Properties
| Property Name | Value |
|---|
| TranscriptId | 529175 |
| Track | FilteredModels2 |
| ProteinId | 529089 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:616547..618813 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5164 ID=mRNA_5164|Name=jgi.p|Nanoce1779_2|529089|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGGAGTGGAACGTGGCCGAGTACAAGGTCAAGCTGCGCAAGGGCGGCAA
AAAAACTATTTTGCAGAATGTTGTAGGGCGAGCCGAAGCTGGATTTTTTA
GCGCTATACTGGGCCCCAGTGGATGCGGCAAGACGAGCCTGCTGGACTGC
GTGGCCTTGCGTAACTCAAGCTTCACGGGTGCGCTTCGATTGGATGGACA
ACCGTTGACGAGCAAGTATTTCCTCCACACCGGATACGTACATCAGAAGG
AGCTATTATTCTCTCATTTGACTGTACGAGAACACCTGACCTTCCACTCC
GTGACACGTCTTAGCCGAGGACGTACAACGGAGGAGTGTTTGGGGCGCGT
GGAGGCCGTGCTGCAAGAGGTGGACATGGTGAAGGTCGGCGACTCGCAGA
TTGGCGGCGGAGAACTGTACGTGACCAAAGGTCTGTCGGGTGGGGAGCGG
AAGCGGCTGAATATTGCTACGGAACTGCTGGCGGATCCGTCGATCTTGTT
GTTGGATGAACCTACGAGTGGTCTTGATTCGGTGATGGGAGAGCTGATCT
GCCTCTTACTGCACGACCTAGCCAGGCGTGACCCAAAGCGCATCGTCCTT
GTCGCTGTCCACAGCCCCTCCTCGCGTATCTTTTCCCTCTTCTCCCACCT
GACCATCCTATCCAGCAACGGCGAGCTGGCTTATTTTGGATTACGCCAGC
GTATACTCTCCTTCCTTGAAGGACTAGGGTATGCGTGCCCCAAACTCTTC
AACCCCGCAGACTTCGTGTTGGAGTTAGCATCGACAAAGACAATCCAAAA
CCATATCAGTGACCCGATGGCTGCGGGCGAACGAGAAAGTCGGGAGAAGA
TTGGATTGACAGTGCGGGCAGCGATGACCGTGACTTTAGGTCTGTTGTTT
GGCCTACTTTATCTCTACCAAATCCCCAAGGACAAGGGCCGTAATACTGC
TGGTTTCCTCTTCTCCTTGCTGGTGACCATGTTAATCGCCTCCTCCGTGA
ATGTGTGCCTCTATTTCCCCTTTGAATTTGCCATCCTCATGCGCGAATAC
TACGCTGGGGGTAACCTTCCAATTCCTTACTTCCTCGGCCGTACCCTCGC
CTCGGTGCCCCAATCCATGCTCTTCCTTCTCATGGGCATTATCCCCTATT
TCATGGCAGGCCTCGCTCCCACTGTCTCAACCTTTGGCTACTTCGTCTTA
ATCCTTTTCCTTTCCATTTTCTCGGCACAATCTTTAGGGTATCTGGCGTC
TTCTTTCACCTCGAATCCCGTAGTGAGCCTCTCCATTCTTCCCTTGTTCA
TAACACCCATGATCCTTTTTTCCGGAATGCTGTACGAGCGCCACTCTGTC
CCCGCAGGCCTGCAGTGGATCCAAGAGATTTCCGTGATAAACTATTCGTT
TGGTTTATTGGTTTTAAACCAAGTGGAGGCGGTAGGGGGACAGGTGCGGG
TGTTTTTGCACCAGTTCTTGCAGGTTGAGCAGAAGGACTTTTCCATATTT
TTGGTAAATTTGATTGTGCTGGCATTGGGGTATCGGCTATCGGCGATGAT
TATTTTAATGATTCGGGTGCGATTCATAAGTAAACCCCAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|529089 >mRNA_5164-protein ID=mRNA_5164-protein|Name=jgi.p|Nanoce1779_2|529089|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MEWNVAEYKVKLRKGGKKTILQNVVGRAEAGFFSAILGPSGCGKTSLLDC
