jgi.p|Nanoce1779_2|591546, mRNA_5149 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591546
Unique Name	mRNA_5149
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1721
Alignment location	scaffold_12:579519..581239 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591632
Track	FilteredModels2
ProteinId	591546

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:579519..581239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591546	gene_5149	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591546	mRNA_5149-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5149	CDS_5149	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:579519..581239+
coding sequence from alignment at scaffold_12:579519..581239+

mRNA sequence

>mRNA_5149 ID=mRNA_5149|Name=jgi.p|Nanoce1779_2|591546|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
AGCAGGAACTTTCGAAAGCATGCGGGCTTTTCAAGTCCCCCCACTACTCG
CCCTTCCCCTCTCCCTGGCAGTTTTCGTCGTTACCCTCCTCCCTAAAGCT
AGCAATGCCTTCGCCTTTCCCTCCACCATCCACGCGGTGCCCTTGCCTAC
CAGGCCGAGGTGAGTGAAAAGTCCTGAACGTCTCCTACGTCTTGAATATG
TGCGCAAATATGCATTTCCCATGTCACCTATGGTGTGTCTGGCTCCATAT
TTGCTCCAAGGACCTCAGACGCATTGCAATTCTTCGGCGTCACCCTTCTC
CTCCTGCCTCTTCCCTTTGGCCTCCGGAGGCTCGGTTTCTGATTCGACCT
CGACAATACCTCTTTGGAGAAGAGACATCCCATTCAAAGCACCCTCGTAG
TTTTCTCTTTTTCACACAAGGTCTTACTCGTCTCCATACCCACCCGCCCC
TCGCCTTCCATATGACAGCTATATCATCTCCCCGTCAGCTGCCACCGCAA
CAACGTCGACGAGCAGCACCTCCCGGCCAACCACCACAACCCTACACCCC
GTTCTCCATGCCCTCCACCAAACCGCCTCTCGCGCCGCTCCTCCCGGTTC
CACCCGCCGGTCTATCATCAAAAAAGTGGCTCGAGGCATGCTCGCCCTCG
GCGGCGGAGTAGGCACGGCTGCTACTGCTGCCAGTGCTGCAGGCGTTGCC
GCCCCGGACAAGACCCCTGGAAAATACAAGAATCTCGGCTCTGGTGGCAC
CAGCACTTTGGAGAGGGAGGATCAATTCAACGGCATCAGCAGCAGAAGCA
GTGATTCGGCCGATGAAAATGTGAAGAAGGAAGTACTGGACACGACCCGG
AAGTGGCTGGAGACTGTGACGTCCAACAAGCCTACCGCAGCAGTGGAAAC
GTCGGCCCTGTACGCGAAAGACGCTGTGTTGTGGGGGACTGTCTCGGAGC
AATTGAGAGTGACGCCAGGGGAAATTCGAAGCTACTTTGATTTCTTTGCG
GGTTTGCCGGGCTTGAGGGTGGCGGCATATCAGCCTTATGTCCGGGTGTG
GGGGAGCGACACGGCGATCAACGATGGGTATTATGTGTTTGCATGGCAAG
GGCCAGATGGAGTGGAGGTGCAGAAGCATGCGCGATTCTCGTTCGTTTAT
CGAAGGGAGGGGAGGAGGGAGGGCACATGGAAGATTGTGGATCATCATTC
GTCATTGTTGCCCACGGCGCCGGCGAAGCTGGTGAAGGCCACGACGGTGT
TATTGTAGATAGGTGTGAGCGGTAAGGGAGGGAGGAGCGTTGATGGATAA
TCAGTTTTGGGATTAGAAAGAGGGGGAAATGAAGCGAAATTTGGTGTTTT
TGAGTATTCGGTTAAGGTGTGTGCCTGTCTGTGGAGTGGAGAGGGAGGAG
GAGAGGGCATCTTTTCGAAAGGAGGACTAGGATATGGAACTTTTTGGGTT
CGATTGTACATTATCGATCATTTCTAAGATTGGTGCTTGATACGGTAAGA
GGAGGGCGGACGCTGCTCGCTCGGTGCTTCTGTGCGTAGTATTTTCACGC
TTCCCCGTCGCCCAGCCATCACAGCCCTGGCCTGCAGCCAAGATAGGGAG
AGTCTGCGATATAAAGCGTGGGCATATGTAGTATCATAGAACGAGCACCA
ACTTTGTGCGGATTCTCGTCACGAGCCTATGTATGAATACGTCGTAAAAA
AGAATCACTCATGTGAGACAA

protein sequence of jgi.p|Nanoce1779_2|591546

>mRNA_5149-protein ID=mRNA_5149-protein|Name=jgi.p|Nanoce1779_2|591546|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MLALGGGVGTAATAASAAGVAAPDKTPGKYKNLGSGGTSTLEREDQFNGI
SSRSSDSADENVKKEVLDTTRKWLETVTSNKPTAAVETSALYAKDAVLWG
TVSEQLRVTPGEIRSYFDFFAGLPGLRVAAYQPYVRVWGSDTAINDGYYV
FAWQGPDGVEVQKHARFSFVYRREGRREGTWKIVDHHSSLLPTAPAKLVK
ATTVLL*

