jgi.p|Nanoce1779_2|54852, mRNA_5147 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|54852
Unique NamemRNA_5147
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length976
Alignment locationscaffold_12:576177..577459 +

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Properties
Property NameValue
TranscriptId54938
TrackFilteredModels2
ProteinId54852
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:576177..577459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|54852gene_5147Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|54852mRNA_5147-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5147CDS_5147Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5147 ID=mRNA_5147|Name=jgi.p|Nanoce1779_2|54852|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
AATAAAATACCCTTTTGAACGGTAGCTACTGACATGAGGAGAAGGAGAGA
AGAAAAAAATCATCCACAACAAGAGAGGATACCCTTTTTAATAGCATGAG
TGCTTGTAGTAGAAGTAGATAATAATAGAAAAAGGATCGATCGAAGAAGA
GCGGAAGAGCGCGTCTTCCACTCGTCCCTTTTTTGGGGGGTGAGGGGAGG
TTTATTACGCCAGCACAACAACAAGTCAACCAGAGGGAAAGGAATAAAAA
CAAGAAATTTACATACTTGACGACTCTCTGCCTTCCGCTTTATCGTCTTA
AATTGTTATTTCGGCAATGGAAAATAGTAGCTCGAAGAAAAATGATCTCG
ATTGTGTGTCCTGAACGGCCGCCGCTGGTCATATGCAAAGTGGCAAAGTG
ATGACGACGCAGCTCCTCCCCATAAACCTATGGGTGAGGCACACGTATAT
TGCAGTCTTTGTAGGAGATACATGCCTACAGGTGGCGCATGGTCACGCCT
TTTTCCATCCTCCTACATACGACCACAGAAAGCAAGAAAGCAAGACCGCG
AGCGCTTCTTCCTTGCTTCCCCCTGTCTTGGCCCTACCCGAAGACAGGTG
TACGGCTACGGCAGGAGCCACACCCCTGCAATATTACCACATAATCAACA
TTTTTGGCGTCTCCGAGCAAGCAATGTCCGACGTCAAGTCCCTGTTTCGC
AAGAAGACCAAGCAAGCGGTCAAGGCCAAGGCTGAGCCCGTTAAGCTGAC
GGTCGAAGAGGAGGAAGACGATGAGTGGGGGGTGACCTCCAAGCCCACAG
AGCAGCTGTACATGGGAGATCGCAAGGCCGCGGAATTAATGTACGTAAAG
GCAGTGATTTGTTTGACGTCATACAAGTAAAGACGGGTATAAAGATTGAT
TAAGTGCACAGGTGGTACTCCCGCAAATCGTCCCAGTCGTCCATCCATTG
AACTGTCTGTAGTCTTCCTTTCTTTC
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protein sequence of jgi.p|Nanoce1779_2|54852

>mRNA_5147-protein ID=mRNA_5147-protein|Name=jgi.p|Nanoce1779_2|54852|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MQSGKVMTTQLLPINLWVRHTYIAVFVGDTCLQVAHGHAFFHPPTYDHRK
QESKTASASSLLPPVLALPEDRCTATAGATPLQYYHIINIFGVSEQAMSD
VKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDRKAA
ELMYVKAVICLTSYK*
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mRNA from alignment at scaffold_12:576177..577459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5147 ID=mRNA_5147|Name=jgi.p|Nanoce1779_2|54852|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp|location=Sequence derived from alignment at scaffold_12:576177..577459+ (Nannochloropsis oceanica)
AATAAAATACCCTTTTGAACGGTAGCTACTGACATGAGGAGAAGGAGAGA
AGAAAAAAATCATCCACAACAAGAGAGGATACCCTTTTTAATAGCATGAG
TGCTTGTAGTAGAAGTAGATAATAATAGAAAAAGGATCGATCGAAGAAGA
GCGGAAGAGCGCGTCTTCCACTCGTCCCTTTTTTGGGGGGTGAGGGGAGG
TTTATTACGCCAGCACAACAACAAGTCAACCAGAGGGAAAGGAATAAAAA
CAAGAAATTTACATACTTGACGACTCTCTGCCTTCCGCTTTATCGTCTTA
AATTGTTATTTCGGCAATGGAAAATAGTAGCTCGAAGAAAAATGATCTCG
ATTGTGTGTCCTGAACGGCCGCCGCTGGTCATATGCAAAGTGGCAAAGTG
ATGACGACGCAGCTCCTCCCCATAAACCTATGGGTGAGGCACACGTATAT
TGCAGTCTTTGTAGGAGATACATGCCTACAGGTGGCGCATGGTCACGCCT
TTTTCCATCCTCCTACATACGACCACAGAAAGCAAGAAAGCAAGACCGCG
AGCGCTTCTTCCTTGCTTCCCCCTGTCTTGGCCCTACCCGAAGACAGGTG
TACGGCTACGGCAGGAGCCACACCCCTGCAATATTACCACATAATCAACA
TTTTTGGCGTCTCCGAGCAAGCAATGTCCGACGTCAAGTCCCTGTTTCGC
AAGAAGACCAAGCAAGCGGTACGTATGTACCCTGTACTAGGGGGCCGTGG
AGTGCCGGGGCGGGGAGTCTACTCTGAGAGAGCAAGGCCAGCACATCCCC
GTCTTTCTCCATGTATCTGGCCGATGCGCTTCTCACGACCACTCTCAAGC
CCTTTACCGCCTTCCCATCCTCCCTATGTATACAGGTCAAGGCCAAGGCT
GAGCCCGTTAAGCTGTAAGTACATCTCCTTCTCTCCGCTTGCTCCCCTTT
CTCGCCTTTCTTTTTCCAACTTTGTTTGCTCGCCCTTGTTGCCTCTGTTT
CCTCCCATCCATATAGATCTCTTCCACTAACGCGCATATCTACTCTTCTC
ACAGGACGGTCGAAGAGGAGGAAGACGATGAGTGGGGGGTGACCTCCAAG
CCCACAGAGCAGCTGTACATGGGAGATCGCAAGGCCGCGGAATTAATGTA
CGTAAAGGCAGTGATTTGTTTGACGTCATACAAGTAAAGACGGGTATAAA
GATTGATTAAGTGCACAGGTGGTACTCCCGCAAATCGTCCCAGTCGTCCA
TCCATTGAACTGTCTGTAGTCTTCCTTTCTTTC
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Coding sequence (CDS) from alignment at scaffold_12:576177..577459+

