jgi.p|Nanoce1779_2|55382, mRNA_5163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|55382
Unique NamemRNA_5163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1189
Alignment locationscaffold_12:614074..615262 -

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Properties
Property NameValue
TranscriptId55468
TrackFilteredModels2
ProteinId55382
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:614074..615262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|55382gene_5163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|55382mRNA_5163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5163CDS_5163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5163 ID=mRNA_5163|Name=jgi.p|Nanoce1779_2|55382|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp
CACTCACACCCTTTCCCCTACATTCACACGACCACAGACACAGACACTGC
CATCAGCCTTCAAGCAATCACACCAACGCGCAACTCCCTCGCACTTCTTC
CCGGGACCATGTCACGCTCCTACCGGCTCGTGGGAGCCCTTCTTCCCCGT
CTTCCCCTAGCCCGTCTCCTCCTCCTCTTCTTTCTGGTGCACCCAGGATC
CTGCGCCACCTTTGAGAGCCGTCACTATTTAACACAACGTTACCCCAATC
GGGACGTGATTCCTCCCGCCAGCCTCCTCCCCTCCCCCGGCCAACGGCGC
CGCCATGACACCAATCCTGGCTCGCTCCTTTTTGTCCGTCCACCCACTGT
GACAGACCCACAACAAAGCCACAGCCACAAGCACAACAAAAAGGGACAGA
CCATGCCGTCCTCTCCAGTGGCTCGCCGCGTCGTGATTGGCAATTTCGTC
TCTGAGCTGGAGAGCAGCAATTACGACTATCGACGGAACGCGGGGCCTCG
TCCTCGCCTTCCCGGCCAGCAAGTGCAACAACAACATCATGCACATGATC
AGCAACGGCAGCAACAGCAAGTTGTCTCCAAACTTTCTTCCTCCCTCACC
TCCGTCTCAGGCGGTGCTTCCGCAATGCCCTCGGCGTCGGTGGGCAGGCT
CCTTAAAAAGTCCGCCGCTTCCTTCGTTGATGCCTATGACGGCGTCATGA
GCTTTGTGGGAAGCCGAATTGTGACAACCGAGACAAGCTTCAGCAAGGCC
CTGCTTGCAGTCTCCTCCTCCATGGCCACCCCCCTCACATACCTAGAAGG
ACAGAAGATGTCCTCCTTGTCCTCCTCTTCCTCGAGAGGCTTGAGATTGA
CATCTCGAGGAGCGGAAGGACGTATGTCTGCTTCCTCAGTCGGTGGGAAC
TTGGCAAAGGAGATGCTTAGTTCCTCCTTTTCTTCTCCGGCCCTGGTGGG
GTTCATGGATGTGGACCCATTCGAGAAGAGCAAGAAGCATTTCAAGCGCA
ACACCTCGCTGGCCAAGCTCCTTTTGTAAAGGAGGAAGCGAAAAAGATTT
GAAGGTAGCCTGACTTTCTAGACCATCATCCTCCTCCTGTTCTCTCCCAC
TCTTCTCTCTTTCTCAACAAGAGCATCTGCACCTAAAAGATGACTTGAGA
AGACATGATGATGGCTCGTTCCTGTATATTGATAGATAG
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protein sequence of jgi.p|Nanoce1779_2|55382

