jgi.p|Nanoce1779_2|591534, mRNA_5145 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591534
Unique NamemRNA_5145
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1520
Alignment locationscaffold_12:571266..572785 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591620
TrackFilteredModels2
ProteinId591534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:571266..572785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591534gene_5145Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591534mRNA_5145-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5145CDS_5145Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5145 ID=mRNA_5145|Name=jgi.p|Nanoce1779_2|591534|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
CCAATGCGATCGACCTTGATGGCAGCGGCGGGGGGAAAGAGGAAGAAGAA
GGTGCTGATTCTGATGTCGGACACTGGGGGAGGGCACAGGGCATCGGCGC
AGGCCTTGGAAGCTGCGTTCAATGAGTTGTTCCCCAATCAGGTGGAGTGC
TCGACGGTTGACATTTGGACGGATTTCGCCCCATGGCCGTATAACCGTTT
CGTGCCGGCGTACCAGTTTATGGCGAAAAACCCCTTGTATTGGAAGGCAT
TTTGGGAGTACGGTAAGTTCCCACCGTCGAAATGGGGAACGGAGGAGTTG
AGTAATTTGGCGTGTCATCATCGGTTTAAGGATTGCATTGAGAGTCAGGA
CCCGGACTTGATCATAAGCGTGCATCCGCTCTGTCAAGATGTGCCGTTGC
GGGTGTTGAATACCATGGGGTCGGGTAGAAGACAGATTCCTTTTGTCACT
GTGGTGACTGACCTGGGGGGCGCGCATCCTACCTGGTTTCATAAGGAGGT
GGATTTGTGTTTTGTTCCTTCGGATCCAGTGCGGAAGATTGCCTTGAGTA
TGGGTCTTCAGAATGATCAGATTCGGCAACATGGCTTGCCGATTCGCCCG
GGCTTCTGGAGGGCAGGGAAGGATAAGGTGAGCTTGAGGAAGGAGCTTGG
TCTGTTGACAGGGGCAAGGACGGCTCTAGTTGTAGGGGGGGGGGATGGCA
TTGGAAACCTGCTGGAGATCACAGAAAATCTAGCGAAGTCTTTGTCGGCG
GCGGCGGCGGCAACGGGAGGACCAGGGGGCGAGGGAGGCAAGAAGAGTCA
GGTTGTCGTGGTATGTGGAAAGAACGAAGAGATGCGTCGGGATTTGGAGC
GTAAGGTGTGGCCGGAGAGTGTGAGTGTGGTGGTGAAGGGATTTGTGAAC
AATATGGACGCCTGGATGGGGGCGTCGGATTGTATCGTGACCAAAGCGGG
GCCGGGGACGATAGCGGAGGCGAGTACGAGGGGGCTGCCGGTTATGTTGT
TCAATTACTTGCCAGGGCAGGAGGAGGGGAATGTGCCTTTTGTGGTGGAC
AATGGGTTTGGGGACTACAAGAAGGACCCGAAGGCGATCGGTAAGGTGGT
GTCGGGGTGGATGATGAGCGAGGAGGTGAGAGGACGGTTGAGCAAAAAGG
CGTTGGAGGCAAGTAGGCCCAGCAGTACGACGGACATTGCGAAGGAGATC
GGGGATTTGCTGTTCGGTGACTGGCAGTTGCCACGGAGGAAGGATACGGA
GGATAAATTCAATGTCTTGCTGAAGAAATTGATGGAGCCGGTGACGATGT
