Properties
| Property Name | Value |
|---|
| TranscriptId | 625733 |
| Track | FilteredModels2 |
| ProteinId | 625647 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:630997..633770 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5167 ID=mRNA_5167|Name=jgi.p|Nanoce1779_2|625647|organism=Nannochloropsis oceanica|type=mRNA|length=2644bp
AGGTGCCTGTCACATCTCGACCTCGCCTAAACAGAGCTGGTCGTCTTGCT
TATAACGCTACTCGACTGCGTGCTCCTGTTGGCCTACGCCCTAGCCACTA
TCTAGATTCTTCGAGCCGTCAACTGCCCAGGTACTTGTTCGAGCCCGGCC
TCGCCGTTGCCCGTATCCGTCGTCCCGCGCCCATCCCCGTCCAATCATGT
CGGCGACGACGAACGGCAAGGGCTCGGCCGCGCCTCCCGGCGCGCGGTGG
AACAAGGGCCGCGGCTGGGATGGCATTGGCAACTGGTGCGACGACGCCAC
AGCCGAAGAGATTTGTTTGGCCGTGGACAAGCTCTCGGCGGAGGATAAGC
GGTTGACGGTCGTTAAGGCAATCAAGTTCTTGTTGTCCTCCTACGCGGAG
AAGCGAGCGTTGACGTATTTAGATGGAAAGGGGCAAGAAATCGAGGTGCA
GACGTTTTCGGACGTGATGGACTGCGCTGATCGCATTGCAGCCTACTTGC
AGCGGGAGATGGGCTTGCGTCCTGGTGACCGGGCCGTCCTACTCTACCCG
CCTGGTCAAGAGTTTATCTTGGCCTTTTTGGGGTGCATTGTGGCTGGCGT
GGTGGCCGTGCCTGTGTACCCTCCCCACCCCTACCGGATGGAGACAGACC
TTCCTCGGTTAAATATGATTGTGAATAACTCCGGCTGCAAAGTAGCTCTG
ACAGACTCTCAGTACATGTTGGTCATCCGCGGCATAGCCGTCAAGAACAT
GCTCTCCCGCGTCGGCCTCGCCAAGGGCGCCACCTGGCCCAACCTCCGCA
ACGTACAAACAGACAAGATCCGCAAGTCATACGCACATACAGAGCTCCTC
GTTGAACCCGACCCTGACCCAGATGACCTTGCATTTCTGCAGTACACCTC
CGGCTCCACCTCCTTCCCGAAGGGTGTGATGGTGACCCATGCAAACCTTA
TTGCACAGGTCCGCCTCCTCTCCCTCCGTTCCGTCGGCATCTTCGGATAC
ACCAACCAGCTGAACGTCGTCTCGTGGCTTCCGCAATACCACGACATGGG
TTTGATCGGGATCTTCCTGGAGTGCCTCTCCACTGGGACCCACCTCATCT
ATATGACTCCCATCTCCTTCCTCCAAGATCCGACCATGTGGCTTTACACT
CTCCACCGCTACCGTGCCGCTGTCACCTGTGCACCGAATTTTGCCTTTGC
CCTCGCCCAGCGCAAGACTTCGGAGGCCCTTCGTGATAGTATGGACTTGT
CGTGCATTCAGTGCGTGATTTGCGGGGCCGAGCCGATCAGGGTTGAGGTG
ATGCAATCTTTCTTCGCGTTTTTTGCCAAGAGTAAATTTGATCCTAAGGT
CCTCATGCCTGCTTATGGTCTGGCGGAGTTCACCTTGTGTGCGACTTCCC
AGCCATCGGGGAGGGTGTTGAACGTGCTGTATGTGGATCAGCAGGTGTTG
GGGTCGACGGGAAAGGTTGTGTTGGTACCTGAGGACACGCCGGGGGCTGC
ATGCTATGTGGGGGTGGGAGGACCTTATAAGGAGGATGGGACGCAGTGTC
