jgi.p|Nanoce1779_2|591597, mRNA_5165 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591597
Unique Name	mRNA_5165
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	4172
Alignment location	scaffold_12:619582..623753 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591683
Track	FilteredModels2
ProteinId	591597

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:619582..623753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591597	gene_5165	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591597	mRNA_5165-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5165	CDS_5165	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:619582..623753-
coding sequence from alignment at scaffold_12:619582..623753-

mRNA sequence

>mRNA_5165 ID=mRNA_5165|Name=jgi.p|Nanoce1779_2|591597|organism=Nannochloropsis oceanica|type=mRNA|length=4172bp
CCCCGTGATCTTTGCGCTTTTTTCCACTGTTGGCGTGGTGCCCATGATTG
CCTTCCCCACCCTCTTTGCGTCCATGGCCTCCCTGACGGCCCAGGCAGCC
CTGCTCCCCGATGCTGTACTTCTTTACACAGCACGTCAGGCTGGCTTGGC
GGACATTACAGCCGACGCTATTCGTGGTTTGTTCAAAACCCAGGAAGGGG
TGGATCTAATCAAGCCGGCGTTGCCAGCGGGCATGACGTTGGAGGGTACG
CCGGGGACTGACTCCCTTGTATTCGTGACCACGGGCGCACAAGCTGTGAG
GGAAGTGATGCTTGATGCCTTTGGTCTACCAGCAGCGACGATGTATGGTG
TGTTTGGGGTCGTCTGGACCTTTGCCCTGGGCTTTATGATTCAGGGTTTT
ATCTTGACGTTCTTGACCAACCTGGTGTACTATATCTTGTTGGCCCCGCC
TGTTCGCAGCAATGCCTATCGGGTCCGAGGGTATAAGGCACATTTGCGTC
AGGTTAGGATTTCGGTGATGCGGTGGGCGTATGATCGCTTCATGCGTTTG
TTTGTGGGCACGGATTTCTTGCCGACGTGGTATTGGACGCTGGGGGCGAG
GGTGGGGAAGAGTGTGGTGATTGCTAACACGGACGTGTTTGAGGACCCGC
ATTTGATTTCCTTGGGGAATCAAAGCACGATCACAGACTACGCGGCCTTG
GAAACAGTTAATGAGCCCGGGAATGGGTATGCGGTTTGTGAACGGGTCAA
GGTGGGGAAGGACTGCGTGGTGGGCGTGCGAGGAGTGGTTGCCTCTGGGA
CGGAGATGTCGGATGGGTCGATAGTCATGCCTCAGTCTGTGGTGGCTGGG
GGGGTGGTGGCAGCTGATGCCGTGATGATGGGTGTGCCTGCCGTCAAGAT
TTTGGAACGGTCTTCCTTGCCAGGCAATGCGCCGGTGGAGGGGCACGGAA
GAAGCTTGGGTGGGTGTTTGAGGTGGGGATTGGGGTCGTGTGGGCACGAG
TGGTTGGTGATGCGGGGCGTTCAGGGGCTGCTGGCACCGTTGCTATCGTG
TGGCTTGACGCTTTTATTGGTCTTGGTGGCGGCATACCCCACGGTACTTT
TCTATCTGTGGGCCATGGCGGATAAAACTGCGAATGGCGCGGGCTGGTCC
GTGTTGCTCGCGCAGGTGGCCACGCCAATTGCCTTCCTCATTTTCTGGGT
GTCAATTTTGGTGGTGGTCGTCGTAGAGAAGTGGGCGTTGCGCTGGCGAC
AGAAGGAGGGTATGACGGTGCCTGTTCGGGGCCCGTCGTACCACGCGCGG
ATTCAGACGTTGGTGTTACAGAATTATGCTGGGACTGCAGCGCTGGAGAC
ATTGAGGGGGTCGGTGTTGGCGCCCTGGTATTTGAGATTACTGGGAGCGA
AGGTGGATGGGAGCGCGTATGTGAATACGTTGGTGATCACGGAGCCGGAC
TTGGTGACAGTGGGGAAGCAGGCTGTCTTGGACACGGATGCGGTGTTGAT
GCCGAACGCGTTGGAAGGAAGGAGTCTGGTGCTTGGGCCAATTATTGTGG
AGGACCGTGCTAGGGTTGGCTCGGCATCACTGATGCTGAGAAATTGTAGT
GTCAAGCGCGGGGCGGAGTTGGCGGAGACGGCTGTGTTGCCCCCGACGCT