>mRNA_5163-protein ID=mRNA_5163-protein|Name=jgi.p|Nanoce1779_2|55382|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSRSYRLVGALLPRLPLARLLLLFFLVHPGSCATFESRHYLTQRYPNRDV
IPPASLLPSPGQRRRHDTNPGSLLFVRPPTVTDPQQSHSHKHNKKGQTMP
SSPVARRVVIGNFVSELESSNYDYRRNAGPRPRLPGQQVQQQHHAHDQQR
QQQQVVSKLSSSLTSVSGGASAMPSASVGRLLKKSAASFVDAYDGVMSFV
GSRIVTTETSFSKALLAVSSSMATPLTYLEGQKMSSLSSSSSRGLRLTSR
GAEGRMSASSVGGNLAKEMLSSSFSSPALVGFMDVDPFEKSKKHFKRNTS
LAKLLL*
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mRNA from alignment at scaffold_12:614074..615262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5163 ID=mRNA_5163|Name=jgi.p|Nanoce1779_2|55382|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_12:614074..615262- (Nannochloropsis oceanica)
CACTCACACCCTTTCCCCTACATTCACACGACCACAGACACAGACACTGC
CATCAGCCTTCAAGCAATCACACCAACGCGCAACTCCCTCGCACTTCTTC
CCGGGACCATGTCACGCTCCTACCGGCTCGTGGGAGCCCTTCTTCCCCGT
CTTCCCCTAGCCCGTCTCCTCCTCCTCTTCTTTCTGGTGCACCCAGGATC
CTGCGCCACCTTTGAGAGCCGTCACTATTTAACACAACGTTACCCCAATC
GGGACGTGATTCCTCCCGCCAGCCTCCTCCCCTCCCCCGGCCAACGGCGC
CGCCATGACACCAATCCTGGCTCGCTCCTTTTTGTCCGTCCACCCACTGT
GACAGACCCACAACAAAGCCACAGCCACAAGCACAACAAAAAGGGACAGA
CCATGCCGTCCTCTCCAGTGGCTCGCCGCGTCGTGATTGGCAATTTCGTC
TCTGAGCTGGAGAGCAGCAATTACGACTATCGACGGAACGCGGGGCCTCG
TCCTCGCCTTCCCGGCCAGCAAGTGCAACAACAACATCATGCACATGATC
AGCAACGGCAGCAACAGCAAGTTGTCTCCAAACTTTCTTCCTCCCTCACC
TCCGTCTCAGGCGGTGCTTCCGCAATGCCCTCGGCGTCGGTGGGCAGGCT
CCTTAAAAAGTCCGCCGCTTCCTTCGTTGATGCCTATGACGGCGTCATGA
GCTTTGTGGGAAGCCGAATTGTGACAACCGAGACAAGCTTCAGCAAGGCC
CTGCTTGCAGTCTCCTCCTCCATGGCCACCCCCCTCACATACCTAGAAGG
ACAGAAGATGTCCTCCTTGTCCTCCTCTTCCTCGAGAGGCTTGAGATTGA
CATCTCGAGGAGCGGAAGGACGTATGTCTGCTTCCTCAGTCGGTGGGAAC
TTGGCAAAGGAGATGCTTAGTTCCTCCTTTTCTTCTCCGGCCCTGGTGGG
GTTCATGGATGTGGACCCATTCGAGAAGAGCAAGAAGCATTTCAAGCGCA
ACACCTCGCTGGCCAAGCTCCTTTTGTAAAGGAGGAAGCGAAAAAGATTT
GAAGGTAGCCTGACTTTCTAGACCATCATCCTCCTCCTGTTCTCTCCCAC
TCTTCTCTCTTTCTCAACAAGAGCATCTGCACCTAAAAGATGACTTGAGA
AGACATGATGATGGCTCGTTCCTGTATATTGATAGATAG
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Coding sequence (CDS) from alignment at scaffold_12:614074..615262-

>mRNA_5163 ID=mRNA_5163|Name=jgi.p|Nanoce1779_2|55382|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_12:614074..615262- (Nannochloropsis oceanica)
ATGTCACGCTCCTACCGGCTCGTGGGAGCCCTTCTTCCCCGTCTTCCCCT
AGCCCGTCTCCTCCTCCTCTTCTTTCTGGTGCACCCAGGATCCTGCGCCA
CCTTTGAGAGCCGTCACTATTTAACACAACGTTACCCCAATCGGGACGTG
ATTCCTCCCGCCAGCCTCCTCCCCTCCCCCGGCCAACGGCGCCGCCATGA
CACCAATCCTGGCTCGCTCCTTTTTGTCCGTCCACCCACTGTGACAGACC
CACAACAAAGCCACAGCCACAAGCACAACAAAAAGGGACAGACCATGCCG
TCCTCTCCAGTGGCTCGCCGCGTCGTGATTGGCAATTTCGTCTCTGAGCT
GGAGAGCAGCAATTACGACTATCGACGGAACGCGGGGCCTCGTCCTCGCC
TTCCCGGCCAGCAAGTGCAACAACAACATCATGCACATGATCAGCAACGG
CAGCAACAGCAAGTTGTCTCCAAACTTTCTTCCTCCCTCACCTCCGTCTC
AGGCGGTGCTTCCGCAATGCCCTCGGCGTCGGTGGGCAGGCTCCTTAAAA
AGTCCGCCGCTTCCTTCGTTGATGCCTATGACGGCGTCATGAGCTTTGTG
GGAAGCCGAATTGTGACAACCGAGACAAGCTTCAGCAAGGCCCTGCTTGC
AGTCTCCTCCTCCATGGCCACCCCCCTCACATACCTAGAAGGACAGAAGA
TGTCCTCCTTGTCCTCCTCTTCCTCGAGAGGCTTGAGATTGACATCTCGA
GGAGCGGAAGGACGTATGTCTGCTTCCTCAGTCGGTGGGAACTTGGCAAA
GGAGATGCTTAGTTCCTCCTTTTCTTCTCCGGCCCTGGTGGGGTTCATGG
ATGTGGACCCATTCGAGAAGAGCAAGAAGCATTTCAAGCGCAACACCTCG
CTGGCCAAGCTCCTTTTGTAA
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Synonyms
Publications