GAATCGTAAATCCAGACACGAGGGTTTGTCAGGGGCAGGGGCATATTGGG
GAGATTTGGCTGGATGGCCCGAGTAAGACGAAAGGTTACTTTGATGACGA
TGTAAAGACGCAGGAGTCGTTTAGGGGATTAATAAAGGGAGAGGAGGACT
CGGGGCATGTGTATTTGCAGACGGGGGATCAAGGCTTTCTATGGCATGGT
GAATTGTTCATCACTGGACGGATCAAGGATTTGATTATTGTGAGGGGGCG
GAATTTGTACCCCCAGGATATTGAGTATGCGGTAGAAGCGGGATTAGATA
GCATGTTGCGCCCGGGCTGCTCCGGTTCGTTCTCCCTGGATTGCAATGGG
GAGGAGACTGTTGCGTATGTCGCTGAATTGCGAAATAACACAACCGATCA
TACGTTGCTCCAGGGGACGGTGGATCAGATTCGGAGATTAATCGCCGAGG
AGTTCCAGGTGGCTGTCTCGGTGGTGGTGCTTGTCGAACCTCGTTCCATC
CCCAAAACTACCTCCGGGAAGATTCAACGGCATAAGTGTAAATTGGGCTA
CCGCGATGGTTCCCTCAAGACGGCATTCCTGTGGGAGGCCGAGCCGAGTT
CGAAGACGATTTCTCTTCGCCTGAGACCAATTACCAACGTAGCCCGATGA
AGAGGAGGACGTCCTCGCTTCTGGGATCCGCATCGGGAATGGCTCCTGTC
AAGCTTCCTGCCGTTGGGGAGGTGCCCGCGGCGACGGGCAGCCCTGCTGG
GGAGGAGGAGCGGCAGGAACAGGAGCAGATATTGGGTGCAGACCATTGGG
ACGTGCCCTCCCCTGTGGCAGTGCAGTCTCGCAGTAAGCAGGAGGGGGAG
GGGGATGACGGGGAGGAGGGAGGGATTACAAAGGAGCATGAGGCGTTTAT
TGACCTGTTGGTGGATTATGTGGTTAAGACTCGAGAGATCCAAAAAGAAA
GCGTCGACATCGACCAGCCTATGTCTTTGTTGGGATTTGATTCCGCAGGA
TTTGTGGCGTTGGGGAGGGTAATGGGGGAGTGGGTGGGAAAAGAGATCTC
GCCGGCGATTGTGTACAAGTACACGACCATTCGAGAGATTGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|625647 >mRNA_5167-protein ID=mRNA_5167-protein|Name=jgi.p|Nanoce1779_2|625647|organism=Nannochloropsis oceanica|type=polypeptide|length=668bp
MSATTNGKGSAAPPGARWNKGRGWDGIGNWCDDATAEEICLAVDKLSAED
KRLTVVKAIKFLLSSYAEKRALTYLDGKGQEIEVQTFSDVMDCADRIAAY
LQREMGLRPGDRAVLLYPPGQEFILAFLGCIVAGVVAVPVYPPHPYRMET
DLPRLNMIVNNSGCKVALTDSQYMLVIRGIAVKNMLSRVGLAKGATWPNL
RNVQTDKIRKSYAHTELLVEPDPDPDDLAFLQYTSGSTSFPKGVMVTHAN
LIAQVRLLSLRSVGIFGYTNQLNVVSWLPQYHDMGLIGIFLECLSTGTHL
IYMTPISFLQDPTMWLYTLHRYRAAVTCAPNFAFALAQRKTSEALRDSMD
LSCIQCVICGAEPIRVEVMQSFFAFFAKSKFDPKVLMPAYGLAEFTLCAT
SQPSGRVLNVLYVDQQVLGSTGKVVLVPEDTPGAACYVGVGGPYKEDGTQ
CRIVNPDTRVCQGQGHIGEIWLDGPSKTKGYFDDDVKTQESFRGLIKGEE
DSGHVYLQTGDQGFLWHGELFITGRIKDLIIVRGRNLYPQDIEYAVEAGL
