jgi.p|Nanoce1779_2|630841, mRNA_5159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630841
Unique NamemRNA_5159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1167
Alignment locationscaffold_12:603747..605247 -

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Properties
Property NameValue
TranscriptId630927
TrackFilteredModels2
ProteinId630841
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:603747..605247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630841gene_5159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630841mRNA_5159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5159CDS_5159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5159 ID=mRNA_5159|Name=jgi.p|Nanoce1779_2|630841|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGCCGATCGATGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCT
TGAAAGCAGTTCGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCC
CCCACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
TCCGCCGCCGCCGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGA
CGTCTTCTCCTTGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACAC
TGGCCTTGATCCTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGC
CCTGCGATAGAGCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTAAT
CAAGCAGATCCCGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCC
ACGCCGCGCTTAACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCG
CTTGCACGCTTGGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAAT
GGGGCGGCGCTTGGACCGAGACGAAGTCATCCACGCCGCACATTGCGAAT
GTGCCGCTCAAGGCCAAACACAGCAGGTACAGGGTGATGCGGTACAGTAT
CATTTTGTGTGCCTCTTCCCCGCGTCTGATTCTTCCCCTCACTTGATTGT
TGAGTTGGATGGCTTGAAGACATCTCCAGTCATGCATGTGACGGGAAGAG
AAGAGGGAAAGGAAGAGGAAGAAGAAAAAGGAGAAAAGGAATCGTTTTTA
CTGTCTGGCGCCAAGGTGTTAAAACGAGAGTTTCTAGCACGCTTCGCCAA
CCCCGAAGAGACGACCATGAACGTCTTGGCTTTGGTGCGGGAGGAAGAGG
ACGAAGGAGAATCGTAGGTTATGTGTCGCAGCTTTTGAGGACAAGGAACA
AAGAATGACGAAGGAGTAAGGCCCTTTTGAAACAGGCATGGAACCAAGAA
TGTTTAAAAGTTCTCAGGGATTCTATGCCGCTCTGTCGCTCCTTCTTTTT
CACTGTTATTAATAACCTTTATGGTGAGGAGGCTTTCAGTGAAGGGAAAC
CAAAGGGTCAGTAGCACGGGGCGCATGAACCGAAGACACAAATTTGCAAT
GTGACAGAATGTAACGACCACAAGTATACAGACGCAAGATAAAAATACTG
AAATTTATTTTGATTGA
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protein sequence of jgi.p|Nanoce1779_2|630841

>mRNA_5159-protein ID=mRNA_5159-protein|Name=jgi.p|Nanoce1779_2|630841|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MPIDVPPVASGDRWPALESSSEAFTALLHKLLRPHSSSSSSSSSSSSSSS
SAAADATPTSSPYSFQDVFSLDEDCLAFVPGKTLALILAYDHSAIPAASG
PAIERPTSTFPANLVLIKQIPALDNACGTIALIHAALNALPSSVTSSSSA
LARLVLPGEEEGGSEEMGRRLDRDEVIHAAHCECAAQGQTQQVQGDAVQY
HFVCLFPASDSSPHLIVELDGLKTSPVMHVTGREEGKEEEEEKGEKESFL
LSGAKVLKREFLARFANPEETTMNVLALVREEEDEGES*
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mRNA from alignment at scaffold_12:603747..605247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5159 ID=mRNA_5159|Name=jgi.p|Nanoce1779_2|630841|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at scaffold_12:603747..605247- (Nannochloropsis oceanica)
ATGCCGATCGATGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCT
TGAAAGCAGTTCGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCC
CCCACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
TCCGCCGCCGCCGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGA
CGTCTTCTCCTTGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACAC
TGGCCTTGATCCTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGC
CCTGCGATAGAGCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTAAT
CAAGCAGATCCCGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCC
ACGCCGCGCTTAACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCG
CTTGCACGCTTGGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAAT
GGGGCGGCGCTTGGACCGAGACGAAGTCATCCACGCCGCACATTGGTACG
TCAACAACGTAGAGATTGGCGGTGGTAGAGATTCTGGGAATATTAAGCAG
TATGCACGCATGAGTAGGTCTAGTGCGTTGCTTTCAATGACTTTTGCTGT
GATGGGAATGGGAGATATACTTGCTTGAATTGTGCATGCCTTTAGATATA
TGTGCCTGTGTTAACGTTCCGACTCTGCCACCATCCTGCCATTGATCACC
CAATGCAATTTTATGGCACAACTGCACCATGTACTTTCAAGCAACCAAAT
AGCACAAGTGAGAATGCAATTAAAGCTCAACGCTGTCTTTCCCTGTCACT
TCCATCCTCCCCCCTCTCTACCCACACAGCGAATGTGCCGCTCAAGGCCA
AACACAGCAGGTACAGGGTGATGCGGTACAGTATCATTTTGTGTGCCTCT
TCCCCGCGTCTGATTCTTCCCCTCACTTGATTGTTGAGTTGGATGGCTTG
AAGACATCTCCAGTCATGCATGTGACGGGAAGAGAAGAGGGAAAGGAAGA
GGAAGAAGAAAAAGGAGAAAAGGAATCGTTTTTACTGTCTGGCGCCAAGG
TGTTAAAACGAGAGTTTCTAGCACGCTTCGCCAACCCCGAAGAGACGACC
ATGAACGTCTTGGCTTTGGTGCGGGAGGAAGAGGACGAAGGAGAATCGTA
GGTTATGTGTCGCAGCTTTTGAGGACAAGGAACAAAGAATGACGAAGGAG
TAAGGCCCTTTTGAAACAGGCATGGAACCAAGAATGTTTAAAAGTTCTCA
GGGATTCTATGCCGCTCTGTCGCTCCTTCTTTTTCACTGTTATTAATAAC
CTTTATGGTGAGGAGGCTTTCAGTGAAGGGAAACCAAAGGGTCAGTAGCA
CGGGGCGCATGAACCGAAGACACAAATTTGCAATGTGACAGAATGTAACG
ACCACAAGTATACAGACGCAAGATAAAAATACTGAAATTTATTTTGATTG
A
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Coding sequence (CDS) from alignment at scaffold_12:603747..605247-

