jgi.p|Nanoce1779_2|577551, mRNA_517 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577551
Unique Name	mRNA_517
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1634
Alignment location	scaffold_3:1252258..1253891 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577637
Track	FilteredModels2
ProteinId	577551

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1252258..1253891 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577551	gene_517	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577551	mRNA_517-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_517	CDS_517	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1252258..1253891+
coding sequence from alignment at scaffold_3:1252258..1253891+

mRNA sequence

>mRNA_517 ID=mRNA_517|Name=jgi.p|Nanoce1779_2|577551|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp
ACAGCACCATGATCAGGGCGGTGACAAGCTCGTTGGATCCCCCTGCCGCC
CTCTTGTCCCTGGGTACCAATGACCTCGTAATCGACGCACCCGTCGCCTC
TGCCTCCGCCACACCGTTGAAGCAAGAGGAGCTGACCCTCTCCAATTTAG
GTCAAGTCCGCTGCCATCCCGATCAGTATATATGGAATCTGCGCCTACCC
TCGGCGGACGAGATGCAGCGTGAACTTGAGGCGGCACTAGCGGTGCCAGG
CCTCACCGCTCAAAACAGTACCATGCTAATTTTGCACACTGCCACTGCCA
CCTCGCGCGACTATACCCCCTTGCGCAGCTTGGCTCGAAAGCTCGAGCCC
AAGAATTTACTGATTGTCACTGGCGCACTTCCTGGTCCCATCTCACTCGA
TGCCAAACCTGAGCGCGTGAGCAAAGACTTAGTTCACACGCTCAGATTTG
GTATCCCTCTTGTTCCTCCCGCAGCCACGAGGGAGACGGACGCAGTAACA
GAAAAGGAGGAGGCAGTGGAAAACCCTGCTTTGCTCTCGACAAGTGAGCG
GATCGGTGCGGGGTTCATCGGACTGGTGGATCTCAATGGGCTGAACAAAA
TATGGCCTGAGAAAGAGAGGGAGGGGAGAGAGGACCTTCTCCTTCAATCC
CTTGCTTATGCCTCAAGGGAAAGCAGCGGTGCCCCCATCTTCATCACCAC
ACAAGACGCTTTCGGTCGAGCACCTTTCGATGGAAAGAGAATACATGCTG
TATTTTCTACTCTTATAAAATACGGTGCGGACAAGACGCGGATTGTCTTC
TGTCGGTGCCCTTGCCGTCTAGATCTTGAAGACGCCTATAATGCCCTCCT
TACTGATGGTGTCCACGTATCCTTCTCTTTTCATGGCAACGCCTTCTACC
CTCTCTCCCCCCCTGTTCAAAAATGTGCTGAATCCACCTTGGGCTTCAAA
ACCGTTGACTCCCCTTCCGATGAGGAAGGGGCGTGTCTCCTCTCGAGGCT
CTGCAGGAAAGGATTTTCTTCCCAATTGCATCTCTCTCACTCCATCGACT
GCCGCATAAAGTTACAAAAATATGGCGGCTTCGGTTACACTCATCTTTTC
TTAAATGTTTCCCCTCGTTTTGAGCGCTTGGAAGTCAGTCGTTGTGATGT
AGAGAGAATGAATGGAGCCAATCTGCGGGATCTACTGGCATGGTGGACCC
CGCCGCCAAAGCAAGAGAAGGAGGTAGAAATGGGGACATGCTCGTGGTGT
CACAAGGAGTTTGAGATGCAGGAGAACATGTATTTTACCAAGTTTTCGTA
TGTGTACTGTAGGAGTAAGTGTCTGAGCAAGCATGGAGATACCGGGTGGA
CTCCGATCCAAACATAATGAAATTTATAGGCGGTCCTGCCGGAGAAGCCG
GGACCAACGATTGCTTTGATTTCTTAGGATTAAAGAGGAGATGGCAGCGG
ATTTAACGAGGTGGTTTGGAACTCACTCATTACCCCGGGTAGCGGCGTCA
TCTCCGGGGTCGGCGGCGTGCTTTGTAGAGATCCGCTCCCTTGGTAATGA
TCCCGAATCGCTTCGCTAGATACTGCCGCCATCTCCTCTCTGACCCAAAG
AAATCAGAGCAATTAGCCTGAAGTAAATATGAAC

