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Properties
| Property Name | Value |
|---|
| TranscriptId | 542767 |
| Track | FilteredModels2 |
| ProteinId | 542681 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:596667..599139 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5155 ID=mRNA_5155|Name=jgi.p|Nanoce1779_2|542681|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp
ATGTTTCAGAGCGCGGGGGCGGCTGCGATCGAGTGCCTGGCGGAGTGTAT
GGACGTGCCTTTGGTACGAGCACCCATGTCGGGTCACAGCGGGCACCAAG
GCTTGCATTATACGCCTACAGAAGGAGACGAGGTGGAGGATCTGTATTCC
TTGCTTGCGCGTGTTCAACATCAATTTCCGGACGTGCAGGCCGTGGCAAG
TGGGGCGGTTCTATCGACCTATCAACGCACACGGGTGGAAAGCGTCTGTG
AACGGCTAGGCTTGCGGTCCCTAGCATTTCTCTGGCGATACGATCAAACA
AAATTATTACAGGAAATGGTTGAGTACGGTTTGGAAGCTGTTATAGTGAA
AGTCTCTTCTCAGGGGCTGTCTCCACACAAGCATTTGGGCAAGTCGATTG
CCGAGCTCCGGCCGCTTTTTGCACGACTGCATGCTCAACATGGATTTCAC
GTGGCAGGGGAGGGGGGGGAGTACGAGACGTTGACATTAAATGCGCCATT
TTTTAGGAAGAGATTGGTGTTGGACGAGACGGAGGTCGTGATTCACGCGG
ACGATGTGTATACGCCTGTCGGGTTGTTGCACATTCATCGGTGTCATATC
GAGGCTAAGGACGTTGGGGAGGACATTCGGGGTGCAAGCACTATCGCTGA
AAGGAACGTCAGGGGAAGATCACGGCCACGGCACATCCGGCCTCTGCCCC
ACATCTGGCGGCAAGGAAAGCAACTTAATATCTCTGGCCTCTGCGTACCG
ACAACGCGATCCCAGCCATCACAAACAAGTAAACCTCATCAGCGAGCCGC
CGATCAAATGCGTCACTGTCTCGAATCCCTTCAAGCAGGCCTGGCCCTCC
ATGGACTCACCCTCCACGATGTCGTCTTCGTCCACCTCTATCTCCGCTCC
ATGTCCTCCTTCGCCGCCATTAACGCCGTATATTGCCAAATGCCTTTCCA
CGCGTTACATCCTCCTTCCCGCTCATGCGTCGAACTCCCTTTTCCTCAAC
CCTTCGACAGCGAAGACGGAAGAGGAGGCAGAGGAGGAGGAGGGGGAGTA
GAAGTCCTCCTCGATTGCATGGCGCTAGCCGGCTCAGGCGCCGCGATGGA
CACCGGACGATTTCAAACCCGTCAAGTACTGCACGTCAAGAGTCTCTCTG
GATGGGCCCCTCTCTGCATCGGTCCCTATAGCCAAGCGAATATGCTCGCG
CACGGCCACCTCCTCTTCCTAGCAGGAGCAATTGGACTTGCACCCTCAAC
CATGACCCTCGTCACCCCTCCCTCCCTTGAGGCATCGCAGGCCCTCTGTA
ATTGTGCAGCAGTCTTACATGCTCTTCGATCGTCGTTGCGGACGGCGGTA
ATGGTGATGGTGTACGTGAGTGTGGGGATGGAAGGAGAGAGGGAGGGAGG
AACGGGATGGTCGTCGGCTGCGGTGGCGGAATGGAAGACCATGTGCCGCT
TGGACGCCGGCTATCAGAAAGCGGATAAAGACGAGGATAACAGCAACACA