mRNA from alignment at scaffold_12:579519..581239+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5149 ID=mRNA_5149|Name=jgi.p|Nanoce1779_2|591546|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp|location=Sequence derived from alignment at scaffold_12:579519..581239+ (Nannochloropsis oceanica)
AGCAGGAACTTTCGAAAGCATGCGGGCTTTTCAAGTCCCCCCACTACTCG
CCCTTCCCCTCTCCCTGGCAGTTTTCGTCGTTACCCTCCTCCCTAAAGCT
AGCAATGCCTTCGCCTTTCCCTCCACCATCCACGCGGTGCCCTTGCCTAC
CAGGCCGAGGTGAGTGAAAAGTCCTGAACGTCTCCTACGTCTTGAATATG
TGCGCAAATATGCATTTCCCATGTCACCTATGGTGTGTCTGGCTCCATAT
TTGCTCCAAGGACCTCAGACGCATTGCAATTCTTCGGCGTCACCCTTCTC
CTCCTGCCTCTTCCCTTTGGCCTCCGGAGGCTCGGTTTCTGATTCGACCT
CGACAATACCTCTTTGGAGAAGAGACATCCCATTCAAAGCACCCTCGTAG
TTTTCTCTTTTTCACACAAGGTCTTACTCGTCTCCATACCCACCCGCCCC
TCGCCTTCCATATGACAGCTATATCATCTCCCCGTCAGCTGCCACCGCAA
CAACGTCGACGAGCAGCACCTCCCGGCCAACCACCACAACCCTACACCCC
GTTCTCCATGCCCTCCACCAAACCGCCTCTCGCGCCGCTCCTCCCGGTTC
CACCCGCCGGTCTATCATCAAAAAAGTGGCTCGAGGCATGCTCGCCCTCG
GCGGCGGAGTAGGCACGGCTGCTACTGCTGCCAGTGCTGCAGGCGTTGCC
GCCCCGGACAAGACCCCTGGAAAATACAAGAATCTCGGCTCTGGTGGCAC
CAGCACTTTGGAGAGGGAGGATCAATTCAACGGCATCAGCAGCAGAAGCA
GTGATTCGGCCGATGAAAATGTGAAGAAGGAAGTACTGGACACGACCCGG
AAGTGGCTGGAGACTGTGACGTCCAACAAGCCTACCGCAGCAGTGGAAAC
GTCGGCCCTGTACGCGAAAGACGCTGTGTTGTGGGGGACTGTCTCGGAGC
AATTGAGAGTGACGCCAGGGGAAATTCGAAGCTACTTTGATTTCTTTGCG
GGTTTGCCGGGCTTGAGGGTGGCGGCATATCAGCCTTATGTCCGGGTGTG
GGGGAGCGACACGGCGATCAACGATGGGTATTATGTGTTTGCATGGCAAG
GGCCAGATGGAGTGGAGGTGCAGAAGCATGCGCGATTCTCGTTCGTTTAT
CGAAGGGAGGGGAGGAGGGAGGGCACATGGAAGATTGTGGATCATCATTC
GTCATTGTTGCCCACGGCGCCGGCGAAGCTGGTGAAGGCCACGACGGTGT
TATTGTAGATAGGTGTGAGCGGTAAGGGAGGGAGGAGCGTTGATGGATAA
TCAGTTTTGGGATTAGAAAGAGGGGGAAATGAAGCGAAATTTGGTGTTTT
TGAGTATTCGGTTAAGGTGTGTGCCTGTCTGTGGAGTGGAGAGGGAGGAG
GAGAGGGCATCTTTTCGAAAGGAGGACTAGGATATGGAACTTTTTGGGTT
CGATTGTACATTATCGATCATTTCTAAGATTGGTGCTTGATACGGTAAGA
GGAGGGCGGACGCTGCTCGCTCGGTGCTTCTGTGCGTAGTATTTTCACGC
TTCCCCGTCGCCCAGCCATCACAGCCCTGGCCTGCAGCCAAGATAGGGAG
AGTCTGCGATATAAAGCGTGGGCATATGTAGTATCATAGAACGAGCACCA
ACTTTGTGCGGATTCTCGTCACGAGCCTATGTATGAATACGTCGTAAAAA
AGAATCACTCATGTGAGACAA

Coding sequence (CDS) from alignment at scaffold_12:579519..581239+

>mRNA_5149 ID=mRNA_5149|Name=jgi.p|Nanoce1779_2|591546|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_12:579519..581239+ (Nannochloropsis oceanica)
ATGCTCGCCCTCGGCGGCGGAGTAGGCACGGCTGCTACTGCTGCCAGTGC
TGCAGGCGTTGCCGCCCCGGACAAGACCCCTGGAAAATACAAGAATCTCG
GCTCTGGTGGCACCAGCACTTTGGAGAGGGAGGATCAATTCAACGGCATC
AGCAGCAGAAGCAGTGATTCGGCCGATGAAAATGTGAAGAAGGAAGTACT
GGACACGACCCGGAAGTGGCTGGAGACTGTGACGTCCAACAAGCCTACCG
CAGCAGTGGAAACGTCGGCCCTGTACGCGAAAGACGCTGTGTTGTGGGGG
ACTGTCTCGGAGCAATTGAGAGTGACGCCAGGGGAAATTCGAAGCTACTT
TGATTTCTTTGCGGGTTTGCCGGGCTTGAGGGTGGCGGCATATCAGCCTT
ATGTCCGGGTGTGGGGGAGCGACACGGCGATCAACGATGGGTATTATGTG
TTTGCATGGCAAGGGCCAGATGGAGTGGAGGTGCAGAAGCATGCGCGATT
CTCGTTCGTTTATCGAAGGGAGGGGAGGAGGGAGGGCACATGGAAGATTG
TGGATCATCATTCGTCATTGTTGCCCACGGCGCCGGCGAAGCTGGTGAAG
GCCACGACGGTGTTATTGTAG

Synonyms

Publications