jgi.p|Nanoce1779_2|591584, mRNA_5160 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591584
Unique Name	mRNA_5160
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	729
Alignment location	scaffold_12:605641..606824 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591670
Track	FilteredModels2
ProteinId	591584

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:605641..606824 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591584	gene_5160	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591584	mRNA_5160-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5160	CDS_5160	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:605641..606824+
coding sequence from alignment at scaffold_12:605641..606824+

mRNA sequence

>mRNA_5160 ID=mRNA_5160|Name=jgi.p|Nanoce1779_2|591584|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
ACAGGCCCCAAGACCATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGT
GGTTGTGGCCTATTGTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGG
CGTCTTCGTCCTGCGCGAGGAAATTCAGCATGTCTGCATCTTCTTCTGTT
TCCTTCTCTTCCTCCTCCTCTACCTCTGCCTTTCTTTCCCCGCTTCGTCG
TCTCCTGAGCTTTGCCCCAGCCCTTGTGCTTGGCCCCCTTCTTCCCGCTG
CCTTGGACGTGCCTTCCGCCCATGCTATTTCGGGGGGTGGCAAGGATTAC
GCGGAGGCCAAAATTGCGGACCAAGACTTCAGTGGCAAGGATTATAGTAA
TAAAGATTTTTCCGGCGCCTTCGCGCAACGGACAAACTTCAAGGGTGCCA
AGCTCATGGGCGCTCGCTTCTACAAATCGGCACTGACGGAGGCTGACTTC
ACGGGTGCGGACCTTTCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGA
CACTATCTTAAAGGATGCTGTTATCAACAACGGCTACTTTACCGAAACGG
TTGTGAAGGTGGGAAGCATTGAGGGGGCGGATTTCTCAGATACGTTGCTC
GATCGCTTCGTACAGAAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCC
GAAGACAAGAGTGGACACACGAGAGTCCTTGCTGTGTGACTGAGGAGAGA
AGGAAGAGAAGGAGGAGGAGGAGGAGGAG

protein sequence of jgi.p|Nanoce1779_2|591584

>mRNA_5160-protein ID=mRNA_5160-protein|Name=jgi.p|Nanoce1779_2|591584|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPPAKLQPLLLVVVAYCLAIRAFVVPIPASSSCARKFSMSASSSVSFSSS
SSTSAFLSPLRRLLSFAPALVLGPLLPAALDVPSAHAISGGGKDYAEAKI
ADQDFSGKDYSNKDFSGAFAQRTNFKGAKLMGARFYKSALTEADFTGADL
SGASFEGANMVDTILKDAVINNGYFTETVVKVGSIEGADFSDTLLDRFVQ
KKLCEKASGTNPKTRVDTRESLLCD*

mRNA from alignment at scaffold_12:605641..606824+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5160 ID=mRNA_5160|Name=jgi.p|Nanoce1779_2|591584|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp|location=Sequence derived from alignment at scaffold_12:605641..606824+ (Nannochloropsis oceanica)
ACAGGCCCCAAGACCATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGT
GGTTGTGGCCTATTGTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGG
CGTCTTCGTCCTGCGCGAGGTACGTGTGCATTGTGCTGCTCTGGAACCCG
CTTCCAGACGCTCGACCTACCCAAAACTTTGCCCATACCAAAATAGGAAA
TTCAGCATGTCTGCATCTTCTTCTGTTTCCTTCTCTTCCTCCTCCTCTAC
CTCTGCCTTTCTTTCCCCGCTTCGTCGTCTCCTGAGCTTTGCCCCAGCCC
TTGTGCTTGGCCCCCTTCTTCCCGCTGCCTTGGACGTGCCTTCCGCCCAT
GCTATTTCGGGGGGTGGCAAGGATTACGCGGAGGCCAAAATTGCGGACCA
AGACTTCAGTGGCAAGGATTATAGTAATAAAGATTTTTCCGGCGCCTTCG
CGGTAGGTACTGCAGTGTGAAGACCTTAAGAAGTGGGAAGTGGAGTGGAA
ACGAGGGTGGGGAGGTATGGCGAGCAGAAGGATGGGGTTGGAATGGAAGG
AGGACAAAAGAAGACTGGGTAATATAATTCCATCACAAACATGCATGTGC
ACACCCACACCCTTCACACACATACACACACACACACACACATACACACA
CATCCCATAACAGCAACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCG
CTCGCTTCTACAAATCGGCACTGACGGAGGCTGACTTCACGGGTACGTTG
CGATTCTTTTCTTTCCTTGTCTCTAGGCTCTATCAATTGCTTGGGTGCAC
AGAATAGAGTACCAAGGAAATTTTCCCTCCCTCCCTCTCGCCCTCCCTCC
CTCTCGCCCTCCCTCTCACCCTCCCACCCTCCCACCCTCCCCCCTTACCT
TACTTCCAGGTGCGGACCTTTCAGGCGCATCCTTCGAAGGCGCGAACATG
GTTGACACTATCTTAAAGGATGCTGTTATCAACAACGGCTACTTTACCGA
AACGGTTGTGAAGGTGGGAAGCATTGAGGGGGCGGATTTCTCAGATACGT
TGCTCGATCGCTTCGTACAGAAGAAGCTGTGTGAGAAGGCGTCAGGCACC
AACCCGAAGACAAGAGTGGACACACGAGAGTCCTTGCTGTGTGACTGAGG
AGAGAAGGAAGAGAAGGAGGAGGAGGAGGAGGAG