ATCATTGCGGGTAAAGGGGGTGAGATATGGGGCTTTTGTCCTAGAAGACC
CGCCCAACGATGACGAGGCAGTTTAAAATATTTAGGAGAGGGAGAGCGAG
AGAGAGAGAAGACAGAAGAGTATATGACGTGCGCTATAATATTCGTCTAG
TATTTGGTTGGGAGAGGAGGCATAATCGAGGGGACAGGAAGTGTTGTGTG
TTTTTGGTGGACTGTCACTATACGTTGATATGCACCGTCGAGAAACACAG
ACCTCTTCACTATTATTATTTAATAATAACATCAGCTTTACCAATCGACT
GTATCAGACTAGCAGCAGCCAAGTTTCAATTCAAAACGACCAAATGATGT
GTGTGATGCGTAGATTGTAGCAATTAAGGAGGAATAACGAGGAAGGTGCG
GTAGATGAGAAAGGGGGAATGGAGTCGGTCACCAGGCAACCAGTGGGATG
GGCGGTCTGATTGATTTCTTTCACTTCCTTCTTTTCTGTGTCATCTTCAA
TAAAAAGAAAGCGAAATGTGGGAAGCGTGTGTCAACAAGCTAAATTCGAG
AGCTTTGTCTGTAGGTGTGTATCTTCTTTCTCTCACTTGGATTTGGCGGA
CGGGTGTGGGTGGGTTTGGGAGAAGGAGAAAAGAGAGTCAAAGTAGAGAC
AAAGAAGGGAAAAAGCATCACACCATAAATATGTGTTTTAGATAAACGAT
TAAAACAAGGACAAAAAAAGAGACAGGAAGCAAACTACAGCCCCAGCTCG
CATACCTTTCAGGTGTGGTAACGAGAAAATGGGGCGGCAAGCTGCCACCA
AAAAAAGAAACGGAAAAGAAATAGAAGCGCATGCACACAAAAGGAACAAC
ATTATGATTACTGCGGTAAGAGTTTCCTTCATTCTACTTTTCTCTCGTCG
CCTTCCCCGTTGTACACGTCAGACAGGCTGGCGATGCATTCCCTTGGTAC
GGGCGGGGCGGGGCGACTTACAAAAGGCGATGCTGGTAATGGCATTCATT
TTCAATCGTCAAGATTCAGATGCTACAAATTTACGATATTGGTACACAGA
CAAAAAATTTGGTCTCGCGACTCGCTGTATGAATGTCTCCTCGCTAATCG
CCGCCACGGTAGGAACGTATGTGACGGGGGGGGCAACGCCAGCATAACAG
CTTACGATGAGGATATTGAAAATGCTCGTACAAGAAAATGCTCGTACAAG
AGTTTTCCACCATACCGGTCGATGACTACCACAAACGCTTGTTGTTGAGT
GTCAAGGGTGCTCGTTCCTCAACCTGGCTTTCGTTTACGACCACTTTGTG
GCGCTCCTGCGAAGTGTGAAACTGTGGGGCCTGCTTTACTTTCGTCAATT
GCAAGAAGACAAAGGACGGAATACCGCCGGTTACTTATTCTCGATCCTAA
TTTCCCTGTTGATTGCGTCAACAATCGCGGTCTGCTTGACCTTCCCATAG
GATGCTGCCATTTTGATCCGTGAGTACTACGCGGGCGCAAATATTCCAGG
GGAGTATTTCCTGGATCGGACCCTGGCTGGCATCCCATTTCCATAGCCTT
ACTCATTATCGGGATCATTCCTTACTTCATGGTAGGGCTCGCATCAGAGG
CCAGGGCGTTTGGCAGGTTTTGCCTCATCTTTTTCGTCGTGAATTTCGCT
GCTCAGTCTCTCGGGTACCTGGCGTCATCCTTCTCCGCGAATCCGCTGGT
GGGTCTTTCGATTCCTACTTTGCTCACTTCTCCCATGATCTTTCTTCCCG
ACATGATTTATGAGCGACATTCTGTTCCGGAGAACTTGAGGTGGATTCAA
GATCTGTCCATCGTGAACAGCGGCTTTGCTCTGTTGGTGATTAATCAGGT
TGAGCAAGTCAATCCCCAAACTCGAAATTTCTGCCGAATTTATTACAAGT
CAGCTAGTCGGAATATTCCCATTTTATGGTTAACCTTGTTATATTCTCGT
TTTTTAACGTCTAGCGGCAATGGCGATATTGTATGTACGTGTCATGTACT
TAGCCGAGGCAAAGAAAGACAGGGAAAGGGGTAGGGAAAATGGATCAAGG
ACAAATGGAAGTTGAGGGGTTATAGAAGGGCTCTGTGCTGAATAGACTCA
GTACCAAGGAGATGTTGATGAAATGAAAGTCATGATCGAACCAATCTTCA
CTGACTAGGAATTTGTAGATTGTGTGCGGGTTGTAAATGACGAATTATAT
AAAATGCCCTGAAAAGTTGAAAGAGACAGGTCATTTTTGCACAAAAGGGT
GTCGACTCGTGTTTGATGTGCACTAATGATATTGGATTTATTTGTATTTG
CTTATTTGCTTATGCTTATGCTATTATGCTGTGCCTGCCATGCCGTCAGC
AGACCCCATGTTGGAGCAGGACAATTGGTGCGGCCGATGACCCTCGAGGC
GGACAAAGCAGGTTTTAACCTCAGCTTTTAATCCGCTTGGTTGTCCGTCT
TACGTCGCTGAATAAGTACAACGTGTAAATTTATGCAGGAAAGCTTGAAA
ATCACTGATACTTAGATCTCGT