AAGAGAAACAACAGTGTCAGCCGCAGCAACTGTAGCAGCAGTGATAGTGA
TGACGAGGATGAGGAGGATAGGTTTCTCGAGACCTTCCCTGCGCCTGTCT
TCCTCCCGGTGGGTGTGCCTGGCCTGCCGCGTGGCGCAGCCATCGAGTTC
GAAGTCATGGCATTATCAACAGCGTTTGCGCGAGAACAGATGCTGATAAA
AAGTACCGAGCGGGGAAGGCCGATGCCAGTTAGAATGGAGGAGAAAGGTG
GTTGTTGTCCCTTTCCGTTGCCTTTTCAGCCCGCCGCTACTTATCAGAAA
GCCGGCGACGAGATCTCATCATCATCCTCTAGTCTTTCCTATGCCTGGGA
AGCTCTTCATTTGCCTTATGTACTTAGCTTGCTCAGCCTCTCCCTTCTCA
TAGACGATGATCAGGAAGATGAGGAGCAAGAAACAGGAGTGGCTGCCTCC
TCCTGCAGCTGTCTCCTCTTAGACTACTCCCACGTCGCTCTCACCATGGT
GCAGCAGATAGAAAAAGTTCTCCAGCTTGCCAACCTCACATGGCGACAGC
TTTCTCATCTCCGTATATTTTATGCTGTCGATCAACTGGAAAACGAGCAG
TCGCTTCGGGAGGCCCTGGCCGCCGCCTTGCCTGACGAAGGACAGTGTGC
ACGGACGTTTCTTCCCGTGTCTTGCTTGGCCGCCACGGACGAAGAGGTTG
AAGGAATTACTTTATTGTTCAGGGTGCAAGCTGTGGCATTGGACTTGGAA
AAGCTGCGGACCGAGGCCTGGATTCATGATGTTCCCGATGGAGGCATTTA
GGGAGGTTGGGAGGTTGGCTGGGTTGGCATGTACCAAAAAAAGCCACGGA
AGGAATCCCTAAAAGAAATTCTATGCAAGATAC back to topprotein sequence of jgi.p|Nanoce1779_2|542681 >mRNA_5155-protein ID=mRNA_5155-protein|Name=jgi.p|Nanoce1779_2|542681|organism=Nannochloropsis oceanica|type=polypeptide|length=767bp
MFQSAGAAAIECLAECMDVPLVRAPMSGHSGHQGLHYTPTEGDEVEDLYS
LLARVQHQFPDVQAVASGAVLSTYQRTRVESVCERLGLRSLAFLWRYDQT
KLLQEMVEYGLEAVIVKVSSQGLSPHKHLGKSIAELRPLFARLHAQHGFH
VAGEGGEYETLTLNAPFFRKRLVLDETEVVIHADDVYTPVGLLHIHRCHI
EAKDVGEDIRGASTIAERNVRGRSRPRHIRPLPHIWRQGKQLNISGLCVP
TTRSQPSQTSKPHQRAADQMRHCLESLQAGLALHGLTLHDVVFVHLYLRS
MSSFAAINAVYCQMPFHALHPPSRSCVELPFPQPFDSEDGRGGRGGGGGV
EVLLDCMALAGSGAAMDTGRFQTRQVLHVKSLSGWAPLCIGPYSQANMLA
HGHLLFLAGAIGLAPSTMTLVTPPSLEASQALCNCAAVLHALRSSLRTAV
MVMVYVSVGMEGEREGGTGWSSAAVAEWKTMCRLDAGYQKADKDEDNSNT
KRNNSVSRSNCSSSDSDDEDEEDRFLETFPAPVFLPVGVPGLPRGAAIEF
EVMALSTAFAREQMLIKSTERGRPMPVRMEEKGGCCPFPLPFQPAATYQK
AGDEISSSSSSLSYAWEALHLPYVLSLLSLSLLIDDDQEDEEQETGVAAS
SCSCLLLDYSHVALTMVQQIEKVLQLANLTWRQLSHLRIFYAVDQLENEQ
SLREALAAALPDEGQCARTFLPVSCLAATDEEVEGITLLFRVQAVALDLE