AGGTGAAGAGTAGAGATGGAGGGAAGGAGGAAGGAGGGAAGAACTGTATA
GTTAGGTAGAAGAAGGCATGGACTGCTCAGAGAGGGTAGAGGGAGGAGTG
GGAGAAGAAGGGACAGTAAGTCTGAAGAAGAGGAGGTGGAGGAGGAGGAG
GAGGAGGATAAGGATATGATGAAATGTGTGTCGTGGTGGAACTTCACATG
CATACGGGGGACAAACAGTA
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protein sequence of jgi.p|Nanoce1779_2|591534

>mRNA_5145-protein ID=mRNA_5145-protein|Name=jgi.p|Nanoce1779_2|591534|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MRSTLMAAAGGKRKKKVLILMSDTGGGHRASAQALEAAFNELFPNQVECS
TVDIWTDFAPWPYNRFVPAYQFMAKNPLYWKAFWEYGKFPPSKWGTEELS
NLACHHRFKDCIESQDPDLIISVHPLCQDVPLRVLNTMGSGRRQIPFVTV
VTDLGGAHPTWFHKEVDLCFVPSDPVRKIALSMGLQNDQIRQHGLPIRPG
FWRAGKDKVSLRKELGLLTGARTALVVGGGDGIGNLLEITENLAKSLSAA
AAATGGPGGEGGKKSQVVVVCGKNEEMRRDLERKVWPESVSVVVKGFVNN
MDAWMGASDCIVTKAGPGTIAEASTRGLPVMLFNYLPGQEEGNVPFVVDN
GFGDYKKDPKAIGKVVSGWMMSEEVRGRLSKKALEASRPSSTTDIAKEIG
DLLFGDWQLPRRKDTEDKFNVLLKKLMEPVTM*
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mRNA from alignment at scaffold_12:571266..572785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5145 ID=mRNA_5145|Name=jgi.p|Nanoce1779_2|591534|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at scaffold_12:571266..572785+ (Nannochloropsis oceanica)
CCAATGCGATCGACCTTGATGGCAGCGGCGGGGGGAAAGAGGAAGAAGAA
GGTGCTGATTCTGATGTCGGACACTGGGGGAGGGCACAGGGCATCGGCGC
AGGCCTTGGAAGCTGCGTTCAATGAGTTGTTCCCCAATCAGGTGGAGTGC
TCGACGGTTGACATTTGGACGGATTTCGCCCCATGGCCGTATAACCGTTT
CGTGCCGGCGTACCAGTTTATGGCGAAAAACCCCTTGTATTGGAAGGCAT
TTTGGGAGTACGGTAAGTTCCCACCGTCGAAATGGGGAACGGAGGAGTTG
AGTAATTTGGCGTGTCATCATCGGTTTAAGGATTGCATTGAGAGTCAGGA
CCCGGACTTGATCATAAGCGTGCATCCGCTCTGTCAAGATGTGCCGTTGC
GGGTGTTGAATACCATGGGGTCGGGTAGAAGACAGATTCCTTTTGTCACT
GTGGTGACTGACCTGGGGGGCGCGCATCCTACCTGGTTTCATAAGGAGGT
GGATTTGTGTTTTGTTCCTTCGGATCCAGTGCGGAAGATTGCCTTGAGTA
TGGGTCTTCAGAATGATCAGATTCGGCAACATGGCTTGCCGATTCGCCCG
GGCTTCTGGAGGGCAGGGAAGGATAAGGTGAGCTTGAGGAAGGAGCTTGG
TCTGTTGACAGGGGCAAGGACGGCTCTAGTTGTAGGGGGGGGGGATGGCA
TTGGAAACCTGCTGGAGATCACAGAAAATCTAGCGAAGTCTTTGTCGGCG
GCGGCGGCGGCAACGGGAGGACCAGGGGGCGAGGGAGGCAAGAAGAGTCA
GGTTGTCGTGGTATGTGGAAAGAACGAAGAGATGCGTCGGGATTTGGAGC