DSMLRPGCSGSFSLDCNGEETVAYVAELRNNTTDHTLLQGTVDQIRRLIA
EEFQVAVSVVVLVEPRSIPKTTSGKIQRHKCKLGYRDGSLKTAFLWEAEP
SSKTISLRLRPITNVAR* back to topmRNA from alignment at scaffold_12:630997..633770- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5167 ID=mRNA_5167|Name=jgi.p|Nanoce1779_2|625647|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp|location=Sequence derived from alignment at scaffold_12:630997..633770- (Nannochloropsis oceanica)
AGGTGCCTGTCACATCTCGACCTCGCCTAAACAGAGCTGGTCGTCTTGCT
TATAACGCTACTCGACTGCGTGCTCCTGTTGGCCTACGCCCTAGCCACTA
TCTAGATTCTTCGAGCCGTCAACTGCCCAGGTACTTGTTCGAGCCCGGCC
TCGCCGTTGCCCGTATCCGTCGTCCCGCGCCCATCCCCGTCCAATCATGT
CGGCGACGACGAACGGCAAGGGCTCGGCCGCGCCTCCCGGCGCGCGGTGG
AACAAGGGCCGCGGCTGGGATGGCATTGGCAACTGGTGCGACGACGCCAC
AGCCGAAGAGATTTGTTTGGCCGTGGACAAGCTCTCGGCGGAGGATAAGC
GGTTGACGGTCGTTAAGGCAATCAAGTTCTTGTTGTCCTCCTACGCGGAG
AAGCGAGCGTTGACGTATTTAGATGGAAAGGGGCAAGAAATCGAGGTGCA
GACGTTTTCGGACGTGATGGACTGCGCTGATCGCATTGCAGCCTACTTGC
AGCGGGAGATGGGCTTGCGTCCTGGTGACCGGGCCGTCCTACTCTACCCG
CCTGGTCAAGAGTTTATCTTGGCCTTTTTGGGGTGCATTGTGGCTGGCGT
GGTGGCCGTGCCTGTGTACCCTCCCCACCCCTACCGGATGGAGACAGACC
TTCCTCGGTTAAATATGATTGTGAATAACTCCGGCTGCAAAGTAGCTCTG
ACAGACTCTCAGTACATGTTGGTCATCCGCGGCATAGCCGTCAAGAACAT
GCTCTCCCGCGTCGGCCTCGCCAAGGGCGCCACCTGGCCCAACCTCCGCA
ACGTACAAACAGACAAGATCCGCAAGTCATACGCACATACAGAGCTCCTC
GTTGAACCCGACCCTGACCCAGATGACCTTGCATTTCTGCAGTACACCTC
CGGCTCCACCTCCTTCCCGAAGGGTGTGATGGTGACCCATGCAAACCTTA
TTGCACAGGTCCGCCTCCTCTCCCTCCGTTCCGTCGGCATCTTCGGATAC
ACCAACCAGCTGAACGTCGTCTCGTGGCTTCCGCAATACCACGACATGGG
TTTGATCGGGATCTTCCTGGAGTGCCTCTCCACTGGGACCCACCTCATCT
ATATGACTCCCATCTCCTTCCTCCAAGATCCGACCATGTGGCTTTACACT
CTCCACCGCTACCGTGCCGCTGTCACCTGTGCACCGAATTTTGCCTTTGC
CCTCGCCCAGCGCAAGACTTCGGAGGCCCTTCGTGATAGTATGGACTTGT
CGTGCATTCAGTGCGTGATTTGCGGGGCCGAGCCGATCAGGGTTGAGGTG
ATGCAATCTTTCTTCGCGTTTTTTGCCAAGAGTAAATTTGATCCTAAGGT
CCTCATGCCTGCTTATGGTCTGGCGGAGTTCACCTTGTGTGCGACTTCCC
AGCCATCGGGGAGGGTGTTGAACGTGCTGTATGTGGATCAGCAGGTGTTG