protein sequence of jgi.p|Nanoce1779_2|591597

>mRNA_5165-protein ID=mRNA_5165-protein|Name=jgi.p|Nanoce1779_2|591597|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MVGLASEARAFGRFCLIFFVVNFAAQSLGYLASSFSANPLVGLSIPTLLT
SPMIFLPDMIYERHSVPENLRWIQDLSIVNSGFALLVINQVEQVNPQTRN
FCRIYYKSASRNIPILWLTLLYSRFLTSSGNGDIVCTCHVLSRGKERQGK
G*

mRNA from alignment at scaffold_12:619582..623753-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5165 ID=mRNA_5165|Name=jgi.p|Nanoce1779_2|591597|organism=Nannochloropsis oceanica|type=mRNA|length=4172bp|location=Sequence derived from alignment at scaffold_12:619582..623753- (Nannochloropsis oceanica)
CCCCGTGATCTTTGCGCTTTTTTCCACTGTTGGCGTGGTGCCCATGATTG
CCTTCCCCACCCTCTTTGCGTCCATGGCCTCCCTGACGGCCCAGGCAGCC
CTGCTCCCCGATGCTGTACTTCTTTACACAGCACGTCAGGCTGGCTTGGC
GGACATTACAGCCGACGCTATTCGTGGTTTGTTCAAAACCCAGGAAGGGG
TGGATCTAATCAAGCCGGCGTTGCCAGCGGGCATGACGTTGGAGGGTACG
CCGGGGACTGACTCCCTTGTATTCGTGACCACGGGCGCACAAGCTGTGAG
GGAAGTGATGCTTGATGCCTTTGGTCTACCAGCAGCGACGATGTATGGTG
TGTTTGGGGTCGTCTGGACCTTTGCCCTGGGCTTTATGATTCAGGGTTTT
ATCTTGACGTTCTTGACCAACCTGGTGTACTATATCTTGTTGGCCCCGCC
TGTTCGCAGCAATGCCTATCGGGTCCGAGGGTATAAGGCACATTTGCGTC
AGGTTAGGATTTCGGTGATGCGGTGGGCGTATGATCGCTTCATGCGTTTG
TTTGTGGGCACGGATTTCTTGCCGACGTGGTATTGGACGCTGGGGGCGAG
GGTGGGGAAGAGTGTGGTGATTGCTAACACGGACGTGTTTGAGGACCCGC
ATTTGATTTCCTTGGGGAATCAAAGCACGATCACAGACTACGCGGCCTTG
GAAACAGTTAATGAGCCCGGGAATGGGTATGCGGTTTGTGAACGGGTCAA
GGTGGGGAAGGACTGCGTGGTGGGCGTGCGAGGAGTGGTTGCCTCTGGGA
CGGAGATGTCGGATGGGTCGATAGTCATGCCTCAGTCTGTGGTGGCTGGG
GGGGTGGTGGCAGCTGATGCCGTGATGATGGGTGTGCCTGCCGTCAAGAT
TTTGGAACGGTCTTCCTTGCCAGGCAATGCGCCGGTGGAGGGGCACGGAA
GAAGCTTGGGTGGGTGTTTGAGGTGGGGATTGGGGTCGTGTGGGCACGAG
TGGTTGGTGATGCGGGGCGTTCAGGGGCTGCTGGCACCGTTGCTATCGTG
TGGCTTGACGCTTTTATTGGTCTTGGTGGCGGCATACCCCACGGTACTTT
TCTATCTGTGGGCCATGGCGGATAAAACTGCGAATGGCGCGGGCTGGTCC
GTGTTGCTCGCGCAGGTGGCCACGCCAATTGCCTTCCTCATTTTCTGGGT
GTCAATTTTGGTGGTGGTCGTCGTAGAGAAGTGGGCGTTGCGCTGGCGAC
AGAAGGAGGGTATGACGGTGCCTGTTCGGGGCCCGTCGTACCACGCGCGG
ATTCAGACGTTGGTGTTACAGAATTATGCTGGGACTGCAGCGCTGGAGAC
ATTGAGGGGGTCGGTGTTGGCGCCCTGGTATTTGAGATTACTGGGAGCGA
AGGTGGATGGGAGCGCGTATGTGAATACGTTGGTGATCACGGAGCCGGAC
TTGGTGACAGTGGGGAAGCAGGCTGTCTTGGACACGGATGCGGTGTTGAT
GCCGAACGCGTTGGAAGGAAGGAGTCTGGTGCTTGGGCCAATTATTGTGG
AGGACCGTGCTAGGGTTGGCTCGGCATCACTGATGCTGAGAAATTGTAGT
GTCAAGCGCGGGGCGGAGTTGGCGGAGACGGCTGTGTTGCCCCCGACGCT
ATCATTGCGGGTAAAGGGGGTGAGATATGGGGCTTTTGTCCTAGAAGACC
CGCCCAACGATGACGAGGCAGTTTAAAATATTTAGGAGAGGGAGAGCGAG