KLRTEAWIHDVPDGGI* back to topmRNA from alignment at scaffold_12:596667..599139- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5155 ID=mRNA_5155|Name=jgi.p|Nanoce1779_2|542681|organism=Nannochloropsis oceanica|type=mRNA|length=2473bp|location=Sequence derived from alignment at scaffold_12:596667..599139- (Nannochloropsis oceanica)
ATGTTTCAGAGCGCGGGGGCGGCTGCGATCGAGTGCCTGGCGGAGTGTAT
GGACGTGCCTTTGGTACGAGCACCCATGTCGGGTCACAGCGGGCACCAAG
GCTTGCATTATACGCCTACAGAAGGAGACGAGGTGGAGGATCTGTATTCC
TTGCTTGCGCGTGTTCAACATCAATTTCCGGACGTGCAGGCCGTGGCAAG
TGGGGCGGTTCTATCGACCTATCAACGCACACGGGTGGAAAGCGTCTGTG
AACGGCTAGGCTTGCGGTCCCTAGCATTTCTCTGGCGATACGATCAAACA
AAATTATTACAGGAAATGGTTGAGTACGGTTTGGAAGCTGTTATAGTGAA
AGTCTCTTCTCAGGGGCTGTCTCCACACAAGCATTTGGGCAAGTCGATTG
CCGAGCTCCGGCCGCTTTTTGCACGACTGCATGCTCAACATGGATTTCAC
GTGGCAGGGGAGGGGGGGGAGTACGAGACGTTGACATTAAATGCGCCATT
TTTTAGGAAGAGATTGGTGTTGGACGAGACGGAGGTCGTGATTCACGCGG
ACGATGTGTATACGCCTGTCGGGTTGTTGCACATTCATCGGTGTCATATC
GAGGCTAAGGACGTTGGGGAGGACATTCGGGGTGCAGTGAGGAAGGTTGA
TGGCCTTTTGATATCTCCTGCAGGTGGACAGCGACTACAAGATCTATCGG
CTCAAGCCCACGCGAAGGAGGAGGAGAGCACTATCGCTGAAAGGAACGTC
AGGGGAAGATCACGGCCACGGCACATCCGGCCTCTGCCCCACATCTGGCG
GCAAGGAAAGCAACTTAATATCTCTGGCCTCTGCGTACCGACAACGCGAT
CCCAGCCATCACAAACAAGTAAACCTCATCAGCGAGCCGCCGATCAAATG
CGTCACTGTCTCGAATCCCTTCAAGCAGGCCTGGCCCTCCATGGACTCAC
CCTCCACGATGTCGTCTTCGTCCACCTCTATCTCCGCTCCATGTCCTCCT
TCGCCGCCATTAACGCCGTATATTGCCAAATGCCTTTCCACGCGTTACAT
CCTCCTTCCCGCTCATGCGTCGAACTCCCTTTTCCTCAACCCTTCGACAG
CGAAGACGGAAGAGGAGGCAGAGGAGGAGGAGGGGGAGTAGAAGTCCTCC
TCGATTGCATGGCGCTAGCCGGCTCAGGCGCCGCGATGGACACCGGACGA
TTTCAAACCCGTCAAGTACTGCACGTCAAGAGTCTCTCTGGATGGGCCCC
TCTCTGCATCGGTCCCTATAGCCAAGCGAATATGCTCGCGCACGGCCACC
TCCTCTTCCTAGCAGGAGCAATTGGACTTGCACCCTCAACCATGACCCTC
GTCACCCCTCCCTCCCTTGAGGCATCGCAGGCCCTCTGTAATTGTGCAGC
AGTCTTACATGCTCTTCGATCGTCGTTGCGGACGGCGGTAATGGTGATGG
TGTACGTGAGTGTGGGGATGGAAGGAGAGAGGGAGGGAGGAACGGGATGG
TCGTCGGCTGCGGTGGCGGAATGGAAGACCATGTGCCGCTTGGACGCCGG
CTATCAGAAAGCGGATAAAGACGAGGATAACAGCAACACAAAGAGAAACA
ACAGTGTCAGCCGCAGCAACTGTAGCAGCAGTGATAGTGATGACGAGGAT
GAGGAGGATAGGTTTCTCGAGACCTTCCCTGCGCCTGTCTTCCTCCCGGT