GGGTCGACGGGAAAGGTTGTGTTGGTACCTGAGGACACGCCGGGGGCTGC
ATGCTATGTGGGGGTGGGAGGACCTTATAAGGAGGATGGGACGCAGTGTC
GAATCGTAAATCCAGACACGAGGGTTTGTCAGGGGCAGGGGCATATTGGG
GAGATTTGGCTGGATGGCCCGAGTAAGACGAAAGGTTACTTTGATGACGA
TGTAAAGACGCAGGAGTCGTTTAGGGGATTAATAAAGGGAGAGGAGGACT
CGGGGCATGTGTATTTGCAGACGGGGGATCAAGGCTTTCTATGGCATGGT
GAATTGTTCATCACTGGACGGATCAAGGATTTGATTATTGTGAGGGGGCG
GAATTTGTACCCCCAGGATATTGAGTATGCGGTAGAAGCGGGATTAGATA
GCATGTTGCGCCCGGGCTGCTCCGGTTCGTTCTCCCTGGATTGCAATGGG
GAGGAGACTGTTGCGTATGTCGCTGAATTGCGAAATAACACAACCGATCA
TACGTTGCTCCAGGGGACGGTGGATCAGATTCGGAGATTAATCGCCGAGG
AGTTCCAGGTGGCTGTCTCGGTGGTGGTGCTTGTCGAACCTCGTTCCATC
CCCAAAACTACCTCCGGGAAGATTCAACGGCATAAGTGTAAATTGGGCTA
CCGCGATGGTTCCCTCAAGACGGCATTCCTGTGGGAGGCCGTGGGTAGCG
CTAACGGACTTGCACTTCCCCCTCCTACCAAGGTGGACGTCCTCGCCTTG
AGCTTGAACAGTCAGAACGGTGACGATGATGCCATGTCGGACGACTCGTT
TGTGTCTGCAACCTTTGGAGGAGCCGAGTTCGAAGACGATTTCTCTTCGC
CTGAGACCAATTACCAACGTAGCCCGATGAAGAGGAGGACGTCCTCGCTT
CTGGGATCCGCATCGGGAATGGCTCCTGTCAAGCTTCCTGCCGTTGGGGA
GGTGCCCGCGGCGACGGGCAGCCCTGCTGGGGAGGAGGAGCGGCAGGAAC
AGGAGCAGATATTGGGTGCAGACCATTGGGACGTGCCCTCCCCTGTGGCA
GTGCAGTCTCGCAGTAAGCAGGAGGGGGAGGGGGATGACGGGGAGGAGGG
AGGGATTACAAAGGAGCATGAGGCGTTTATTGACCTGTTGGTGGATTATG
TGGTTAAGACTCGAGAGATCCAAAAAGAAAGCGTCGACATCGACCAGCCT
ATGTCTTTGTTGGGATTTGATTCCGCAGGATTTGTGGCGTTGGGGAGGGT
AATGGGGGAGTGGGTGGGAAAAGAGATCTCGCCGGCGATTGTGTACAAGT
ACACGACCATTCGAGAGATTGCAG back to topCoding sequence (CDS) from alignment at scaffold_12:630997..633770- >mRNA_5167 ID=mRNA_5167|Name=jgi.p|Nanoce1779_2|625647|organism=Nannochloropsis oceanica|type=CDS|length=4008bp|location=Sequence derived from alignment at scaffold_12:630997..633770- (Nannochloropsis oceanica)
GAGCCGAGTTCGAAGACGATTTCTCTTCGCCTGAGACCAATTACCAACGT
AGCCCGATGAATGTCGGCGACGACGAACGGCAAGGGCTCGGCCGCGCCTC
CCGGCGCGCGGTGGAACAAGGGCCGCGGCTGGGATGGCATTGGCAACTGG
TGCGACGACGCCACAGCCGAAGAGATTTGTTTGGCCGTGGACAAGCTCTC
GGCGGAGGATAAGCGGTTGACGGTCGTTAAGGCAATCAAGTTCTTGTTGT
CCTCCTACGCGGAGAAGCGAGCGTTGACGTATTTAGATGGAAAGGGGCAA