VALRNSSFTGALRLDGQPLTSKYFLHTGYVHQKELLFSHLTVREHLTFHS
VTRLSRGRTTEECLGRVEAVLQEVDMVKVGDSQIGGGELYVTKGLSGGER
KRLNIATELLADPSILLLDEPTSGLDSVMGELICLLLHDLARRDPKRIVL
VAVHSPSSRIFSLFSHLTILSSNGELAYFGLRQRILSFLEGLGYACPKLF
NPADFVLELASTKTIQNHISDPMAAGERESREKIGLTVRAAMTVTLGLLF
GLLYLYQIPKDKGRNTAGFLFSLLVTMLIASSVNVCLYFPFEFAILMREY
YAGGNLPIPYFLGRTLASVPQSMLFLLMGIIPYFMAGLAPTVSTFGYFVL
ILFLSIFSAQSLGYLASSFTSNPVVSLSILPLFITPMILFSGMLYERHSV
PAGLQWIQEISVINYSFGLLVLNQVEAVGGQVRVFLHQFLQVEQKDFSIF
LVNLIVLALGYRLSAMIILMIRVRFISKPQ* back to topmRNA from alignment at scaffold_12:616547..618813- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5164 ID=mRNA_5164|Name=jgi.p|Nanoce1779_2|529089|organism=Nannochloropsis oceanica|type=mRNA|length=2267bp|location=Sequence derived from alignment at scaffold_12:616547..618813- (Nannochloropsis oceanica)
ATGGAGTGGAACGTGGCCGAGTACAAGGTCAAGCTGCGCAAGGGCGGCAA
AAAAACTATTTTGCAGAATGTTGTAGGGCGAGCCGAAGCTGGATTTTTTA
GCGCTATACTGGGCCCCAGTGGATGCGGCAAGACGAGCCTGCTGGACTGC
GTGGCCTTGCGTAACTCAAGCTTCACGGGTGCGCTTCGATTGGATGGACA
ACCGTTGACGAGCAAGTATTTCCTCCACACCGGATACGTACATCAGAAGG
AGCTATTATTCTCTCATTTGACTGTACGAGAACACCTGACCTTCCACTCC
GTGACACGTCTTAGCCGAGGACGTACAACGGAGGAGTGTTTGGGGCGCGT
GGAGGCCGTGCTGCAAGAGGTGGACATGGTGAAGGTCGGCGACTCGCAGA
TTGGCGGCGGAGAACTGTACGTGACCAAAGGTCTGTCGGGTGGGGAGCGG
AAGCGGCTGAATATTGCTACGGAACTGCTGGCGGATCCGTCGATCTTGTT
GTTGGATGAACCTACGAGTGGTAAGAAGGGGAGAAAAAAAGGAATAGAGA
GGAAGAGAAAGAGAGAGTGTTTTGTTGTCATTTATGTTCCGGATGCTTGT
GCTTGCTTGTATCTTTCTGTTGTGCTGCTGGAAAGTATAAAGCTTTGATT
TGTTTTCCACATATCTAAAAATTGCGCCGACCTCAACTTATCTTACCTGT
GTCTACCATTCCATTCCTTTCTCCCCCCTTTTCTCCCTCATTGCCTGCAG
GTCTTGATTCGGTGATGGGAGAGCTGATCTGCCTCTTACTGCACGACCTA
GCCAGGCGTGACCCAAAGCGCATCGTCCTTGTCGCTGTCCACAGCCCCTC
CTCGCGTATCTTTTCCCTCTTCTCCCACCTGACCATCCTATCCAGCAACG
GCGAGCTGGCTTATTTTGGATTACGCCAGCGTATACTCTCCTTCCTTGAA
GGACTAGGGTATGCGTGCCCCAAACTCTTCAACCCCGCAGACTTCGTGTT
GGAGTTAGCATCGACAAAGACAATCCAAAACCATATCAGTGACCCGATGG
CTGCGGGCGAACGAGTGGAATGCTTGGCCCCACAGGAGGTTTTGTCGAAG
AACTTGGACTTAGAGGAGGGAAGTGGATTGAGCGCAGGGAGGCAAGATAA
AGGTGATAGTGTAGAGATTGACAATCGCAATTATTCAAACAATAATAAAA