>mRNA_5159 ID=mRNA_5159|Name=jgi.p|Nanoce1779_2|630841|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_12:603747..605247- (Nannochloropsis oceanica)
CGAATGTGCCGCTCAAGGCCAAACACAGCAGGTACAGGGTGATGCGGTAC
AGTATCATTTTGTGTGCCTCTTCCCCGCGTCTGATTCTTCCCCTCACTTG
ATTGTTGAGTTGGATGGCTTGAAGACATCTCCAGTCATGCATGTGACGGG
AAGAGAAGAGGGAAAGGAAGAGGAAGAAGAAAAAGGAGAAAAGGAATCGT
TTTTACTGTCTGGCGCCAAGGTGTTAAAACGAGAGTTTCTAGCACGCTTC
GCCAACCCCGAAGAGACGACCATGAACGTCTTGGCTTTGGTGCGGGAGGA
AGAGGACGAAGGAGAATCGTAGATGCCGATCGATGTGCCGCCAGTCGCGA
GTGGGGACCGTTGGCCCGCCCTTGAAAGCAGTTCGGAGGCCTTTACCGCT
TTGCTTCACAAGCTCCTGCGCCCCCACTCTTCTTCTTCTTCTTCTTCTTC
TTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGATGCTACTCCCACCT
CCTCCCCCTACTCCTTTCAAGACGTCTTCTCCTTGGATGAGGACTGCCTG
GCCTTTGTGCCGGGAAAGACACTGGCCTTGATCCTTGCGTACGATCACAG
CGCTATTCCTGCGGCGTCGGGCCCTGCGATAGAGCGGCCGACCAGCACTT
TCCCAGCCAACCTGGTTTTAATCAAGCAGATCCCGGCACTCGACAACGCC
TGTGGCACAATTGCATTGATCCACGCCGCGCTTAACGCGCTTCCGTCTTC
TGTCACATCTTCTTCGTCTGCGCTTGCACGCTTGGTGCTACCAGGGGAAG
AGGAAGGAGGGAGCGAGGAAATGGGGCGGCGCTTGGACCGAGACGAAGTC
ATCCACGCCGCACATTGCGAATGTGCCGCTCAAGGCCAAACACAGCAGGT
ACAGGGTGATGCGGTACAGTATCATTTTGTGTGCCTCTTCCCCGCGTCTG
ATTCTTCCCCTCACTTGATTGTTGAGTTGGATGGCTTGAAGACATCTCCA
GTCATGCATGTGACGGGAAGAGAAGAGGGAAAGGAAGAGGAAGAAGAAAA
AGGAGAAAAGGAATCGTTTTTACTGTCTGGCGCCAAGGTGTTAAAACGAG
AGTTTCTAGCACGCTTCGCCAACCCCGAAGAGACGACCATGAACGTCTTG
GCTTTGGTGCGGGAGGAAGAGGACGAAGGAGAATCGTAGATGCCGATCGA
TGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCTTGAAAGCAGTT
CGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCCCCCACTCTTCT
TCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGC
CGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGACGTCTTCTCCT
TGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACACTGGCCTTGATC
CTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGCCCTGCGATAGA
GCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTAATCAAGCAGATCC
CGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCCACGCCGCGCTT
AACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCGCTTGCACGCTT
GGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAATGGGGCGGCGCT
TGGACCGAGACGAAGTCATCCACGCCGCACATTG
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Synonyms
Publications