GAAATCGAGGTGCAGACGTTTTCGGACGTGATGGACTGCGCTGATCGCAT
TGCAGCCTACTTGCAGCGGGAGATGGGCTTGCGTCCTGGTGACCGGGCCG
TCCTACTCTACCCGCCTGGTCAAGAGTTTATCTTGGCCTTTTTGGGGTGC
ATTGTGGCTGGCGTGGTGGCCGTGCCTGTGTACCCTCCCCACCCCTACCG
GATGGAGACAGACCTTCCTCGGTTAAATATGATTGTGAATAACTCCGGCT
GCAAAGTAGCTCTGACAGACTCTCAGTACATGTTGGTCATCCGCGGCATA
GCCGTCAAGAACATGCTCTCCCGCGTCGGCCTCGCCAAGGGCGCCACCTG
GCCCAACCTCCGCAACGTACAAACAGACAAGATCCGCAAGTCATACGCAC
ATACAGAGCTCCTCGTTGAACCCGACCCTGACCCAGATGACCTTGCATTT
CTGCAGTACACCTCCGGCTCCACCTCCTTCCCGAAGGGTGTGATGGTGAC
CCATGCAAACCTTATTGCACAGGTCCGCCTCCTCTCCCTCCGTTCCGTCG
GCATCTTCGGATACACCAACCAGCTGAACGTCGTCTCGTGGCTTCCGCAA
TACCACGACATGGGTTTGATCGGGATCTTCCTGGAGTGCCTCTCCACTGG
GACCCACCTCATCTATATGACTCCCATCTCCTTCCTCCAAGATCCGACCA
TGTGGCTTTACACTCTCCACCGCTACCGTGCCGCTGTCACCTGTGCACCG
AATTTTGCCTTTGCCCTCGCCCAGCGCAAGACTTCGGAGGCCCTTCGTGA
TAGTATGGACTTGTCGTGCATTCAGTGCGTGATTTGCGGGGCCGAGCCGA
TCAGGGTTGAGGTGATGCAATCTTTCTTCGCGTTTTTTGCCAAGAGTAAA
TTTGATCCTAAGGTCCTCATGCCTGCTTATGGTCTGGCGGAGTTCACCTT
GTGTGCGACTTCCCAGCCATCGGGGAGGGTGTTGAACGTGCTGTATGTGG
ATCAGCAGGTGTTGGGGTCGACGGGAAAGGTTGTGTTGGTACCTGAGGAC
ACGCCGGGGGCTGCATGCTATGTGGGGGTGGGAGGACCTTATAAGGAGGA
TGGGACGCAGTGTCGAATCGTAAATCCAGACACGAGGGTTTGTCAGGGGC
AGGGGCATATTGGGGAGATTTGGCTGGATGGCCCGAGTAAGACGAAAGGT
TACTTTGATGACGATGTAAAGACGCAGGAGTCGTTTAGGGGATTAATAAA
GGGAGAGGAGGACTCGGGGCATGTGTATTTGCAGACGGGGGATCAAGGCT
TTCTATGGCATGGTGAATTGTTCATCACTGGACGGATCAAGGATTTGATT
ATTGTGAGGGGGCGGAATTTGTACCCCCAGGATATTGAGTATGCGGTAGA
AGCGGGATTAGATAGCATGTTGCGCCCGGGCTGCTCCGGTTCGTTCTCCC
TGGATTGCAATGGGGAGGAGACTGTTGCGTATGTCGCTGAATTGCGAAAT
AACACAACCGATCATACGTTGCTCCAGGGGACGGTGGATCAGATTCGGAG
ATTAATCGCCGAGGAGTTCCAGGTGGCTGTCTCGGTGGTGGTGCTTGTCG
AACCTCGTTCCATCCCCAAAACTACCTCCGGGAAGATTCAACGGCATAAG
TGTAAATTGGGCTACCGCGATGGTTCCCTCAAGACGGCATTCCTGTGGGA
GGCCGAGCCGAGTTCGAAGACGATTTCTCTTCGCCTGAGACCAATTACCA
ACGTAGCCCGATGAATGTCGGCGACGACGAACGGCAAGGGCTCGGCCGCG
CCTCCCGGCGCGCGGTGGAACAAGGGCCGCGGCTGGGATGGCATTGGCAA