protein sequence of jgi.p|Nanoce1779_2|577551

>mRNA_517-protein ID=mRNA_517-protein|Name=jgi.p|Nanoce1779_2|577551|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MIRAVTSSLDPPAALLSLGTNDLVIDAPVASASATPLKQEELTLSNLGQV
RCHPDQYIWNLRLPSADEMQRELEAALAVPGLTAQNSTMLILHTATATSR
DYTPLRSLARKLEPKNLLIVTGALPGPISLDAKPERVSKDLVHTLRFGIP
LVPPAATRETDAVTEKEEAVENPALLSTSERIGAGFIGLVDLNGLNKIWP
EKEREGREDLLLQSLAYASRESSGAPIFITTQDAFGRAPFDGKRIHAVFS
TLIKYGADKTRIVFCRCPCRLDLEDAYNALLTDGVHVSFSFHGNAFYPLS
PPVQKCAESTLGFKTVDSPSDEEGACLLSRLCRKGFSSQLHLSHSIDCRI
KLQKYGGFGYTHLFLNVSPRFERLEVSRCDVERMNGANLRDLLAWWTPPP
KQEKEVEMGTCSWCHKEFEMQENMYFTKFSYVYCRSKCLSKHGDTGWTPI
QT*

mRNA from alignment at scaffold_3:1252258..1253891+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_517 ID=mRNA_517|Name=jgi.p|Nanoce1779_2|577551|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at scaffold_3:1252258..1253891+ (Nannochloropsis oceanica)
ACAGCACCATGATCAGGGCGGTGACAAGCTCGTTGGATCCCCCTGCCGCC
CTCTTGTCCCTGGGTACCAATGACCTCGTAATCGACGCACCCGTCGCCTC
TGCCTCCGCCACACCGTTGAAGCAAGAGGAGCTGACCCTCTCCAATTTAG
GTCAAGTCCGCTGCCATCCCGATCAGTATATATGGAATCTGCGCCTACCC
TCGGCGGACGAGATGCAGCGTGAACTTGAGGCGGCACTAGCGGTGCCAGG
CCTCACCGCTCAAAACAGTACCATGCTAATTTTGCACACTGCCACTGCCA
CCTCGCGCGACTATACCCCCTTGCGCAGCTTGGCTCGAAAGCTCGAGCCC
AAGAATTTACTGATTGTCACTGGCGCACTTCCTGGTCCCATCTCACTCGA
TGCCAAACCTGAGCGCGTGAGCAAAGACTTAGTTCACACGCTCAGATTTG
GTATCCCTCTTGTTCCTCCCGCAGCCACGAGGGAGACGGACGCAGTAACA
GAAAAGGAGGAGGCAGTGGAAAACCCTGCTTTGCTCTCGACAAGTGAGCG
GATCGGTGCGGGGTTCATCGGACTGGTGGATCTCAATGGGCTGAACAAAA
TATGGCCTGAGAAAGAGAGGGAGGGGAGAGAGGACCTTCTCCTTCAATCC
CTTGCTTATGCCTCAAGGGAAAGCAGCGGTGCCCCCATCTTCATCACCAC
ACAAGACGCTTTCGGTCGAGCACCTTTCGATGGAAAGAGAATACATGCTG
TATTTTCTACTCTTATAAAATACGGTGCGGACAAGACGCGGATTGTCTTC
TGTCGGTGCCCTTGCCGTCTAGATCTTGAAGACGCCTATAATGCCCTCCT
TACTGATGGTGTCCACGTATCCTTCTCTTTTCATGGCAACGCCTTCTACC
CTCTCTCCCCCCCTGTTCAAAAATGTGCTGAATCCACCTTGGGCTTCAAA
ACCGTTGACTCCCCTTCCGATGAGGAAGGGGCGTGTCTCCTCTCGAGGCT
CTGCAGGAAAGGATTTTCTTCCCAATTGCATCTCTCTCACTCCATCGACT
GCCGCATAAAGTTACAAAAATATGGCGGCTTCGGTTACACTCATCTTTTC
TTAAATGTTTCCCCTCGTTTTGAGCGCTTGGAAGTCAGTCGTTGTGATGT
AGAGAGAATGAATGGAGCCAATCTGCGGGATCTACTGGCATGGTGGACCC
CGCCGCCAAAGCAAGAGAAGGAGGTAGAAATGGGGACATGCTCGTGGTGT
CACAAGGAGTTTGAGATGCAGGAGAACATGTATTTTACCAAGTTTTCGTA
TGTGTACTGTAGGAGTAAGTGTCTGAGCAAGCATGGAGATACCGGGTGGA
CTCCGATCCAAACATAATGAAATTTATAGGCGGTCCTGCCGGAGAAGCCG
GGACCAACGATTGCTTTGATTTCTTAGGATTAAAGAGGAGATGGCAGCGG
ATTTAACGAGGTGGTTTGGAACTCACTCATTACCCCGGGTAGCGGCGTCA
TCTCCGGGGTCGGCGGCGTGCTTTGTAGAGATCCGCTCCCTTGGTAATGA
TCCCGAATCGCTTCGCTAGATACTGCCGCCATCTCCTCTCTGACCCAAAG
AAATCAGAGCAATTAGCCTGAAGTAAATATGAAC