ATGATGCACCGTTTATCGAGAGTGGCAGTATAAGTAATGTAAGCGAAGAG
AGCGGATCCAGCGAGATCAGGGCAGGAAGCGCGGTGAGCAGCGGCGGTAC
CATGGGTCCAAGCGTAGGAGTACACATGTACCTGCGGATGTCAAATTCGA
GCCCGAGGCTGGTGGCGGCTACCAAGGCATCTGTGGTGGATGATTTCCAG
GCTCGTTTGGGCGAGGACCAGCGGCATCAGAAGGTGCATGGTGTTAAAGG
TGCACGATCGTCGCAGTGGGCGCTGTTCAAGATTAATTTGTGGCGGGCAT
GGATTCAGGAAAGTCGGGAGAAGATTGGATTGACAGTGCGGGCAGCGATG
ACCGTGACTTTAGGTCTGTTGTTTGGCCTACTTTATCTCTACCAAATCCC
CAAGGACAAGGGCCGTAATACTGCTGGTTTCCTCTTCTCCTTGCTGGTGA
CCATGTTAATCGCCTCCTCCGTGAATGTGTGCCTCTATTTCCCCTTTGAA
TTTGCCATCCTCATGCGCGAATACTACGCTGGGGGTAACCTTCCAATTCC
TTACTTCCTCGGCCGTACCCTCGCCTCGGTGCCCCAATCCATGCTCTTCC
TTCTCATGGGCATTATCCCCTATTTCATGGCAGGCCTCGCTCCCACTGTC
TCAACCTTTGGCTACTTCGTCTTAATCCTTTTCCTTTCCATTTTCTCGGC
ACAATCTTTAGGGTATCTGGCGTCTTCTTTCACCTCGAATCCCGTAGTGA
GCCTCTCCATTCTTCCCTTGTTCATAACACCCATGATCCTTTTTTCCGGA
ATGCTGTACGAGCGCCACTCTGTCCCCGCAGGCCTGCAGTGGATCCAAGA
GATTTCCGTGATAAACTATTCGTTTGGTTTATTGGTTTTAAACCAAGTGG
AGGCGGTAGGGGGACAGGTGCGGGTGTTTTTGCACCAGTTCTTGCAGGTT
GAGCAGAAGGACTTTTCCATATTTTTGGTAAATTTGATTGTGCTGGCATT
GGGGTATCGGCTATCGGCGATGATTATTTTAATGATTCGGGTGCGATTCA
TAAGTAAACCCCAGTGA back to topCoding sequence (CDS) from alignment at scaffold_12:616547..618813- >mRNA_5164 ID=mRNA_5164|Name=jgi.p|Nanoce1779_2|529089|organism=Nannochloropsis oceanica|type=CDS|length=4779bp|location=Sequence derived from alignment at scaffold_12:616547..618813- (Nannochloropsis oceanica)
GAAAGTCGGGAGAAGATTGGATTGACAGTGCGGGCAGCGATGACCGTGAC
TTTAGGTCTGTTGTTTGGCCTACTTTATCTCTACCAAATCCCCAAGGACA
AGGGCCGTAATACTGCTGGTTTCCTCTTCTCCTTGCTGGTGACCATGTTA
ATCGCCTCCTCCGTGAATGTGTGCCTCTATTTCCCCTTTGAATTTGCCAT
CCTCATGCGCGAATACTACGCTGGGGGTAACCTTCCAATTCCTTACTTCC
TCGGCCGTACCCTCGCCTCGGTGCCCCAATCCATGCTCTTCCTTCTCATG
GGCATTATCCCCTATTTCATGGCAGGCCTCGCTCCCACTGTCTCAACCTT
TGGCTACTTCGTCTTAATCCTTTTCCTTTCCATTTTCTCGGCACAATCTT
TAGGGTATCTGGCGTCTTCTTTCACCTCGAATCCCGTAGTGAGCCTCTCC
ATTCTTCCCTTGTTCATAACACCCATGATCCTTTTTTCCGGAATGCTGTA
CGAGCGCCACTCTGTCCCCGCAGGCCTGCAGTGGATCCAAGAGATTTCCG
TGATAAACTATTCGTTTGGTTTATTGGTTTTAAACCAAGTGGAGGCGGTA
GGGGGACAGGTGCGGGTGTTTTTGCACCAGTTCTTGCAGGTTGAGCAGAA
GGACTTTTCCATATTTTTGGTAAATTTGATTGTGCTGGCATTGGGGTATC