GGGTGTGCCTGGCCTGCCGCGTGGCGCAGCCATCGAGTTCGAAGTCATGG
CATTATCAACAGCGTTTGCGCGAGAACAGATGCTGATAAAAAGTACCGAG
CGGGGAAGGCCGATGCCAGTTAGAATGGAGGAGAAAGGTGGTTGTTGTCC
CTTTCCGTTGCCTTTTCAGCCCGCCGCTACTTATCAGAAAGCCGGCGACG
AGATCTCATCATCATCCTCTAGTCTTTCCTATGCCTGGGAAGCTCTTCAT
TTGCCTTATGTACTTAGCTTGCTCAGCCTCTCCCTTCTCATAGACGATGA
TCAGGAAGATGAGGAGCAAGAAACAGGAGTGGCTGCCTCCTCCTGCAGCT
GTCTCCTCTTAGACTACTCCCACGTCGCTCTCACCATGGTGCAGCAGATA
GAAAAAGTTCTCCAGCTTGCCAACCTCACATGGCGACAGCTTTCTCATCT
CCGTATATTTTATGCTGTCGATCAACTGGAAAACGAGCAGTCGCTTCGGG
AGGCCCTGGCCGCCGCCTTGCCTGACGAAGGACAGTGTGCACGGACGTTT
CTTCCCGTGTCTTGCTTGGCCGCCACGGACGAAGAGGTTGAAGGAATTAC
TTTATTGTTCAGGGTGCAAGCTGTGGCATTGGACTTGGAAAAGCTGCGGA
CCGAGGCCTGGATTCATGATGTTCCCGATGGAGGCATTTAGGGAGGTTGG
GAGGTTGGCTGGGTTGGCATGTACCAAAAAAAGCCACGGAAGGAATCCCT
AAAAGAAATTCTATGCAAGATAC back to topCoding sequence (CDS) from alignment at scaffold_12:596667..599139- >mRNA_5155 ID=mRNA_5155|Name=jgi.p|Nanoce1779_2|542681|organism=Nannochloropsis oceanica|type=CDS|length=4602bp|location=Sequence derived from alignment at scaffold_12:596667..599139- (Nannochloropsis oceanica)
AGCACTATCGCTGAAAGGAACGTCAGGGGAAGATCACGGCCACGGCACAT
CCGGCCTCTGCCCCACATCTGGCGGCAAGGAAAGCAACTTAATATCTCTG
GCCTCTGCGTACCGACAACGCGATCCCAGCCATCACAAACAAGTAAACCT
CATCAGCGAGCCGCCGATCAAATGCGTCACTGTCTCGAATCCCTTCAAGC
AGGCCTGGCCCTCCATGGACTCACCCTCCACGATGTCGTCTTCGTCCACC
TCTATCTCCGCTCCATGTCCTCCTTCGCCGCCATTAACGCCGTATATTGC
CAAATGCCTTTCCACGCGTTACATCCTCCTTCCCGCTCATGCGTCGAACT
CCCTTTTCCTCAACCCTTCGACAGCGAAGACGGAAGAGGAGGCAGAGGAG
GAGGAGGGGGAGTAGAAGTCCTCCTCGATTGCATGGCGCTAGCCGGCTCA
GGCGCCGCGATGGACACCGGACGATTTCAAACCCGTCAAGTACTGCACGT
CAAGAGTCTCTCTGGATGGGCCCCTCTCTGCATCGGTCCCTATAGCCAAG
CGAATATGCTCGCGCACGGCCACCTCCTCTTCCTAGCAGGAGCAATTGGA
CTTGCACCCTCAACCATGACCCTCGTCACCCCTCCCTCCCTTGAGGCATC
GCAGGCCCTCTGTAATTGTGCAGCAGTCTTACATGCTCTTCGATCGTCGT
TGCGGACGGCGGTAATGGTGATGGTGTACGTGAGTGTGGGGATGGAAGGA
GAGAGGGAGGGAGGAACGGGATGGTCGTCGGCTGCGGTGGCGGAATGGAA
GACCATGTGCCGCTTGGACGCCGGCTATCAGAAAGCGGATAAAGACGAGG
