jgi.p|Nanoce1779_2|591574, mRNA_5156 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591574
Unique Name	mRNA_5156
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1720
Alignment location	scaffold_12:599555..601274 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591660
Track	FilteredModels2
ProteinId	591574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:599555..601274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591574	gene_5156	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591574	mRNA_5156-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5156	CDS_5156	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:599555..601274+
coding sequence from alignment at scaffold_12:599555..601274+

mRNA sequence

>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Nanoce1779_2|591574|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp
CAGATGAACAAGGGAGGTTGCCCCTTGCCACATTCACAGCAGCCGCCACC
GTCGTCCTCGTCTGCGTCCTCGTCTCCACCCTCTCACTCCCACGCTCATC
ATCCACATTGCACGTTCCGACACCTCGTCGTCCTTCCTTTTGTCCTCGTC
CAATTACTGGTTCTACTGCCACAAACTCTACCCACCAACGCCTTTCTTGT
CTATACGCCCAGTCAACGCACGCGTAGCACTTATCCCTCATCCTATACTG
CACGGAGAAGTGCAAATTTCTTCCCTCTCCAGGCAAGCACCCTCATCATG
AACGAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTATCAA
GGACAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCGAGC
ACATCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCGTTT
GATCGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCTAGC
AATGCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGGTCC
GCGCAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTGCTC
GACATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTCCAC
CGCAGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGCTTG
GCAACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAAGCT
TTGGGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCATTGA
GACCACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCATGA
AAAAGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTTAAT
ATTGTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGTGGG
CGTCTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGGAGA
TAGGGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGATGAG
ATATCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTCACC
GGAGGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATCCGT
TGACGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGAGAC
GCAAACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCAGGA
AAAGGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCTTGT
ATGTGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCCTAT
GAGGTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGATTGC
GTTTGCGAAGATGTTGAGGAATAGGGGGTAGAGTAAGAGAAAATCGAATG
AGAGAGCAAACAGCAGCGTGAAGAGAGAGTAAAGATCGGTTGGTTGGATG
GGTGGAGGGAAATGAGGTTGAGGGAGATACTAGAGGATGAGGCTGTAGGC
GTTAAGAGGACGTCTGTGGCGGCACATGCCGAGATGGCAAATGCTCGCAC
GCATGACTTAATTACAAAAGTCGGTCTCAAACACACACGATACAAGAGCA
ACAGAGTAGCAGCAACAGGAAAAAATGACCCACTTAATGAAATAGAACAA
CAAAGACATGAAAGTCTCAA

protein sequence of jgi.p|Nanoce1779_2|591574

>mRNA_5156-protein ID=mRNA_5156-protein|Name=jgi.p|Nanoce1779_2|591574|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MNKGGCPLPHSQQPPPSSSSASSSPPSHSHAHHPHCTFRHLVVLPFVLVQ
LLVLLPQTLPTNAFLVYTPSQRTRSTYPSSYTARRSANFFPLQASTLIMN
EEVEANTKSGLPKPIKDKNVVLTDTSLKPFLEHIIAGASLSSTDVEAAFD
RILAGADPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRFPVNVTGKLLD
IVGTGGDGAHTINISTAAMILAAACGCKAAKLGNRSVSSKCGSADVLEAL
GIDMDLTAEQVAECIETTGVGFMFAPVVHPTMKKVAPVRRALGVRTAFNI
VGPLLNAAGAQHAVVGVFHERLLDVLAGTLMEIGTVDRALIIHGAGLDEI
SPLGPSTIVELRNVSPEGQPRRYEKKTYEFDPLTCGVPRCEIGDLRGGDA
NENAALLREVLKAGQEKGAKRDAVVLNAAAGLYVYGMVDSMEEGVKKAYE
VLGDGRALVKLEEWIAFAKMLRNRG*

mRNA from alignment at scaffold_12:599555..601274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Nanoce1779_2|591574|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_12:599555..601274+ (Nannochloropsis oceanica)
CAGATGAACAAGGGAGGTTGCCCCTTGCCACATTCACAGCAGCCGCCACC
GTCGTCCTCGTCTGCGTCCTCGTCTCCACCCTCTCACTCCCACGCTCATC
ATCCACATTGCACGTTCCGACACCTCGTCGTCCTTCCTTTTGTCCTCGTC
CAATTACTGGTTCTACTGCCACAAACTCTACCCACCAACGCCTTTCTTGT
CTATACGCCCAGTCAACGCACGCGTAGCACTTATCCCTCATCCTATACTG
CACGGAGAAGTGCAAATTTCTTCCCTCTCCAGGCAAGCACCCTCATCATG
AACGAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTATCAA
GGACAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCGAGC
ACATCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCGTTT
GATCGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCTAGC
AATGCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGGTCC
GCGCAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTGCTC
GACATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTCCAC
CGCAGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGCTTG
GCAACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAAGCT
TTGGGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCATTGA
GACCACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCATGA
AAAAGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTTAAT
ATTGTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGTGGG
CGTCTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGGAGA
TAGGGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGATGAG
ATATCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTCACC
GGAGGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATCCGT
TGACGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGAGAC
GCAAACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCAGGA
AAAGGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCTTGT
ATGTGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCCTAT
GAGGTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGATTGC
GTTTGCGAAGATGTTGAGGAATAGGGGGTAGAGTAAGAGAAAATCGAATG
AGAGAGCAAACAGCAGCGTGAAGAGAGAGTAAAGATCGGTTGGTTGGATG
GGTGGAGGGAAATGAGGTTGAGGGAGATACTAGAGGATGAGGCTGTAGGC
GTTAAGAGGACGTCTGTGGCGGCACATGCCGAGATGGCAAATGCTCGCAC
GCATGACTTAATTACAAAAGTCGGTCTCAAACACACACGATACAAGAGCA
ACAGAGTAGCAGCAACAGGAAAAAATGACCCACTTAATGAAATAGAACAA
CAAAGACATGAAAGTCTCAA

Coding sequence (CDS) from alignment at scaffold_12:599555..601274+

>mRNA_5156 ID=mRNA_5156|Name=jgi.p|Nanoce1779_2|591574|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_12:599555..601274+ (Nannochloropsis oceanica)
ATGAACAAGGGAGGTTGCCCCTTGCCACATTCACAGCAGCCGCCACCGTC
GTCCTCGTCTGCGTCCTCGTCTCCACCCTCTCACTCCCACGCTCATCATC
CACATTGCACGTTCCGACACCTCGTCGTCCTTCCTTTTGTCCTCGTCCAA
TTACTGGTTCTACTGCCACAAACTCTACCCACCAACGCCTTTCTTGTCTA
TACGCCCAGTCAACGCACGCGTAGCACTTATCCCTCATCCTATACTGCAC
GGAGAAGTGCAAATTTCTTCCCTCTCCAGGCAAGCACCCTCATCATGAAC
GAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTATCAAGGA
CAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCGAGCACA
TCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCGTTTGAT
CGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCTAGCAAT
GCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGGTCCGCG
CAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTGCTCGAC
ATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTCCACCGC
AGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGCTTGGCA
ACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAAGCTTTG
GGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCATTGAGAC
CACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCATGAAAA
AGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTTAATATT
GTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGTGGGCGT
CTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGGAGATAG
GGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGATGAGATA
TCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTCACCGGA
GGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATCCGTTGA
CGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGAGACGCA
AACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCAGGAAAA
GGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCTTGTATG
TGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCCTATGAG
GTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGATTGCGTT
TGCGAAGATGTTGAGGAATAGGGGGTAG

Synonyms

Publications