Coding sequence (CDS) from alignment at scaffold_3:1252258..1253891+

>mRNA_517 ID=mRNA_517|Name=jgi.p|Nanoce1779_2|577551|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_3:1252258..1253891+ (Nannochloropsis oceanica)
ATGATCAGGGCGGTGACAAGCTCGTTGGATCCCCCTGCCGCCCTCTTGTC
CCTGGGTACCAATGACCTCGTAATCGACGCACCCGTCGCCTCTGCCTCCG
CCACACCGTTGAAGCAAGAGGAGCTGACCCTCTCCAATTTAGGTCAAGTC
CGCTGCCATCCCGATCAGTATATATGGAATCTGCGCCTACCCTCGGCGGA
CGAGATGCAGCGTGAACTTGAGGCGGCACTAGCGGTGCCAGGCCTCACCG
CTCAAAACAGTACCATGCTAATTTTGCACACTGCCACTGCCACCTCGCGC
GACTATACCCCCTTGCGCAGCTTGGCTCGAAAGCTCGAGCCCAAGAATTT
ACTGATTGTCACTGGCGCACTTCCTGGTCCCATCTCACTCGATGCCAAAC
CTGAGCGCGTGAGCAAAGACTTAGTTCACACGCTCAGATTTGGTATCCCT
CTTGTTCCTCCCGCAGCCACGAGGGAGACGGACGCAGTAACAGAAAAGGA
GGAGGCAGTGGAAAACCCTGCTTTGCTCTCGACAAGTGAGCGGATCGGTG
CGGGGTTCATCGGACTGGTGGATCTCAATGGGCTGAACAAAATATGGCCT
GAGAAAGAGAGGGAGGGGAGAGAGGACCTTCTCCTTCAATCCCTTGCTTA
TGCCTCAAGGGAAAGCAGCGGTGCCCCCATCTTCATCACCACACAAGACG
CTTTCGGTCGAGCACCTTTCGATGGAAAGAGAATACATGCTGTATTTTCT
ACTCTTATAAAATACGGTGCGGACAAGACGCGGATTGTCTTCTGTCGGTG
CCCTTGCCGTCTAGATCTTGAAGACGCCTATAATGCCCTCCTTACTGATG
GTGTCCACGTATCCTTCTCTTTTCATGGCAACGCCTTCTACCCTCTCTCC
CCCCCTGTTCAAAAATGTGCTGAATCCACCTTGGGCTTCAAAACCGTTGA
CTCCCCTTCCGATGAGGAAGGGGCGTGTCTCCTCTCGAGGCTCTGCAGGA
AAGGATTTTCTTCCCAATTGCATCTCTCTCACTCCATCGACTGCCGCATA
AAGTTACAAAAATATGGCGGCTTCGGTTACACTCATCTTTTCTTAAATGT
TTCCCCTCGTTTTGAGCGCTTGGAAGTCAGTCGTTGTGATGTAGAGAGAA
TGAATGGAGCCAATCTGCGGGATCTACTGGCATGGTGGACCCCGCCGCCA
AAGCAAGAGAAGGAGGTAGAAATGGGGACATGCTCGTGGTGTCACAAGGA
GTTTGAGATGCAGGAGAACATGTATTTTACCAAGTTTTCGTATGTGTACT
GTAGGAGTAAGTGTCTGAGCAAGCATGGAGATACCGGGTGGACTCCGATC
CAAACATAA

Synonyms

Publications