ATAACAGCAACACAAAGAGAAACAACAGTGTCAGCCGCAGCAACTGTAGC
AGCAGTGATAGTGATGACGAGGATGAGGAGGATAGGTTTCTCGAGACCTT
CCCTGCGCCTGTCTTCCTCCCGGTGGGTGTGCCTGGCCTGCCGCGTGGCG
CAGCCATCGAGTTCGAAGTCATGGCATTATCAACAGCGTTTGCGCGAGAA
CAGATGCTGATAAAAAGTACCGAGCGGGGAAGGCCGATGCCAGTTAGAAT
GGAGGAGAAAGGTGGTTGTTGTCCCTTTCCGTTGCCTTTTCAGCCCGCCG
CTACTTATCAGAAAGCCGGCGACGAGATCTCATCATCATCCTCTAGTCTT
TCCTATGCCTGGGAAGCTCTTCATTTGCCTTATGTACTTAGCTTGCTCAG
CCTCTCCCTTCTCATAGACGATGATCAGGAAGATGAGGAGCAAGAAACAG
GAGTGGCTGCCTCCTCCTGCAGCTGTCTCCTCTTAGACTACTCCCACGTC
GCTCTCACCATGGTGCAGCAGATAGAAAAAGTTCTCCAGCTTGCCAACCT
CACATGGCGACAGCTTTCTCATCTCCGTATATTTTATGCTGTCGATCAAC
TGGAAAACGAGCAGTCGCTTCGGGAGGCCCTGGCCGCCGCCTTGCCTGAC
GAAGGACAGTGTGCACGGACGTTTCTTCCCGTGTCTTGCTTGGCCGCCAC
GGACGAAGAGGTTGAAGGAATTACTTTATTGTTCAGGGTGCAAGCTGTGG
CATTGGACTTGGAAAAGCTGCGGACCGAGGCCTGGATTCATGATGTTCCC
GATGGAGGCATTTAGATGTTTCAGAGCGCGGGGGCGGCTGCGATCGAGTG
CCTGGCGGAGTGTATGGACGTGCCTTTGGTACGAGCACCCATGTCGGGTC
ACAGCGGGCACCAAGGCTTGCATTATACGCCTACAGAAGGAGACGAGGTG
GAGGATCTGTATTCCTTGCTTGCGCGTGTTCAACATCAATTTCCGGACGT
GCAGGCCGTGGCAAGTGGGGCGGTTCTATCGACCTATCAACGCACACGGG
TGGAAAGCGTCTGTGAACGGCTAGGCTTGCGGTCCCTAGCATTTCTCTGG
CGATACGATCAAACAAAATTATTACAGGAAATGGTTGAGTACGGTTTGGA
AGCTGTTATAGTGAAAGTCTCTTCTCAGGGGCTGTCTCCACACAAGCATT
TGGGCAAGTCGATTGCCGAGCTCCGGCCGCTTTTTGCACGACTGCATGCT
CAACATGGATTTCACGTGGCAGGGGAGGGGGGGGAGTACGAGACGTTGAC
ATTAAATGCGCCATTTTTTAGGAAGAGATTGGTGTTGGACGAGACGGAGG
TCGTGATTCACGCGGACGATGTGTATACGCCTGTCGGGTTGTTGCACATT
CATCGGTGTCATATCGAGGCTAAGGACGTTGGGGAGGACATTCGGGGTGC
AAGCACTATCGCTGAAAGGAACGTCAGGGGAAGATCACGGCCACGGCACA
TCCGGCCTCTGCCCCACATCTGGCGGCAAGGAAAGCAACTTAATATCTCT
GGCCTCTGCGTACCGACAACGCGATCCCAGCCATCACAAACAAGTAAACC
TCATCAGCGAGCCGCCGATCAAATGCGTCACTGTCTCGAATCCCTTCAAG
CAGGCCTGGCCCTCCATGGACTCACCCTCCACGATGTCGTCTTCGTCCAC
CTCTATCTCCGCTCCATGTCCTCCTTCGCCGCCATTAACGCCGTATATTG
CCAAATGCCTTTCCACGCGTTACATCCTCCTTCCCGCTCATGCGTCGAAC
TCCCTTTTCCTCAACCCTTCGACAGCGAAGACGGAAGAGGAGGCAGAGGA
GGAGGAGGGGGAGTAGAAGTCCTCCTCGATTGCATGGCGCTAGCCGGCTC
