGAGGCAGCCGAGGCGA
ATGGGGAGGAGAGCAATGCCAAATTCTATAAAGTCGTGTATCTAGGGGTT
TCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGGATTGCTCTTTTGTATGC
GTGGTATGCGCATTGTAAAGTGGCACAGTTTTGGATCAGTGTGACCTTGC
TTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGCTGGATAGGATAAGCATG
GGGCTCTTGACCCCTTCCTTCCTCTTCCTCTATTTTAACTACCAATGCTG
GTCTGCCATCCTCTCGCATCCCAACCCTGAGTGTAATAAGACGGCGAACC
TCGCCTCTTCTCCCGCCAAGAGCTGGAACACCGCCGTCGCATTGGTCTTT
CTTGCCATCTCGCTCACCTACACAGGCTGGAGTACCTACCGTTCAATCGC
AGGTTCAGAGCTCCAGGCCGATCAGGTAGAAGCTGCTGCAGCTGCTGCTA
CTGGCGATGGTGGAGCGGGAGGGGCGGATATGACCAAAATTTTGACAGGC
GAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCGACAGCTGGGGAGGACGA
GGAGGAGGGAAGGGCAGTGGTCCCGACATTGACGGCAAGTGACGAGGTGG
AAAAGAGTTTGATTTGGATTTTTCATTTGTTGCTTGCATTGGGGGGTTCG
TATATGGCCATGGCGATTACAAATTGGGGCAATGCGAATGGAGTGCCGGA
TGGAGTGGGGGGGGGAGATGCGACGGTGGGGAGGGAGAGTATGTGGTTGA
AGATTGTCAGTCAGTGGATTACGATGATTTTGTATATGTGGAGTTTGTGG
GCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTATTAG

Synonyms

Publications