jgi.p|Nanoce1779_2|577547, mRNA_515 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577547
Unique Name	mRNA_515
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1048
Alignment location	scaffold_3:1249770..1250817 -

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Properties


Property Name	Value
TranscriptId	577633
Track	FilteredModels2
ProteinId	577547

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1249770..1250817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577547	gene_515	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577547	mRNA_515-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_515	CDS_515	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1249770..1250817-
coding sequence from alignment at scaffold_3:1249770..1250817-

mRNA sequence

>mRNA_515 ID=mRNA_515|Name=jgi.p|Nanoce1779_2|577547|organism=Nannochloropsis oceanica|type=mRNA|length=1048bp
CAGGGAAGGTCAACAGTTGCCGTATCGAGCATTAGTACGGTATCATCCGA
TAGACGAATGGCCCAAACGTCAACCTGCCAGGCCTTGGATGCTGTCCGCA
CGCTGGCCACAGGACTCCGCAACAGTGGTAGCAACAGGCCGGCAGCCTTC
ACAATCGAGTGCTTGGATGCAGCAGAGGCATTGATCCAGGTGACTAGTCC
CCAAGGGGATGAACACGCCGCCCGCCTGGTCCTGCAATGGGCAGTGGCAG
TATTGAGGGGGAGAGGAGGTCAGCAGCAGCAGCAGCAGCAGCGGCAGCAG
CGGCAACAAGAACAAACCCCAAAGCAACGAGAACAAGTACCAGCCTTGGC
AGATGCGGCCAAGGAAGAGCGGGTGTGGCTAGTGTGTCGCTCGGCCGTGC
TTGTAACATCGTCATCCTCCCTGGCCGCCACCCTTCCCCTAACCTCGGCC
CTAGGCCTGCTACATGCTGTCGCTGCCACCGTCTTTTATCCCTCCACTTC
TACTCGCACAGCCACGGCTGCCGTCTTTTCATTCATTGCGTTAACGTCAA
GAGGACTTCCTCAAGTACCCGCGGAAAAAGTGCTGGACCTGGTAGCAGAA
GTGGTCGAGCAGCTCTATCGACACCATTACAATCACCATTTTCAACAACA
ACAACAACAACAACAACAACAACAACAAAAGTTAACACCATGCAACGAGT
TGGGCGCTGCCGCATTACACTTCCTAGTTAACGTTCAATCACAGCAAGGG
AATCAACGCAAGGCATTCAGTGTTCTAACGTCTCGCATTGTGCAGCCCTT
ACTGGCCCTACATCAGCAGCTACAGACACAGCCAAAAACATCGGAAGGAG
GTAGAGGGGTAGTGACGTTACGACGGGCCATTGACGCGGTGTTGGGAGAG
CTTTTGTTCCATCGAGAGCACGTAGAGGGACTTCGTGCTCTACTGGCGCC
TGGGGGAAAAAAGAGTGGTGGCAGCAGCAGCAGCAGTGGTGGTGACGGGA
GCGGGAGGAAAAAGCGACAACGTGTGGTAGCAGCAGCAACGGCAGCAG

protein sequence of jgi.p|Nanoce1779_2|577547

>mRNA_515-protein ID=mRNA_515-protein|Name=jgi.p|Nanoce1779_2|577547|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MGSGSIEGERRSAAAAAAAAAAATRTNPKATRTSTSLGRCGQGRAGVASV
SLGRACNIVILPGRHPSPNLGPRPATCCRCHRLLSLHFYSHSHGCRLFIH
CVNVKRTSSSTRGKSAGPGSRSGRAALSTPLQSPFSTTTTTTTTTTTKVN
TMQRVGRCRITLP