>mRNA_5147 ID=mRNA_5147|Name=jgi.p|Nanoce1779_2|54852|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_12:576177..577459+ (Nannochloropsis oceanica)
ATGCAAAGTGGCAAAGTGATGACGACGCAGCTCCTCCCCATAAACCTATG
GGTGAGGCACACGTATATTGCAGTCTTTGTAGGAGATACATGCCTACAGG
TGGCGCATGGTCACGCCTTTTTCCATCCTCCTACATACGACCACAGAAAG
CAAGAAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCCCCTGTCTTGGC
CCTACCCGAAGACAGGTGTACGGCTACGGCAGGAGCCACACCCCTGCAAT
ATTACCACATAATCAACATTTTTGGCGTCTCCGAGCAAGCAATGTCCGAC
GTCAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTCAAGGCCAAGGC
TGAGCCCGTTAAGCTGACGGTCGAAGAGGAGGAAGACGATGAGTGGGGGG
TGACCTCCAAGCCCACAGAGCAGCTGTACATGGGAGATCGCAAGGCCGCG
GAATTAATGTACGTAAAGGCAGTGATTTGTTTGACGTCATACAAGTAAAT
GCAAAGTGGCAAAGTGATGACGACGCAGCTCCTCCCCATAAACCTATGGG
TGAGGCACACGTATATTGCAGTCTTTGTAGGAGATACATGCCTACAGGTG
GCGCATGGTCACGCCTTTTTCCATCCTCCTACATACGACCACAGAAAGCA
AGAAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCCCCTGTCTTGGCCC
TACCCGAAGACAGGTGTACGGCTACGGCAGGAGCCACACCCCTGCAATAT
TACCACATAATCAACATTTTTGGCGTCTCCGAGCAAGCAATGTCCGACGT
CAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTCAAGGCCAAGGCTG
AGCCCGTTAAGCTGACGGTCGAAGAGGAGGAAGACGATGAGTGGGGGGTG
ACCTCCAAGCCCACAGAGCAGCTGTACATGGGAGATCGCAAGGCCGCGGA
ATTAATGTACGTAAAGGCAGTGATTTGTTTGACGTCATACAAGTAAATGC
AAAGTGGCAAAGTGATGACGACGCAGCTCCTCCCCATAAACCTATGGGTG
AGGCACACGTATATTGCAGTCTTTGTAGGAGATACATGCCTACAGGTGGC
GCATGGTCACGCCTTTTTCCATCCTCCTACATACGACCACAGAAAGCAAG
AAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCCCCTGTCTTGGCCCTA
CCCGAAGACAGGTGTACGGCTACGGCAGGAGCCACACCCCTGCAATATTA
CCACATAATCAACATTTTTGGCGTCTCCGAGCAAGCAATGTCCGACGTCA
AGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTCAAGGCCAAGGCTGAG
CCCGTTAAGCTGACGGTCGAAGAGGAGGAAGACGATGAGTGGGGGGTGAC
CTCCAAGCCCACAGAGCAGCTGTACATGGGAGATCGCAAGGCCGCGGAAT
TAATGTACGTAAAGGCAGTGATTTGTTTGACGTCATACAAGTAA
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Synonyms
Publications