jgi.p|Nanoce1779_2|577548, mRNA_516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577548
Unique NamemRNA_516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length814
Alignment locationscaffold_3:1251047..1251933 -

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Properties
Property NameValue
TranscriptId577634
TrackFilteredModels2
ProteinId577548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1251047..1251933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577548gene_516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577548mRNA_516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_516CDS_516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_516 ID=mRNA_516|Name=jgi.p|Nanoce1779_2|577548|organism=Nannochloropsis oceanica|type=mRNA|length=814bp
AGGTATGGTCAGCCGAACAGACCGAGTCGTGAGGACCCTGCTGCTGGTGC
TGCTACTTCTTCTGCCGGTTACTACCTTTGCAGCAATGCTCGCCGTAGCC
TCCGCCACTACCGGTGGCGACGCAGTTGCCTATGTCCGCGTCACAACTTC
CTTGTACCAGCAACGTCGTTTATCACTCGCCGCCCCCTTTTCGCATTCAC
GATCATGGATCACCTTCAAGCGTGGCGGTGCCACCAGCAACAATACAGAG
GCCTTATTGTTACCTACCCCTGCGTTTGCTGCCGCCGAGGATATTTGGAA
CACGCCCCAGGGCTTGGCATGGACACAACTTTTGCTCGATTCGTTCGAAA
AATGCACAGGCTCTGCTCTTCTTCAGGATAGAGAAGAACTCGACCCAATG
GAGCAAGCCCGTGCCCTCTTCCTTTCATCTCGCGTTGTCGTCTCACATCA
GACACAGGAGGATCCTGTGCTGTGCTATGGTAACGCCAAGGCTTTGGCGC
TATGGGAAATGGACCTGTTAAATTTGACCTCGTCTCCGTCACGGTTGACG
GCCGAGCCTGTTGCCAGAGAGGAAAGGCAGCGGCTCCTCGACACGGTCAA
GGCCAAAGGATTCATTGACGATTATCATGGGGTGCGGATATCTTCAACAG
GCAAAAGATTTGAAATCTTACAGGCGGTCGTATGGGAGATTTATGACTTA
GATGGTGTGAGAAGAGGACAGGCCGCCACTTTCAGTGATTGGAATGAATT
GTGAGAAGTGGAATTAGAGCTGGAAATCAGGGAAGGAAACCATAAAGTAA
TAATCGTGAACATA
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protein sequence of jgi.p|Nanoce1779_2|577548

>mRNA_516-protein ID=mRNA_516-protein|Name=jgi.p|Nanoce1779_2|577548|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MVSRTDRVVRTLLLVLLLLLPVTTFAAMLAVASATTGGDAVAYVRVTTSL
YQQRRLSLAAPFSHSRSWITFKRGGATSNNTEALLLPTPAFAAAEDIWNT
PQGLAWTQLLLDSFEKCTGSALLQDREELDPMEQARALFLSSRVVVSHQT
QEDPVLCYGNAKALALWEMDLLNLTSSPSRLTAEPVAREERQRLLDTVKA
KGFIDDYHGVRISSTGKRFEILQAVVWEIYDLDGVRRGQAATFSDWNEL*
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mRNA from alignment at scaffold_3:1251047..1251933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_516 ID=mRNA_516|Name=jgi.p|Nanoce1779_2|577548|organism=Nannochloropsis oceanica|type=mRNA|length=887bp|location=Sequence derived from alignment at scaffold_3:1251047..1251933- (Nannochloropsis oceanica)
AGGTATGGTCAGCCGAACAGACCGAGTCGTGAGGACCCTGCTGCTGGTGC
TGCTACTTCTTCTGCCGGTTACTACCTTTGCAGCAATGCTCGCCGTAGCC
TCCGCCACTACCGGTGGCGACGCAGTTGCCTATGTCCGCGTCACAACTTC
CTTGTACCAGCAACGTCGTTTATCACTCGCCGCCCCCTTTTCGCATTCAC
GATCATGGATCACCTTCAAGGTATGGTAGACTCATCCTCCTCCTCTTTCA
ACGAGAAGCTCATCGACTTCCCCTCGGATCCAACGTTCACAAGCGTGGCG
GTGCCACCAGCAACAATACAGAGGCCTTATTGTTACCTACCCCTGCGTTT
GCTGCCGCCGAGGATATTTGGAACACGCCCCAGGGCTTGGCATGGACACA
ACTTTTGCTCGATTCGTTCGAAAAATGCACAGGCTCTGCTCTTCTTCAGG
ATAGAGAAGAACTCGACCCAATGGAGCAAGCCCGTGCCCTCTTCCTTTCA
TCTCGCGTTGTCGTCTCACATCAGACACAGGAGGATCCTGTGCTGTGCTA
TGGTAACGCCAAGGCTTTGGCGCTATGGGAAATGGACCTGTTAAATTTGA
CCTCGTCTCCGTCACGGTTGACGGCCGAGCCTGTTGCCAGAGAGGAAAGG
CAGCGGCTCCTCGACACGGTCAAGGCCAAAGGATTCATTGACGATTATCA
TGGGGTGCGGATATCTTCAACAGGCAAAAGATTTGAAATCTTACAGGCGG
TCGTATGGGAGATTTATGACTTAGATGGTGTGAGAAGAGGACAGGCCGCC
ACTTTCAGTGATTGGAATGAATTGTGAGAAGTGGAATTAGAGCTGGAAAT
CAGGGAAGGAAACCATAAAGTAATAATCGTGAACATA
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Coding sequence (CDS) from alignment at scaffold_3:1251047..1251933-