mRNA from alignment at scaffold_3:1249770..1250817-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_515 ID=mRNA_515|Name=jgi.p|Nanoce1779_2|577547|organism=Nannochloropsis oceanica|type=mRNA|length=1048bp|location=Sequence derived from alignment at scaffold_3:1249770..1250817- (Nannochloropsis oceanica)
CAGGGAAGGTCAACAGTTGCCGTATCGAGCATTAGTACGGTATCATCCGA
TAGACGAATGGCCCAAACGTCAACCTGCCAGGCCTTGGATGCTGTCCGCA
CGCTGGCCACAGGACTCCGCAACAGTGGTAGCAACAGGCCGGCAGCCTTC
ACAATCGAGTGCTTGGATGCAGCAGAGGCATTGATCCAGGTGACTAGTCC
CCAAGGGGATGAACACGCCGCCCGCCTGGTCCTGCAATGGGCAGTGGCAG
TATTGAGGGGGAGAGGAGGTCAGCAGCAGCAGCAGCAGCAGCGGCAGCAG
CGGCAACAAGAACAAACCCCAAAGCAACGAGAACAAGTACCAGCCTTGGC
AGATGCGGCCAAGGAAGAGCGGGTGTGGCTAGTGTGTCGCTCGGCCGTGC
TTGTAACATCGTCATCCTCCCTGGCCGCCACCCTTCCCCTAACCTCGGCC
CTAGGCCTGCTACATGCTGTCGCTGCCACCGTCTTTTATCCCTCCACTTC
TACTCGCACAGCCACGGCTGCCGTCTTTTCATTCATTGCGTTAACGTCAA
GAGGACTTCCTCAAGTACCCGCGGAAAAAGTGCTGGACCTGGTAGCAGAA
GTGGTCGAGCAGCTCTATCGACACCATTACAATCACCATTTTCAACAACA
ACAACAACAACAACAACAACAACAACAAAAGTTAACACCATGCAACGAGT
TGGGCGCTGCCGCATTACACTTCCTAGTTAACGTTCAATCACAGCAAGGG
AATCAACGCAAGGCATTCAGTGTTCTAACGTCTCGCATTGTGCAGCCCTT
ACTGGCCCTACATCAGCAGCTACAGACACAGCCAAAAACATCGGAAGGAG
GTAGAGGGGTAGTGACGTTACGACGGGCCATTGACGCGGTGTTGGGAGAG
CTTTTGTTCCATCGAGAGCACGTAGAGGGACTTCGTGCTCTACTGGCGCC
TGGGGGAAAAAAGAGTGGTGGCAGCAGCAGCAGCAGTGGTGGTGACGGGA
GCGGGAGGAAAAAGCGACAACGTGTGGTAGCAGCAGCAACGGCAGCAG

Coding sequence (CDS) from alignment at scaffold_3:1249770..1250817-

>mRNA_515 ID=mRNA_515|Name=jgi.p|Nanoce1779_2|577547|organism=Nannochloropsis oceanica|type=CDS|length=491bp|location=Sequence derived from alignment at scaffold_3:1249770..1250817- (Nannochloropsis oceanica)
ATGGGCAGTGGCAGTATTGAGGGGGAGAGGAGGTCAGCAGCAGCAGCAGC
AGCAGCGGCAGCAGCGGCAACAAGAACAAACCCCAAAGCAACGAGAACAA
GTACCAGCCTTGGCAGATGCGGCCAAGGAAGAGCGGGTGTGGCTAGTGTG
TCGCTCGGCCGTGCTTGTAACATCGTCATCCTCCCTGGCCGCCACCCTTC
CCCTAACCTCGGCCCTAGGCCTGCTACATGCTGTCGCTGCCACCGTCTTT
TATCCCTCCACTTCTACTCGCACAGCCACGGCTGCCGTCTTTTCATTCAT
TGCGTTAACGTCAAGAGGACTTCCTCAAGTACCCGCGGAAAAAGTGCTGG
ACCTGGTAGCAGAAGTGGTCGAGCAGCTCTATCGACACCATTACAATCAC
CATTTTCAACAACAACAACAACAACAACAACAACAACAACAAAAGTTAAC
ACCATGCAACGAGTTGGGCGCTGCCGCATTACACTTCCTAG

Synonyms

Publications