GGCTATCGGCGATGATTATTTTAATGATTCGGGTGCGATTCATAAGTAAA
CCCCAGTGAGTCTTGATTCGGTGATGGGAGAGCTGATCTGCCTCTTACTG
CACGACCTAGCCAGGCGTGACCCAAAGCGCATCGTCCTTGTCGCTGTCCA
CAGCCCCTCCTCGCGTATCTTTTCCCTCTTCTCCCACCTGACCATCCTAT
CCAGCAACGGCGAGCTGGCTTATTTTGGATTACGCCAGCGTATACTCTCC
TTCCTTGAAGGACTAGGGTATGCGTGCCCCAAACTCTTCAACCCCGCAGA
CTTCGTGTTGGAGTTAGCATCGACAAAGACAATCCAAAACCATATCAGTG
ACCCGATGGCTGCGGGCGAACGAATGGAGTGGAACGTGGCCGAGTACAAG
GTCAAGCTGCGCAAGGGCGGCAAAAAAACTATTTTGCAGAATGTTGTAGG
GCGAGCCGAAGCTGGATTTTTTAGCGCTATACTGGGCCCCAGTGGATGCG
GCAAGACGAGCCTGCTGGACTGCGTGGCCTTGCGTAACTCAAGCTTCACG
GGTGCGCTTCGATTGGATGGACAACCGTTGACGAGCAAGTATTTCCTCCA
CACCGGATACGTACATCAGAAGGAGCTATTATTCTCTCATTTGACTGTAC
GAGAACACCTGACCTTCCACTCCGTGACACGTCTTAGCCGAGGACGTACA
ACGGAGGAGTGTTTGGGGCGCGTGGAGGCCGTGCTGCAAGAGGTGGACAT
GGTGAAGGTCGGCGACTCGCAGATTGGCGGCGGAGAACTGTACGTGACCA
AAGGTCTGTCGGGTGGGGAGCGGAAGCGGCTGAATATTGCTACGGAACTG
CTGGCGGATCCGTCGATCTTGTTGTTGGATGAACCTACGAGTGGAAAGTC
GGGAGAAGATTGGATTGACAGTGCGGGCAGCGATGACCGTGACTTTAGGT
CTGTTGTTTGGCCTACTTTATCTCTACCAAATCCCCAAGGACAAGGGCCG
TAATACTGCTGGTTTCCTCTTCTCCTTGCTGGTGACCATGTTAATCGCCT
CCTCCGTGAATGTGTGCCTCTATTTCCCCTTTGAATTTGCCATCCTCATG
CGCGAATACTACGCTGGGGGTAACCTTCCAATTCCTTACTTCCTCGGCCG
TACCCTCGCCTCGGTGCCCCAATCCATGCTCTTCCTTCTCATGGGCATTA
TCCCCTATTTCATGGCAGGCCTCGCTCCCACTGTCTCAACCTTTGGCTAC
TTCGTCTTAATCCTTTTCCTTTCCATTTTCTCGGCACAATCTTTAGGGTA
TCTGGCGTCTTCTTTCACCTCGAATCCCGTAGTGAGCCTCTCCATTCTTC
CCTTGTTCATAACACCCATGATCCTTTTTTCCGGAATGCTGTACGAGCGC
CACTCTGTCCCCGCAGGCCTGCAGTGGATCCAAGAGATTTCCGTGATAAA
CTATTCGTTTGGTTTATTGGTTTTAAACCAAGTGGAGGCGGTAGGGGGAC
AGGTGCGGGTGTTTTTGCACCAGTTCTTGCAGGTTGAGCAGAAGGACTTT
TCCATATTTTTGGTAAATTTGATTGTGCTGGCATTGGGGTATCGGCTATC
GGCGATGATTATTTTAATGATTCGGGTGCGATTCATAAGTAAACCCCAGT
GAGTCTTGATTCGGTGATGGGAGAGCTGATCTGCCTCTTACTGCACGACC
TAGCCAGGCGTGACCCAAAGCGCATCGTCCTTGTCGCTGTCCACAGCCCC
TCCTCGCGTATCTTTTCCCTCTTCTCCCACCTGACCATCCTATCCAGCAA
CGGCGAGCTGGCTTATTTTGGATTACGCCAGCGTATACTCTCCTTCCTTG
AAGGACTAGGGTATGCGTGCCCCAAACTCTTCAACCCCGCAGACTTCGTG
TTGGAGTTAGCATCGACAAAGACAATCCAAAACCATATCAGTGACCCGAT
GGCTGCGGGCGAACGAATGGAGTGGAACGTGGCCGAGTACAAGGTCAAGC
TGCGCAAGGGCGGCAAAAAAACTATTTTGCAGAATGTTGTAGGGCGAGCC
