jgi.p|Nanoce1779_2|556095, mRNA_5152 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556095
Unique Name	mRNA_5152
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1755
Alignment location	scaffold_12:590849..592987 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	556181
Track	FilteredModels2
ProteinId	556095

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:590849..592987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556095	gene_5152	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556095	mRNA_5152-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5152	CDS_5152	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:590849..592987+
coding sequence from alignment at scaffold_12:590849..592987+

mRNA sequence

>mRNA_5152 ID=mRNA_5152|Name=jgi.p|Nanoce1779_2|556095|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
AGACCATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCACCC
GCCACCACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTACAA
AAAGGTAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCACCC
CTCTTCCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGCAA
GCCCTTCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAGAA
GGGAGGCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCTGG
TGCAAGTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTGTG
CCTATTCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAGGA
GGAGCATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGTAA
AAAGGGCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGGGC
TTACAGGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAGCT
AAGGGATGCCTTCGATCTCTTCCTCGTCGATGACCGCATCCTCCCCCTCC
TGGGCAAGGCGCTGGGTAAAACATTTTTCTCCAAGAAGAAGCATCCAATA
TCTCTTAAAATCGGCGGCCTCCTCTCGAGCAATCCCTCCTCCATGGCCAC
CGTGGGCAAGCGTATCATCGCCGCGCAACAACGCACGCACCTCTACCGCA
ACCACGGGAACTGCCTGGCAATCAAAGTCGCCAAGACCTCCTTCCCTCCC
GCCTTCGTCCTCGCAAATGTCCTTGCCGGAATAGAAGGAGCGGTGGAAGC
CCTCCCTGGGAAATGGAAGAACGTTATGGCTATCTCTCTGAAGACAAGCG
CGTCTGTCGCCCTCCCTCTCTATCAGCGCCTCCCTCAGTACCTCGTTAAA
AAGCCGATTGAACCTCAGGAAGCAGTCATGCAGCATTTGAAAGAGAAGGA
AGAAGAGAAGGAGAACGAAATGAAGAAAAGAATGAAGATGATGAAGGAGG
GAGCTGCGGTGACGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGA
GGAGGGGGTAAGAAGCGTGCTGGACAAGGGGACGTGGTAGTGAGGGCAGA
GAAGCAGAACGAGGGGAAAGATATCACAAAAGTATCTGCAGCGAAGAGCA
CTACCAGCAGCAACAAAAAGGCCAAAATGGCTGGAACGGCTAATACTGCT
GCCGCAAAAGAGGAGGCAACAGCAGCAGAAACAACCGCCGCACGCGCGGG
CAAGAAGAAGAGGTCTCGCGATGATGGTGCTTCAGCAGCAGAAGCCGCAA
CTGTGTCGGCACCAGCAGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGAAT
GCTGCCGGCACTGCTGCAGGAGGCAATAAGAAGGGTGTTGTGGATGCTGC
GGCCAAGAGGGGCAAGCCACCCGCGGCGGAGAAAGGAGACGAGACGTCTC
AGAAGCAGAAGAGGGGAAAGGTCAAGGCTTGAATTGAAGTGCCAGAGTCT
AAAGGAGAGATAAAAACAAAATCGTGTCGCTTTCAAAGTGTGGTTTGGGG
ATGTGGCTTGTGAGTGAGCCGCTCAGAGTTTCCATGCGTGTGTGCATGTG
GTGTGTGAGAAGACACAGAAGACTGTCTCTGATTTATTTAGCCTGCCGAA
AACAAAATCATGGTGAAAGAAAAAGGGCAAGAAATAGAAAAGAAATCAGA
GGCCT