CTGGTGCGACGACGCCACAGCCGAAGAGATTTGTTTGGCCGTGGACAAGC
TCTCGGCGGAGGATAAGCGGTTGACGGTCGTTAAGGCAATCAAGTTCTTG
TTGTCCTCCTACGCGGAGAAGCGAGCGTTGACGTATTTAGATGGAAAGGG
GCAAGAAATCGAGGTGCAGACGTTTTCGGACGTGATGGACTGCGCTGATC
GCATTGCAGCCTACTTGCAGCGGGAGATGGGCTTGCGTCCTGGTGACCGG
GCCGTCCTACTCTACCCGCCTGGTCAAGAGTTTATCTTGGCCTTTTTGGG
GTGCATTGTGGCTGGCGTGGTGGCCGTGCCTGTGTACCCTCCCCACCCCT
ACCGGATGGAGACAGACCTTCCTCGGTTAAATATGATTGTGAATAACTCC
GGCTGCAAAGTAGCTCTGACAGACTCTCAGTACATGTTGGTCATCCGCGG
CATAGCCGTCAAGAACATGCTCTCCCGCGTCGGCCTCGCCAAGGGCGCCA
CCTGGCCCAACCTCCGCAACGTACAAACAGACAAGATCCGCAAGTCATAC
GCACATACAGAGCTCCTCGTTGAACCCGACCCTGACCCAGATGACCTTGC
ATTTCTGCAGTACACCTCCGGCTCCACCTCCTTCCCGAAGGGTGTGATGG
TGACCCATGCAAACCTTATTGCACAGGTCCGCCTCCTCTCCCTCCGTTCC
GTCGGCATCTTCGGATACACCAACCAGCTGAACGTCGTCTCGTGGCTTCC
GCAATACCACGACATGGGTTTGATCGGGATCTTCCTGGAGTGCCTCTCCA
CTGGGACCCACCTCATCTATATGACTCCCATCTCCTTCCTCCAAGATCCG
ACCATGTGGCTTTACACTCTCCACCGCTACCGTGCCGCTGTCACCTGTGC
ACCGAATTTTGCCTTTGCCCTCGCCCAGCGCAAGACTTCGGAGGCCCTTC
GTGATAGTATGGACTTGTCGTGCATTCAGTGCGTGATTTGCGGGGCCGAG
CCGATCAGGGTTGAGGTGATGCAATCTTTCTTCGCGTTTTTTGCCAAGAG
TAAATTTGATCCTAAGGTCCTCATGCCTGCTTATGGTCTGGCGGAGTTCA
CCTTGTGTGCGACTTCCCAGCCATCGGGGAGGGTGTTGAACGTGCTGTAT
GTGGATCAGCAGGTGTTGGGGTCGACGGGAAAGGTTGTGTTGGTACCTGA
GGACACGCCGGGGGCTGCATGCTATGTGGGGGTGGGAGGACCTTATAAGG
AGGATGGGACGCAGTGTCGAATCGTAAATCCAGACACGAGGGTTTGTCAG
GGGCAGGGGCATATTGGGGAGATTTGGCTGGATGGCCCGAGTAAGACGAA
AGGTTACTTTGATGACGATGTAAAGACGCAGGAGTCGTTTAGGGGATTAA
TAAAGGGAGAGGAGGACTCGGGGCATGTGTATTTGCAGACGGGGGATCAA
GGCTTTCTATGGCATGGTGAATTGTTCATCACTGGACGGATCAAGGATTT
GATTATTGTGAGGGGGCGGAATTTGTACCCCCAGGATATTGAGTATGCGG
TAGAAGCGGGATTAGATAGCATGTTGCGCCCGGGCTGCTCCGGTTCGTTC
TCCCTGGATTGCAATGGGGAGGAGACTGTTGCGTATGTCGCTGAATTGCG
AAATAACACAACCGATCATACGTTGCTCCAGGGGACGGTGGATCAGATTC
GGAGATTAATCGCCGAGGAGTTCCAGGTGGCTGTCTCGGTGGTGGTGCTT
GTCGAACCTCGTTCCATCCCCAAAACTACCTCCGGGAAGATTCAACGGCA
TAAGTGTAAATTGGGCTACCGCGATGGTTCCCTCAAGACGGCATTCCTGT
GGGAGGCC back to top
|