jgi.p|Nanoce1779_2|591589, mRNA_5161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591589
Unique NamemRNA_5161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1427
Alignment locationscaffold_12:608247..609673 -

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Properties
Property NameValue
TranscriptId591675
TrackFilteredModels2
ProteinId591589
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:608247..609673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591589gene_5161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591589mRNA_5161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5161CDS_5161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5161 ID=mRNA_5161|Name=jgi.p|Nanoce1779_2|591589|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp
ACAGAGCCTTGCTTTTGTTCTGCGCCTCATCAGCCCTCCTCGCCCAGCCT
TGGCCTGTCCTTGTTGTCCACTACCTATGCCAAGCGCCGGCGGGAGAGAG
AGGCAGACGCGGAGCTCAAGCTCCTGCACCGACGACGATGGAGAGGCAGA
GGAGACTGTCCTGGTCGCGGCTTTTGGGGCCGCGTCGTTGGGTGAAATGA
AGGAGCAGCCTCAGGACAAGGATAGGGAGGTGCCTCGAGTCGATGGGTGG
GTGGGTAAGAAGAGGAAGAAAAAGAAGACAAAAAAGAAGGAGAAAAAGGG
CACTGCAGGCCGGACGAGGGAGGGGGAGGATGAGACCCAGGAGGCGGCCG
AGGAGGGGCGTAGCACCACTGCCAAAGCCATTACTTTTACTGAAAAGTCT
ATCAAATCACCATCAGACGCATTTAGAATAAACCAATCACCCCAGGAGAG
CGATTCGGCTGCCAAATCACTATCCGGCCCCGTCGCCGCGGTGAAGGAGC
AGAGACCAGAAGATGAAGGGGTATCTCATGAAGCGTCGCCACATGCATCA
CCTGACCCAAAGAAACCCTCGATTTCGTCCACTGTCGTGGCTATCACGGG
CAGCGATGGCACGCCTACTGCCGCTGATGTGGATGGTGCCGTTGCGGCCG
CCGCCGCAGCAGTCCATGCCAACTCCACCAAACCCAGCACCATGTCACTC
ACCAAAGACTACGTCTTGCACCTGCTCTCTGGCGAAATCCTTCCCTCCTC
TCCTCCCCTCGCACCTTCCCCCAGCCATCTTCCCCTTCCTCCTCGCCGCC
AACGGGGGATGGTCAACACAGGCAACGCCTGCTTCCGGAACCTCGTCCTC
CAAGCCCTCCTCTCCTGCGAGCCCTTTTACCGCCTCCTCCTCACCCTCCG
CCCTTTTGTCGTCAACAAACCCCCTCCCTCCCTCCCCCAAGACTTGGAGT
CCCTTCTCCCCACCTGGCTGGGCTTCGCCAAGCTCGCCGTTGCCCTTGAA
GACCCCTCACTCGTCACCCCCTCCTCCTCTTCGTCCTCCGACCTGCCCTC
TCGGACGATGTACCGCAAGAACGAGCTAACCCCCCCCCAAATCAACGGGA
ATATACGCAAGAAGAACCGCAGCAGAAAGCAGCAACCACCACCCTCCTCC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAACAGCAGCAGCAACAACAACAGCGGCAGCAGCGTGAGT
TTTGGATTGCGCCAGTATTACCCGATGATTACCTCGGGTTGGCTTTTGGG
GCGTTTCGGTCGTCGGACGCGGGGGAACAGGAGGATGCACAAGAGTTTAT
GGCCTTCATGTTGGATAGACTCCACGAGGAAGTGAGAGGTGCGGTGAGGA
AGAGAGAGGAGGAGAGGGAGGGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|591589