AGGCGCCGCGATGGACACCGGACGATTTCAAACCCGTCAAGTACTGCACG
TCAAGAGTCTCTCTGGATGGGCCCCTCTCTGCATCGGTCCCTATAGCCAA
GCGAATATGCTCGCGCACGGCCACCTCCTCTTCCTAGCAGGAGCAATTGG
ACTTGCACCCTCAACCATGACCCTCGTCACCCCTCCCTCCCTTGAGGCAT
CGCAGGCCCTCTGTAATTGTGCAGCAGTCTTACATGCTCTTCGATCGTCG
TTGCGGACGGCGGTAATGGTGATGGTGTACGTGAGTGTGGGGATGGAAGG
AGAGAGGGAGGGAGGAACGGGATGGTCGTCGGCTGCGGTGGCGGAATGGA
AGACCATGTGCCGCTTGGACGCCGGCTATCAGAAAGCGGATAAAGACGAG
GATAACAGCAACACAAAGAGAAACAACAGTGTCAGCCGCAGCAACTGTAG
CAGCAGTGATAGTGATGACGAGGATGAGGAGGATAGGTTTCTCGAGACCT
TCCCTGCGCCTGTCTTCCTCCCGGTGGGTGTGCCTGGCCTGCCGCGTGGC
GCAGCCATCGAGTTCGAAGTCATGGCATTATCAACAGCGTTTGCGCGAGA
ACAGATGCTGATAAAAAGTACCGAGCGGGGAAGGCCGATGCCAGTTAGAA
TGGAGGAGAAAGGTGGTTGTTGTCCCTTTCCGTTGCCTTTTCAGCCCGCC
GCTACTTATCAGAAAGCCGGCGACGAGATCTCATCATCATCCTCTAGTCT
TTCCTATGCCTGGGAAGCTCTTCATTTGCCTTATGTACTTAGCTTGCTCA
GCCTCTCCCTTCTCATAGACGATGATCAGGAAGATGAGGAGCAAGAAACA
GGAGTGGCTGCCTCCTCCTGCAGCTGTCTCCTCTTAGACTACTCCCACGT
CGCTCTCACCATGGTGCAGCAGATAGAAAAAGTTCTCCAGCTTGCCAACC
TCACATGGCGACAGCTTTCTCATCTCCGTATATTTTATGCTGTCGATCAA
CTGGAAAACGAGCAGTCGCTTCGGGAGGCCCTGGCCGCCGCCTTGCCTGA
CGAAGGACAGTGTGCACGGACGTTTCTTCCCGTGTCTTGCTTGGCCGCCA
CGGACGAAGAGGTTGAAGGAATTACTTTATTGTTCAGGGTGCAAGCTGTG
GCATTGGACTTGGAAAAGCTGCGGACCGAGGCCTGGATTCATGATGTTCC
CGATGGAGGCATTTAGATGTTTCAGAGCGCGGGGGCGGCTGCGATCGAGT
GCCTGGCGGAGTGTATGGACGTGCCTTTGGTACGAGCACCCATGTCGGGT
CACAGCGGGCACCAAGGCTTGCATTATACGCCTACAGAAGGAGACGAGGT
GGAGGATCTGTATTCCTTGCTTGCGCGTGTTCAACATCAATTTCCGGACG
TGCAGGCCGTGGCAAGTGGGGCGGTTCTATCGACCTATCAACGCACACGG
GTGGAAAGCGTCTGTGAACGGCTAGGCTTGCGGTCCCTAGCATTTCTCTG
GCGATACGATCAAACAAAATTATTACAGGAAATGGTTGAGTACGGTTTGG
AAGCTGTTATAGTGAAAGTCTCTTCTCAGGGGCTGTCTCCACACAAGCAT
TTGGGCAAGTCGATTGCCGAGCTCCGGCCGCTTTTTGCACGACTGCATGC
TCAACATGGATTTCACGTGGCAGGGGAGGGGGGGGAGTACGAGACGTTGA
CATTAAATGCGCCATTTTTTAGGAAGAGATTGGTGTTGGACGAGACGGAG
GTCGTGATTCACGCGGACGATGTGTATACGCCTGTCGGGTTGTTGCACAT
TCATCGGTGTCATATCGAGGCTAAGGACGTTGGGGAGGACATTCGGGGTG
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