protein sequence of jgi.p|Nanoce1779_2|556095

>mRNA_5152-protein ID=mRNA_5152-protein|Name=jgi.p|Nanoce1779_2|556095|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MAAIGSNKRKKTSPPATTPPGTVTTSTTSSYKKVAKATSPRAATSTITPL
PPSRIDALQASKAVQALLQHYAKHQAAVASKKGGKQDLLASEAGDYVLVQ
VALAKIPERVSPKPVPIRLPHPLHGSGKDDEEEHAVCLIVKEDDKAKVKR
ALAVMKMEGVSEVVGLQELRTDYREFQERRKLRDAFDLFLVDDRILPLLG
KALGKTFFSKKKHPISLKIGGLLSSNPSSMATVGKRIIAAQQRTHLYRNH
GNCLAIKVAKTSFPPAFVLANVLAGIEGAVEALPGKWKNVMAISLKTSAS
VALPLYQRLPQYLVKKPIEPQEAVMQHLKEKEEEKENEMKKRMKMMKEGA
AVTAAAAAAGGGGGGGGGKKRAGQGDVVVRAEKQNEGKDITKVSAAKSTT
SSNKKAKMAGTANTAAAKEEATAAETTAARAGKKKRSRDDGASAAEAATV
SAPAAAVSGSSLKKNAAGTAAGGNKKGVVDAAAKRGKPPAAEKGDETSQK
QKRGKVKA*

mRNA from alignment at scaffold_12:590849..592987+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5152 ID=mRNA_5152|Name=jgi.p|Nanoce1779_2|556095|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_12:590849..592987+ (Nannochloropsis oceanica)
AGACCATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCACCC
GCCACCACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTACAA
AAAGGTAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCACCC
CTCTTCCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGCAA
GCCCTTCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAGAA
GGGAGGCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCTGG
TGCAAGTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTGTG
CCTATTCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAGGA
GGAGCATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGTAA
AAAGGGCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGGGC
TTACAGGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAGCT
AAGGGATGGTAAGTGATCGAACGGATATTTTGGGTATGGGAGGTTTTGAT
GGTCACGGGGCCTTGTCTGTCATTTTACCCGTGCGAACAGTGCACACACA
CATGAGTACATTTCTTGTTCTGTTTGGATCTTTCCCTGTTTTTGGTCCAT
CCTCCCTGAATCTTAATTCCCATTTCGAAAGGCGAAAGGCTCCCGCTGAT
GACTAGTACATGCACCACACCGAACCGCCCCTCGGGGCGGCCTGTGGACA
CTTGTTACTCCATAAATCACCAATTTATCTTGACTGAGGGAACCACATCT
CTATCAAAAAAAAAATCTCCCTCTTCTCGTCCGTCCTTCCCTCACAGCCT
CCATACTCTCCCTCCACTCCCCCCCCCCCCCTCAAAACACAGCCTTCGAT
CTCTTCCTCGTCGATGACCGCATCCTCCCCCTCCTGGGCAAGGCGCTGGG
TAAAACATTTTTCTCCAAGAAGAAGCATCCAATATCTCTTAAAATCGGCG
GCCTCCTCTCGAGCAATCCCTCCTCCATGGCCACCGTGGGCAAGCGTATC
ATCGCCGCGCAACAACGCACGCACCTCTACCGCAACCACGGGAACTGCCT
GGCAATCAAAGTCGCCAAGACCTCCTTCCCTCCCGCCTTCGTCCTCGCAA
ATGTCCTTGCCGGAATAGAAGGAGCGGTGGAAGCCCTCCCTGGGAAATGG
AAGAACGTTATGGCTATCTCTCTGAAGACAAGCGCGTCTGTCGCCCTCCC
TCTCTATCAGCGCCTCCCTCAGTACCTCGTTAAAAAGCCGATTGAACCTC
AGGAAGCAGTCATGCAGCATTTGAAAGAGAAGGAAGAAGAGAAGGAGAAC
GAAATGAAGAAAAGAATGAAGATGATGAAGGAGGGAGCTGCGGTGACGGC
AGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGGGGTAAGAAGC
GTGCTGGACAAGGGGACGTGGTAGTGAGGGCAGAGAAGCAGAACGAGGGG
AAAGATATCACAAAAGTATCTGCAGCGAAGAGCACTACCAGCAGCAACAA
AAAGGCCAAAATGGCTGGAACGGCTAATACTGCTGCCGCAAAAGAGGAGG
CAACAGCAGCAGAAACAACCGCCGCACGCGCGGGCAAGAAGAAGAGGTCT
CGCGATGATGGTGCTTCAGCAGCAGAAGCCGCAACTGTGTCGGCACCAGC
AGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGAATGCTGCCGGCACTGCTG
CAGGAGGCAATAAGAAGGGTGTTGTGGATGCTGCGGCCAAGAGGGGCAAG
CCACCCGCGGCGGAGAAAGGAGACGAGACGTCTCAGAAGCAGAAGAGGGG
AAAGGTCAAGGCTTGAATTGAAGTGCCAGAGTCTAAAGGAGAGATAAAAA
CAAAATCGTGTCGCTTTCAAAGTGTGGTTTGGGGATGTGGCTTGTGAGTG
AGCCGCTCAGAGTTTCCATGCGTGTGTGCATGTGGTGTGTGAGAAGACAC
AGAAGACTGTCTCTGATTTATTTAGCCTGCCGAAAACAAAATCATGGTGA
AAGAAAAAGGGCAAGAAATAGAAAAGAAATCAGAGGCCT