AGAGAGAGAAGACAGAAGAGTATATGACGTGCGCTATAATATTCGTCTAG
TATTTGGTTGGGAGAGGAGGCATAATCGAGGGGACAGGAAGTGTTGTGTG
TTTTTGGTGGACTGTCACTATACGTTGATATGCACCGTCGAGAAACACAG
ACCTCTTCACTATTATTATTTAATAATAACATCAGCTTTACCAATCGACT
GTATCAGACTAGCAGCAGCCAAGTTTCAATTCAAAACGACCAAATGATGT
GTGTGATGCGTAGATTGTAGCAATTAAGGAGGAATAACGAGGAAGGTGCG
GTAGATGAGAAAGGGGGAATGGAGTCGGTCACCAGGCAACCAGTGGGATG
GGCGGTCTGATTGATTTCTTTCACTTCCTTCTTTTCTGTGTCATCTTCAA
TAAAAAGAAAGCGAAATGTGGGAAGCGTGTGTCAACAAGCTAAATTCGAG
AGCTTTGTCTGTAGGTGTGTATCTTCTTTCTCTCACTTGGATTTGGCGGA
CGGGTGTGGGTGGGTTTGGGAGAAGGAGAAAAGAGAGTCAAAGTAGAGAC
AAAGAAGGGAAAAAGCATCACACCATAAATATGTGTTTTAGATAAACGAT
TAAAACAAGGACAAAAAAAGAGACAGGAAGCAAACTACAGCCCCAGCTCG
CATACCTTTCAGGTGTGGTAACGAGAAAATGGGGCGGCAAGCTGCCACCA
AAAAAAGAAACGGAAAAGAAATAGAAGCGCATGCACACAAAAGGAACAAC
ATTATGATTACTGCGGTAAGAGTTTCCTTCATTCTACTTTTCTCTCGTCG
CCTTCCCCGTTGTACACGTCAGACAGGCTGGCGATGCATTCCCTTGGTAC
GGGCGGGGCGGGGCGACTTACAAAAGGCGATGCTGGTAATGGCATTCATT
TTCAATCGTCAAGATTCAGATGCTACAAATTTACGATATTGGTACACAGA
CAAAAAATTTGGTCTCGCGACTCGCTGTATGAATGTCTCCTCGCTAATCG
CCGCCACGGTAGGAACGTATGTGACGGGGGGGGCAACGCCAGCATAACAG
CTTACGATGAGGATATTGAAAATGCTCGTACAAGAAAATGCTCGTACAAG
AGTTTTCCACCATACCGGTCGATGACTACCACAAACGCTTGTTGTTGAGT
GTCAAGGGTGCTCGTTCCTCAACCTGGCTTTCGTTTACGACCACTTTGTG
GCGCTCCTGCGAAGTGTGAAACTGTGGGGCCTGCTTTACTTTCGTCAATT
GCAAGAAGACAAAGGACGGAATACCGCCGGTTACTTATTCTCGATCCTAA
TTTCCCTGTTGATTGCGTCAACAATCGCGGTCTGCTTGACCTTCCCATAG
GATGCTGCCATTTTGATCCGTGAGTACTACGCGGGCGCAAATATTCCAGG
GGAGTATTTCCTGGATCGGACCCTGGCTGGCATCCCATTTCCATAGCCTT
ACTCATTATCGGGATCATTCCTTACTTCATGGTAGGGCTCGCATCAGAGG
CCAGGGCGTTTGGCAGGTTTTGCCTCATCTTTTTCGTCGTGAATTTCGCT
GCTCAGTCTCTCGGGTACCTGGCGTCATCCTTCTCCGCGAATCCGCTGGT
GGGTCTTTCGATTCCTACTTTGCTCACTTCTCCCATGATCTTTCTTCCCG
ACATGATTTATGAGCGACATTCTGTTCCGGAGAACTTGAGGTGGATTCAA
GATCTGTCCATCGTGAACAGCGGCTTTGCTCTGTTGGTGATTAATCAGGT
TGAGCAAGTCAATCCCCAAACTCGAAATTTCTGCCGAATTTATTACAAGT
CAGCTAGTCGGAATATTCCCATTTTATGGTTAACCTTGTTATATTCTCGT
TTTTTAACGTCTAGCGGCAATGGCGATATTGTATGTACGTGTCATGTACT
TAGCCGAGGCAAAGAAAGACAGGGAAAGGGGTAGGGAAAATGGATCAAGG
ACAAATGGAAGTTGAGGGGTTATAGAAGGGCTCTGTGCTGAATAGACTCA
GTACCAAGGAGATGTTGATGAAATGAAAGTCATGATCGAACCAATCTTCA
CTGACTAGGAATTTGTAGATTGTGTGCGGGTTGTAAATGACGAATTATAT
AAAATGCCCTGAAAAGTTGAAAGAGACAGGTCATTTTTGCACAAAAGGGT
GTCGACTCGTGTTTGATGTGCACTAATGATATTGGATTTATTTGTATTTG
CTTATTTGCTTATGCTTATGCTATTATGCTGTGCCTGCCATGCCGTCAGC
AGACCCCATGTTGGAGCAGGACAATTGGTGCGGCCGATGACCCTCGAGGC
GGACAAAGCAGGTTTTAACCTCAGCTTTTAATCCGCTTGGTTGTCCGTCT
TACGTCGCTGAATAAGTACAACGTGTAAATTTATGCAGGAAAGCTTGAAA
ATCACTGATACTTAGATCTCGT