GAAGCTGGATTTTTTAGCGCTATACTGGGCCCCAGTGGATGCGGCAAGAC
GAGCCTGCTGGACTGCGTGGCCTTGCGTAACTCAAGCTTCACGGGTGCGC
TTCGATTGGATGGACAACCGTTGACGAGCAAGTATTTCCTCCACACCGGA
TACGTACATCAGAAGGAGCTATTATTCTCTCATTTGACTGTACGAGAACA
CCTGACCTTCCACTCCGTGACACGTCTTAGCCGAGGACGTACAACGGAGG
AGTGTTTGGGGCGCGTGGAGGCCGTGCTGCAAGAGGTGGACATGGTGAAG
GTCGGCGACTCGCAGATTGGCGGCGGAGAACTGTACGTGACCAAAGGTCT
GTCGGGTGGGGAGCGGAAGCGGCTGAATATTGCTACGGAACTGCTGGCGG
ATCCGTCGATCTTGTTGTTGGATGAACCTACGAGTGGAAAGTCGGGAGAA
GATTGGATTGACAGTGCGGGCAGCGATGACCGTGACTTTAGGTCTGTTGT
TTGGCCTACTTTATCTCTACCAAATCCCCAAGGACAAGGGCCGTAATACT
GCTGGTTTCCTCTTCTCCTTGCTGGTGACCATGTTAATCGCCTCCTCCGT
GAATGTGTGCCTCTATTTCCCCTTTGAATTTGCCATCCTCATGCGCGAAT
ACTACGCTGGGGGTAACCTTCCAATTCCTTACTTCCTCGGCCGTACCCTC
GCCTCGGTGCCCCAATCCATGCTCTTCCTTCTCATGGGCATTATCCCCTA
TTTCATGGCAGGCCTCGCTCCCACTGTCTCAACCTTTGGCTACTTCGTCT
TAATCCTTTTCCTTTCCATTTTCTCGGCACAATCTTTAGGGTATCTGGCG
TCTTCTTTCACCTCGAATCCCGTAGTGAGCCTCTCCATTCTTCCCTTGTT
CATAACACCCATGATCCTTTTTTCCGGAATGCTGTACGAGCGCCACTCTG
TCCCCGCAGGCCTGCAGTGGATCCAAGAGATTTCCGTGATAAACTATTCG
TTTGGTTTATTGGTTTTAAACCAAGTGGAGGCGGTAGGGGGACAGGTGCG
GGTGTTTTTGCACCAGTTCTTGCAGGTTGAGCAGAAGGACTTTTCCATAT
TTTTGGTAAATTTGATTGTGCTGGCATTGGGGTATCGGCTATCGGCGATG
ATTATTTTAATGATTCGGGTGCGATTCATAAGTAAACCCCAGTGAGTCTT
GATTCGGTGATGGGAGAGCTGATCTGCCTCTTACTGCACGACCTAGCCAG
GCGTGACCCAAAGCGCATCGTCCTTGTCGCTGTCCACAGCCCCTCCTCGC
GTATCTTTTCCCTCTTCTCCCACCTGACCATCCTATCCAGCAACGGCGAG
CTGGCTTATTTTGGATTACGCCAGCGTATACTCTCCTTCCTTGAAGGACT
AGGGTATGCGTGCCCCAAACTCTTCAACCCCGCAGACTTCGTGTTGGAGT
TAGCATCGACAAAGACAATCCAAAACCATATCAGTGACCCGATGGCTGCG
GGCGAACGAATGGAGTGGAACGTGGCCGAGTACAAGGTCAAGCTGCGCAA
GGGCGGCAAAAAAACTATTTTGCAGAATGTTGTAGGGCGAGCCGAAGCTG
GATTTTTTAGCGCTATACTGGGCCCCAGTGGATGCGGCAAGACGAGCCTG
CTGGACTGCGTGGCCTTGCGTAACTCAAGCTTCACGGGTGCGCTTCGATT
GGATGGACAACCGTTGACGAGCAAGTATTTCCTCCACACCGGATACGTAC
ATCAGAAGGAGCTATTATTCTCTCATTTGACTGTACGAGAACACCTGACC
TTCCACTCCGTGACACGTCTTAGCCGAGGACGTACAACGGAGGAGTGTTT
GGGGCGCGTGGAGGCCGTGCTGCAAGAGGTGGACATGGTGAAGGTCGGCG
ACTCGCAGATTGGCGGCGGAGAACTGTACGTGACCAAAGGTCTGTCGGGT
GGGGAGCGGAAGCGGCTGAATATTGCTACGGAACTGCTGGCGGATCCGTC
GATCTTGTTGTTGGATGAACCTACGAGTG back to top
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