>mRNA_516 ID=mRNA_516|Name=jgi.p|Nanoce1779_2|577548|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_3:1251047..1251933- (Nannochloropsis oceanica)
CGTGGCGGTGCCACCAGCAACAATACAGAGGCCTTATTGTTACCTACCCC
TGCGTTTGCTGCCGCCGAGGATATTTGGAACACGCCCCAGGGCTTGGCAT
GGACACAACTTTTGCTCGATTCGTTCGAAAAATGCACAGGCTCTGCTCTT
CTTCAGGATAGAGAAGAACTCGACCCAATGGAGCAAGCCCGTGCCCTCTT
CCTTTCATCTCGCGTTGTCGTCTCACATCAGACACAGGAGGATCCTGTGC
TGTGCTATGGTAACGCCAAGGCTTTGGCGCTATGGGAAATGGACCTGTTA
AATTTGACCTCGTCTCCGTCACGGTTGACGGCCGAGCCTGTTGCCAGAGA
GGAAAGGCAGCGGCTCCTCGACACGGTCAAGGCCAAAGGATTCATTGACG
ATTATCATGGGGTGCGGATATCTTCAACAGGCAAAAGATTTGAAATCTTA
CAGGCGGTCGTATGGGAGATTTATGACTTAGATGGTGTGAGAAGAGGACA
GGCCGCCACTTTCAGTGATTGGAATGAATTGTGAATGGTCAGCCGAACAG
ACCGAGTCGTGAGGACCCTGCTGCTGGTGCTGCTACTTCTTCTGCCGGTT
ACTACCTTTGCAGCAATGCTCGCCGTAGCCTCCGCCACTACCGGTGGCGA
CGCAGTTGCCTATGTCCGCGTCACAACTTCCTTGTACCAGCAACGTCGTT
TATCACTCGCCGCCCCCTTTTCGCATTCACGATCATGGATCACCTTCAAG
CGTGGCGGTGCCACCAGCAACAATACAGAGGCCTTATTGTTACCTACCCC
TGCGTTTGCTGCCGCCGAGGATATTTGGAACACGCCCCAGGGCTTGGCAT
GGACACAACTTTTGCTCGATTCGTTCGAAAAATGCACAGGCTCTGCTCTT
CTTCAGGATAGAGAAGAACTCGACCCAATGGAGCAAGCCCGTGCCCTCTT
CCTTTCATCTCGCGTTGTCGTCTCACATCAGACACAGGAGGATCCTGTGC
TGTGCTATGGTAACGCCAAGGCTTTGGCGCTATGGGAAATGGACCTGTTA
AATTTGACCTCGTCTCCGTCACGGTTGACGGCCGAGCCTGTTGCCAGAGA
GGAAAGGCAGCGGCTCCTCGACACGGTCAAGGCCAAAGGATTCATTGACG
ATTATCATGGGGTGCGGATATCTTCAACAGGCAAAAGATTTGAAATCTTA
CAGGCGGTCGTATGGGAGATTTATGACTTAGATGGTGTGAGAAGAGGACA
GGCCGCCACTTTCAGTGATTGGAATGAATTGTGAATGGTCAGCCGAACAG
ACCGAGTCGTGAGGACCCTGCTGCTGGTGCTGCTACTTCTTCTGCCGGTT
ACTACCTTTGCAGCAATGCTCGCCGTAGCCTCCGCCACTACCGGTGGCGA
CGCAGTTGCCTATGTCCGCGTCACAACTTCCTTGTACCAGCAACGTCGTT
TATCACTCGCCGCCCCCTTTTCGCATTCACGATCATGGATCACCTTCAAG
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Synonyms
Publications