Coding sequence (CDS) from alignment at scaffold_12:590849..592987+

>mRNA_5152 ID=mRNA_5152|Name=jgi.p|Nanoce1779_2|556095|organism=Nannochloropsis oceanica|type=CDS|length=3054bp|location=Sequence derived from alignment at scaffold_12:590849..592987+ (Nannochloropsis oceanica)
ATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCACCCGCCAC
CACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTACAAAAAGG
TAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCACCCCTCTT
CCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGCAAGCCCT
TCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAGAAGGGAG
GCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCTGGTGCAA
GTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTGTGCCTAT
TCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAGGAGGAGC
ATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGTAAAAAGG
GCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGGGCTTACA
GGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAGCTAAGGG
ATGCCTTCGATCTCTTCCTCGTCGATGACCGCATCCTCCCCCTCCTGGGC
AAGGCGCTGGGTAAAACATTTTTCTCCAAGAAGAAGCATCCAATATCTCT
TAAAATCGGCGGCCTCCTCTCGAGCAATCCCTCCTCCATGGCCACCGTGG
GCAAGCGTATCATCGCCGCGCAACAACGCACGCACCTCTACCGCAACCAC
GGGAACTGCCTGGCAATCAAAGTCGCCAAGACCTCCTTCCCTCCCGCCTT
CGTCCTCGCAAATGTCCTTGCCGGAATAGAAGGAGCGGTGGAAGCCCTCC
CTGGGAAATGGAAGAACGTTATGGCTATCTCTCTGAAGACAAGCGCGTCT
GTCGCCCTCCCTCTCTATCAGCGCCTCCCTCAGTACCTCGTTAAAAAGCC
GATTGAACCTCAGGAAGCAGTCATGCAGCATTTGAAAGAGAAGGAAGAAG
AGAAGGAGAACGAAATGAAGAAAAGAATGAAGATGATGAAGGAGGGAGCT
GCGGTGACGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGG
GGGTAAGAAGCGTGCTGGACAAGGGGACGTGGTAGTGAGGGCAGAGAAGC
AGAACGAGGGGAAAGATATCACAAAAGTATCTGCAGCGAAGAGCACTACC
AGCAGCAACAAAAAGGCCAAAATGGCTGGAACGGCTAATACTGCTGCCGC
AAAAGAGGAGGCAACAGCAGCAGAAACAACCGCCGCACGCGCGGGCAAGA
AGAAGAGGTCTCGCGATGATGGTGCTTCAGCAGCAGAAGCCGCAACTGTG
TCGGCACCAGCAGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGAATGCTGC
CGGCACTGCTGCAGGAGGCAATAAGAAGGGTGTTGTGGATGCTGCGGCCA
AGAGGGGCAAGCCACCCGCGGCGGAGAAAGGAGACGAGACGTCTCAGAAG
CAGAAGAGGGGAAAGGTCAAGGCTTGAATGGCCGCCATCGGCAGCAACAA
GCGGAAGAAGACCTCCCCACCCGCCACCACCCCCCCAGGCACTGTGACCA
CCAGCACCACCAGCAGTTACAAAAAGGTAGCCAAGGCTACATCTCCCCGT
GCTGCCACATCCACTATCACCCCTCTTCCCCCCAGCCGTATCGATGCCTT
GCAAGCCAGTAAGGCCGTGCAAGCCCTTCTGCAACACTACGCCAAGCACC
AAGCGGCCGTCGCGAGCAAGAAGGGAGGCAAACAAGACCTGTTGGCATCC
GAGGCAGGAGACTACGTTCTGGTGCAAGTGGCATTAGCTAAGATACCCGA
GCGAGTAAGCCCCAAGCCTGTGCCTATTCGTTTGCCCCACCCTTTGCACG
GCAGTGGGAAGGACGACGAGGAGGAGCATGCGGTCTGTTTGATCGTCAAG
GAGGACGACAAGGCCAAAGTAAAAAGGGCGTTGGCAGTCATGAAGATGGA
GGGGGTGAGCGAGGTGGTGGGCTTACAGGAGCTCCGGACGGATTACAGAG
AATTCCAGGAGCGGAGGAAGCTAAGGGATGCCTTCGATCTCTTCCTCGTC
GATGACCGCATCCTCCCCCTCCTGGGCAAGGCGCTGGGTAAAACATTTTT
CTCCAAGAAGAAGCATCCAATATCTCTTAAAATCGGCGGCCTCCTCTCGA
GCAATCCCTCCTCCATGGCCACCGTGGGCAAGCGTATCATCGCCGCGCAA
CAACGCACGCACCTCTACCGCAACCACGGGAACTGCCTGGCAATCAAAGT
CGCCAAGACCTCCTTCCCTCCCGCCTTCGTCCTCGCAAATGTCCTTGCCG
GAATAGAAGGAGCGGTGGAAGCCCTCCCTGGGAAATGGAAGAACGTTATG
GCTATCTCTCTGAAGACAAGCGCGTCTGTCGCCCTCCCTCTCTATCAGCG
CCTCCCTCAGTACCTCGTTAAAAAGCCGATTGAACCTCAGGAAGCAGTCA
TGCAGCATTTGAAAGAGAAGGAAGAAGAGAAGGAGAACGAAATGAAGAAA
AGAATGAAGATGATGAAGGAGGGAGCTGCGGTGACGGCAGCAGCAGCAGC
AGCAGGAGGAGGAGGAGGAGGAGGAGGGGGTAAGAAGCGTGCTGGACAAG
GGGACGTGGTAGTGAGGGCAGAGAAGCAGAACGAGGGGAAAGATATCACA
AAAGTATCTGCAGCGAAGAGCACTACCAGCAGCAACAAAAAGGCCAAAAT
GGCTGGAACGGCTAATACTGCTGCCGCAAAAGAGGAGGCAACAGCAGCAG
AAACAACCGCCGCACGCGCGGGCAAGAAGAAGAGGTCTCGCGATGATGGT
GCTTCAGCAGCAGAAGCCGCAACTGTGTCGGCACCAGCAGCGGCAGTAAG
TGGAAGCAGCTTAAAAAAGAATGCTGCCGGCACTGCTGCAGGAGGCAATA
AGAAGGGTGTTGTGGATGCTGCGGCCAAGAGGGGCAAGCCACCCGCGGCG
GAGAAAGGAGACGAGACGTCTCAGAAGCAGAAGAGGGGAAAGGTCAAGGC
TTGA

Synonyms

Publications