Coding sequence (CDS) from alignment at scaffold_12:619582..623753-

>mRNA_5165 ID=mRNA_5165|Name=jgi.p|Nanoce1779_2|591597|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_12:619582..623753- (Nannochloropsis oceanica)
ATGGTAGGGCTCGCATCAGAGGCCAGGGCGTTTGGCAGGTTTTGCCTCAT
CTTTTTCGTCGTGAATTTCGCTGCTCAGTCTCTCGGGTACCTGGCGTCAT
CCTTCTCCGCGAATCCGCTGGTGGGTCTTTCGATTCCTACTTTGCTCACT
TCTCCCATGATCTTTCTTCCCGACATGATTTATGAGCGACATTCTGTTCC
GGAGAACTTGAGGTGGATTCAAGATCTGTCCATCGTGAACAGCGGCTTTG
CTCTGTTGGTGATTAATCAGGTTGAGCAAGTCAATCCCCAAACTCGAAAT
TTCTGCCGAATTTATTACAAGTCAGCTAGTCGGAATATTCCCATTTTATG
GTTAACCTTGTTATATTCTCGTTTTTTAACGTCTAGCGGCAATGGCGATA
TTGTATGTACGTGTCATGTACTTAGCCGAGGCAAAGAAAGACAGGGAAAG
GGGTAG

Synonyms

Publications