>mRNA_5161-protein ID=mRNA_5161-protein|Name=jgi.p|Nanoce1779_2|591589|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MKGYLMKRRHMHHLTQRNPRFRPLSWLSRAAMARLLPLMWMVPLRPPPQQ
SMPTPPNPAPCHSPKTTSCTCSLAKSFPPLLPSHLPPAIFPFLLAANGGW
STQATPASGTSSSKPSSPASPFTASSSPSALLSSTNPLPPSPKTWSPFSP
PGWASPSSPLPLKTPHSSPPPPLRPPTCPLGRCTARTS*
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mRNA from alignment at scaffold_12:608247..609673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5161 ID=mRNA_5161|Name=jgi.p|Nanoce1779_2|591589|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp|location=Sequence derived from alignment at scaffold_12:608247..609673- (Nannochloropsis oceanica)
ACAGAGCCTTGCTTTTGTTCTGCGCCTCATCAGCCCTCCTCGCCCAGCCT
TGGCCTGTCCTTGTTGTCCACTACCTATGCCAAGCGCCGGCGGGAGAGAG
AGGCAGACGCGGAGCTCAAGCTCCTGCACCGACGACGATGGAGAGGCAGA
GGAGACTGTCCTGGTCGCGGCTTTTGGGGCCGCGTCGTTGGGTGAAATGA
AGGAGCAGCCTCAGGACAAGGATAGGGAGGTGCCTCGAGTCGATGGGTGG
GTGGGTAAGAAGAGGAAGAAAAAGAAGACAAAAAAGAAGGAGAAAAAGGG
CACTGCAGGCCGGACGAGGGAGGGGGAGGATGAGACCCAGGAGGCGGCCG
AGGAGGGGCGTAGCACCACTGCCAAAGCCATTACTTTTACTGAAAAGTCT
ATCAAATCACCATCAGACGCATTTAGAATAAACCAATCACCCCAGGAGAG
CGATTCGGCTGCCAAATCACTATCCGGCCCCGTCGCCGCGGTGAAGGAGC
AGAGACCAGAAGATGAAGGGGTATCTCATGAAGCGTCGCCACATGCATCA
CCTGACCCAAAGAAACCCTCGATTTCGTCCACTGTCGTGGCTATCACGGG
CAGCGATGGCACGCCTACTGCCGCTGATGTGGATGGTGCCGTTGCGGCCG
CCGCCGCAGCAGTCCATGCCAACTCCACCAAACCCAGCACCATGTCACTC
ACCAAAGACTACGTCTTGCACCTGCTCTCTGGCGAAATCCTTCCCTCCTC
TCCTCCCCTCGCACCTTCCCCCAGCCATCTTCCCCTTCCTCCTCGCCGCC
AACGGGGGATGGTCAACACAGGCAACGCCTGCTTCCGGAACCTCGTCCTC
CAAGCCCTCCTCTCCTGCGAGCCCTTTTACCGCCTCCTCCTCACCCTCCG
CCCTTTTGTCGTCAACAAACCCCCTCCCTCCCTCCCCCAAGACTTGGAGT
CCCTTCTCCCCACCTGGCTGGGCTTCGCCAAGCTCGCCGTTGCCCTTGAA
GACCCCTCACTCGTCACCCCCTCCTCCTCTTCGTCCTCCGACCTGCCCTC
TCGGACGATGTACCGCAAGAACGAGCTAACCCCCCCCCAAATCAACGGGA
ATATACGCAAGAAGAACCGCAGCAGAAAGCAGCAACCACCACCCTCCTCC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAACAGCAGCAGCAACAACAACAGCGGCAGCAGCGTGAGT
TTTGGATTGCGCCAGTATTACCCGATGATTACCTCGGGTTGGCTTTTGGG
GCGTTTCGGTCGTCGGACGCGGGGGAACAGGAGGATGCACAAGAGTTTAT
GGCCTTCATGTTGGATAGACTCCACGAGGAAGTGAGAGGTGCGGTGAGGA
AGAGAGAGGAGGAGAGGGAGGGGGGGG
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Coding sequence (CDS) from alignment at scaffold_12:608247..609673-

>mRNA_5161 ID=mRNA_5161|Name=jgi.p|Nanoce1779_2|591589|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_12:608247..609673- (Nannochloropsis oceanica)
ATGAAGGGGTATCTCATGAAGCGTCGCCACATGCATCACCTGACCCAAAG
AAACCCTCGATTTCGTCCACTGTCGTGGCTATCACGGGCAGCGATGGCAC
GCCTACTGCCGCTGATGTGGATGGTGCCGTTGCGGCCGCCGCCGCAGCAG
TCCATGCCAACTCCACCAAACCCAGCACCATGTCACTCACCAAAGACTAC
GTCTTGCACCTGCTCTCTGGCGAAATCCTTCCCTCCTCTCCTCCCCTCGC
ACCTTCCCCCAGCCATCTTCCCCTTCCTCCTCGCCGCCAACGGGGGATGG
TCAACACAGGCAACGCCTGCTTCCGGAACCTCGTCCTCCAAGCCCTCCTC
TCCTGCGAGCCCTTTTACCGCCTCCTCCTCACCCTCCGCCCTTTTGTCGT
CAACAAACCCCCTCCCTCCCTCCCCCAAGACTTGGAGTCCCTTCTCCCCA
CCTGGCTGGGCTTCGCCAAGCTCGCCGTTGCCCTTGAAGACCCCTCACTC
GTCACCCCCTCCTCCTCTTCGTCCTCCGACCTGCCCTCTCGGACGATGTA
CCGCAAGAACGAGCTAA
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Synonyms
Publications