jgi.p|Nanoce1779_2|591558, mRNA_5151 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591558
Unique NamemRNA_5151
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1119
Alignment locationscaffold_12:588642..590116 -

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Properties
Property NameValue
TranscriptId591644
TrackFilteredModels2
ProteinId591558
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:588642..590116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591558gene_5151Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591558mRNA_5151-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5151CDS_5151Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5151 ID=mRNA_5151|Name=jgi.p|Nanoce1779_2|591558|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
AGACCACCACCAATCTCAGCCCGCATCAACAATGGCCGGCCCCATCATGA
CCTCTGCGCCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAG
CAGCCTTTCAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTAC
CAAGCCCATCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATG
GTTACTCGACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTAAACCCC
TACCTGCTCATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTCCATGTG
CCTGCTCGTCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCCTGGGTG
TCGCTACGTCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTTGTGTTC
GGGTGGATCCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGTGGTGCC
CGCCTTGGACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCCTCCTCA
AGGAGTAAGAAAGATCCAAGAGAGACGAGTAGAGATTTTTTTTTTGGGAT
TGATGTTTGTCGTTCTTTGAGTTGTCGTCGAGTTACGCCTTTTGTAAGAA
TGTTCCGCAGGAGAGGAGGAGGATGGGCATGAGTGAGGGTGAGAGGGCTT
GCCCGCTTTTTTTTTTAAAAACGCTGAAGACGTGGTTGTCAAACAAACCC
CCCATAGAAACGATTTTGTTACGGTGCGGTCCAGACGTCACTTGAATGGC
TCCGCGGAAAGGCCAGGGAGGGAAGGGGGGAGGGAGGAAACATGAAACAT
GTTGAACGGCTCAACAGGGTTTGGGGGACAAGAGAGGTAGCGCCCTGATG
GACTGCTCCCTCCCCTCCTTTCCCTCAATGTCTCATTCATCCATGCTTCC
CCCTTCTCTCTCTCCCCTCCGTTCCATCCCCCGCGGGCGTGGTAGTGGCG
TGATGGGATCCACTAAAATGTACGTGTAAGAAAAGCCGGTGAGCTTACGC
TTTTGTGAAAGTGGGAGTACGAGTGTTGTGTGTGTGTGTAGTGGTTTCAG
ACCCCAGACAGAGGCGAAGCAGAAAAAGCAGACGATGAAGACGACGAAGA
AATGAGCAGTCTATTTTTA
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protein sequence of jgi.p|Nanoce1779_2|591558

>mRNA_5151-protein ID=mRNA_5151-protein|Name=jgi.p|Nanoce1779_2|591558|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKT
IDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFP
VTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKK
VAKFLLKE*
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mRNA from alignment at scaffold_12:588642..590116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5151 ID=mRNA_5151|Name=jgi.p|Nanoce1779_2|591558|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at scaffold_12:588642..590116- (Nannochloropsis oceanica)
AGACCACCACCAATCTCAGCCCGCATCAACAATGGCCGGCCCCATCATGA
CCTCTGCGCCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAG
CAGCCTTTCAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTAC
CAAGCCCATCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATG
GTTACTCGGTAAGTGCTGATTGTACAGGTGGAGTAAAGCGTGGTGATTGA
TATGGATCATAAGAACATGAGGAAATGCAGGCGACTGCAGGCTTCTGCTC
CGCAGATACGTGTGCCTTTCGACCTCTCGGTGCGCAATGCCAGCATCAGC
CTTGAAAAAAGGATTTGCTAGGATCTTTTTGTGCCATGCACCGGTGCACT
TTGAGGGCGTGCTAGCGGGTGCTCCGTGACAGCCCCCACCTGCCGGGATG
GAACATGAGAATTTTTCCTACAGAAACCTGAGAATTTCGAGATGCACTCC
AAAGCCCAACTCCTCTCATCATCATTTTGCTCTGCATTTATCGCTCTCCT
CTCTCGTGTGGCAGACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTA
AACCCCTACCTGCTCATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTC
CATGTGCCTGCTCGTCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCC
TGGGTGTCGCTACGTCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTT
GTGTTCGGGTGGATCCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGT
GGTGCCCGCCTTGGACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCC
TCCTCAAGGAGTAAGAAAGATCCAAGAGAGACGAGTAGAGATTTTTTTTT
TGGGATTGATGTTTGTCGTTCTTTGAGTTGTCGTCGAGTTACGCCTTTTG
TAAGAATGTTCCGCAGGAGAGGAGGAGGATGGGCATGAGTGAGGGTGAGA
GGGCTTGCCCGCTTTTTTTTTTAAAAACGCTGAAGACGTGGTTGTCAAAC
AAACCCCCCATAGAAACGATTTTGTTACGGTGCGGTCCAGACGTCACTTG
AATGGCTCCGCGGAAAGGCCAGGGAGGGAAGGGGGGAGGGAGGAAACATG
AAACATGTTGAACGGCTCAACAGGGTTTGGGGGACAAGAGAGGTAGCGCC
CTGATGGACTGCTCCCTCCCCTCCTTTCCCTCAATGTCTCATTCATCCAT
GCTTCCCCCTTCTCTCTCTCCCCTCCGTTCCATCCCCCGCGGGCGTGGTA
GTGGCGTGATGGGATCCACTAAAATGTACGTGTAAGAAAAGCCGGTGAGC
TTACGCTTTTGTGAAAGTGGGAGTACGAGTGTTGTGTGTGTGTGTAGTGG
TTTCAGACCCCAGACAGAGGCGAAGCAGAAAAAGCAGACGATGAAGACGA
CGAAGAAATGAGCAGTCTATTTTTA
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Coding sequence (CDS) from alignment at scaffold_12:588642..590116-

>mRNA_5151 ID=mRNA_5151|Name=jgi.p|Nanoce1779_2|591558|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_12:588642..590116- (Nannochloropsis oceanica)
ACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTAAACCCCTACCTGCT
CATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTCCATGTGCCTGCTCG
TCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCCTGGGTGTCGCTACG
TCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTTGTGTTCGGGTGGAT
CCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGTGGTGCCCGCCTTGG
ACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCCTCCTCAAGGAGTAA
ATGGCCGGCCCCATCATGACCTCTGCGCCCTCCGCGACCACGCCCACGGG
CAAGACAATGCCGTTCAAGCAGCCTTTCAAGACTGTGGCCACGCTGTCCG
CCAAGACTGGCAACATTACCAAGCCCATCGACCCTGCCATCTCCAAGACC
ATTGACTTCGTCTACAATGGTTACTCGACGGTCAAGACCAAGGTTGACAA
GGCCCCTAAGGTAAACCCCTACCTGCTCATTGCCGGCGGCCTCGTCCTCT
CGTGCATCATCTCCATGTGCCTGCTCGTCCCGGCCGTGATCTTCTTCCCC
GTCACCATCTTCCTGGGTGTCGCTACGTCGTTTGCGCTCATTGCATTGGC
CCCCGTGGCTTTTGTGTTCGGGTGGATCCTGATCTCCTCTGCTCCGATCC
AGGATAAGGTGGTGGTGCCCGCCTTGGACAAGGTGCTGGCCAATAAGAAG
GTGGCGAAGTTCCTCCTCAAGGAGTAAATGGCCGGCCCCATCATGACCTC
TGCGCCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAGCAGC
CTTTCAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTACCAAG
CCCATCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATGGTTA
CTCG
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Synonyms
Publications