Coding sequence (CDS) from alignment at scaffold_12:605641..606824+

>mRNA_5160 ID=mRNA_5160|Name=jgi.p|Nanoce1779_2|591584|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_12:605641..606824+ (Nannochloropsis oceanica)
ATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGCCTATTG
TCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGTCCTGCG
CGAGGAAATTCAGCATGTCTGCATCTTCTTCTGTTTCCTTCTCTTCCTCC
TCCTCTACCTCTGCCTTTCTTTCCCCGCTTCGTCGTCTCCTGAGCTTTGC
CCCAGCCCTTGTGCTTGGCCCCCTTCTTCCCGCTGCCTTGGACGTGCCTT
CCGCCCATGCTATTTCGGGGGGTGGCAAGGATTACGCGGAGGCCAAAATT
GCGGACCAAGACTTCAGTGGCAAGGATTATAGTAATAAAGATTTTTCCGG
CGCCTTCGCGCAACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCGCTC
GCTTCTACAAATCGGCACTGACGGAGGCTGACTTCACGGGTGCGGACCTT
TCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTTAAAGGA
TGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGGTGGGAA
GCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTCGTACAG
AAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAGAGTGGA
CACACGAGAGTCCTTGCTGTGTGACTGAATGCCTCCCGCAAAGCTTCAAC
CACTGCTGCTGGTGGTTGTGGCCTATTGTCTGGCTATTCGTGCTTTTGTA
GTCCCCATACCGGCGTCTTCGTCCTGCGCGAGGAAATTCAGCATGTCTGC
ATCTTCTTCTGTTTCCTTCTCTTCCTCCTCCTCTACCTCTGCCTTTCTTT
CCCCGCTTCGTCGTCTCCTGAGCTTTGCCCCAGCCCTTGTGCTTGGCCCC
CTTCTTCCCGCTGCCTTGGACGTGCCTTCCGCCCATGCTATTTCGGGGGG
TGGCAAGGATTACGCGGAGGCCAAAATTGCGGACCAAGACTTCAGTGGCA
AGGATTATAGTAATAAAGATTTTTCCGGCGCCTTCGCGCAACGGACAAAC
TTCAAGGGTGCCAAGCTCATGGGCGCTCGCTTCTACAAATCGGCACTGAC
GGAGGCTGACTTCACGGGTGCGGACCTTTCAGGCGCATCCTTCGAAGGCG
CGAACATGGTTGACACTATCTTAAAGGATGCTGTTATCAACAACGGCTAC
TTTACCGAAACGGTTGTGAAGGTGGGAAGCATTGAGGGGGCGGATTTCTC
AGATACGTTGCTCGATCGCTTCGTACAGAAGAAGCTGTGTGAGAAGGCGT
CAGGCACCAACCCGAAGACAAGAGTGGACACACGAGAGTCCTTGCTGTGT
GACTGAATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGC
CTATTGTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGT
CCTGCGCGAGGAAATTCAGCATGTCTGCATCTTCTTCTGTTTCCTTCTCT
TCCTCCTCCTCTACCTCTGCCTTTCTTTCCCCGCTTCGTCGTCTCCTGAG
CTTTGCCCCAGCCCTTGTGCTTGGCCCCCTTCTTCCCGCTGCCTTGGACG
TGCCTTCCGCCCATGCTATTTCGGGGGGTGGCAAGGATTACGCGGAGGCC
AAAATTGCGGACCAAGACTTCAGTGGCAAGGATTATAGTAATAAAGATTT
TTCCGGCGCCTTCGCGCAACGGACAAACTTCAAGGGTGCCAAGCTCATGG
GCGCTCGCTTCTACAAATCGGCACTGACGGAGGCTGACTTCACGGGTGCG
GACCTTTCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTT
AAAGGATGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGG
TGGGAAGCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTC
GTACAGAAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAG
AGTGGACACACGAGAGTCCTTGCTGTGTGACTGAATGCCTCCCGCAAAGC
TTCAACCACTGCTGCTGGTGGTTGTGGCCTATTGTCTGGCTATTCGTGCT
TTTGTAGTCCCCATACCGGCGTCTTCGTCCTGCGCGAGGAAATTCAGCAT
GTCTGCATCTTCTTCTGTTTCCTTCTCTTCCTCCTCCTCTACCTCTGCCT
TTCTTTCCCCGCTTCGTCGTCTCCTGAGCTTTGCCCCAGCCCTTGTGCTT
GGCCCCCTTCTTCCCGCTGCCTTGGACGTGCCTTCCGCCCATGCTATTTC
GGGGGGTGGCAAGGATTACGCGGAGGCCAAAATTGCGGACCAAGACTTCA
GTGGCAAGGATTATAGTAATAAAGATTTTTCCGGCGCCTTCGCGCAACGG
ACAAACTTCAAGGGTGCCAAGCTCATGGGCGCTCGCTTCTACAAATCGGC
ACTGACGGAGGCTGACTTCACGGGTGCGGACCTTTCAGGCGCATCCTTCG
AAGGCGCGAACATGGTTGACACTATCTTAAAGGATGCTGTTATCAACAAC
GGCTACTTTACCGAAACGGTTGTGAAGGTGGGAAGCATTGAGGGGGCGGA
TTTCTCAGATACGTTGCTCGATCGCTTCGTACAGAAGAAGCTGTGTGAGA
AGGCGTCAGGCACCAACCCGAAGACAAGAGTGGACACACGAGAGTCCTTG
CTGTGTGACTGA

Synonyms

Publications