GTAAGGTGTGGCCGGAGAGTGTGAGTGTGGTGGTGAAGGGATTTGTGAAC
AATATGGACGCCTGGATGGGGGCGTCGGATTGTATCGTGACCAAAGCGGG
GCCGGGGACGATAGCGGAGGCGAGTACGAGGGGGCTGCCGGTTATGTTGT
TCAATTACTTGCCAGGGCAGGAGGAGGGGAATGTGCCTTTTGTGGTGGAC
AATGGGTTTGGGGACTACAAGAAGGACCCGAAGGCGATCGGTAAGGTGGT
GTCGGGGTGGATGATGAGCGAGGAGGTGAGAGGACGGTTGAGCAAAAAGG
CGTTGGAGGCAAGTAGGCCCAGCAGTACGACGGACATTGCGAAGGAGATC
GGGGATTTGCTGTTCGGTGACTGGCAGTTGCCACGGAGGAAGGATACGGA
GGATAAATTCAATGTCTTGCTGAAGAAATTGATGGAGCCGGTGACGATGT
AGGTGAAGAGTAGAGATGGAGGGAAGGAGGAAGGAGGGAAGAACTGTATA
GTTAGGTAGAAGAAGGCATGGACTGCTCAGAGAGGGTAGAGGGAGGAGTG
GGAGAAGAAGGGACAGTAAGTCTGAAGAAGAGGAGGTGGAGGAGGAGGAG
GAGGAGGATAAGGATATGATGAAATGTGTGTCGTGGTGGAACTTCACATG
CATACGGGGGACAAACAGTA
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Coding sequence (CDS) from alignment at scaffold_12:571266..572785+

>mRNA_5145 ID=mRNA_5145|Name=jgi.p|Nanoce1779_2|591534|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_12:571266..572785+ (Nannochloropsis oceanica)
ATGCGATCGACCTTGATGGCAGCGGCGGGGGGAAAGAGGAAGAAGAAGGT
GCTGATTCTGATGTCGGACACTGGGGGAGGGCACAGGGCATCGGCGCAGG
CCTTGGAAGCTGCGTTCAATGAGTTGTTCCCCAATCAGGTGGAGTGCTCG
ACGGTTGACATTTGGACGGATTTCGCCCCATGGCCGTATAACCGTTTCGT
GCCGGCGTACCAGTTTATGGCGAAAAACCCCTTGTATTGGAAGGCATTTT
GGGAGTACGGTAAGTTCCCACCGTCGAAATGGGGAACGGAGGAGTTGAGT
AATTTGGCGTGTCATCATCGGTTTAAGGATTGCATTGAGAGTCAGGACCC
GGACTTGATCATAAGCGTGCATCCGCTCTGTCAAGATGTGCCGTTGCGGG
TGTTGAATACCATGGGGTCGGGTAGAAGACAGATTCCTTTTGTCACTGTG
GTGACTGACCTGGGGGGCGCGCATCCTACCTGGTTTCATAAGGAGGTGGA
TTTGTGTTTTGTTCCTTCGGATCCAGTGCGGAAGATTGCCTTGAGTATGG
GTCTTCAGAATGATCAGATTCGGCAACATGGCTTGCCGATTCGCCCGGGC
TTCTGGAGGGCAGGGAAGGATAAGGTGAGCTTGAGGAAGGAGCTTGGTCT
GTTGACAGGGGCAAGGACGGCTCTAGTTGTAGGGGGGGGGGATGGCATTG
GAAACCTGCTGGAGATCACAGAAAATCTAGCGAAGTCTTTGTCGGCGGCG
GCGGCGGCAACGGGAGGACCAGGGGGCGAGGGAGGCAAGAAGAGTCAGGT
TGTCGTGGTATGTGGAAAGAACGAAGAGATGCGTCGGGATTTGGAGCGTA
AGGTGTGGCCGGAGAGTGTGAGTGTGGTGGTGAAGGGATTTGTGAACAAT
ATGGACGCCTGGATGGGGGCGTCGGATTGTATCGTGACCAAAGCGGGGCC
GGGGACGATAGCGGAGGCGAGTACGAGGGGGCTGCCGGTTATGTTGTTCA
ATTACTTGCCAGGGCAGGAGGAGGGGAATGTGCCTTTTGTGGTGGACAAT
GGGTTTGGGGACTACAAGAAGGACCCGAAGGCGATCGGTAAGGTGGTGTC
GGGGTGGATGATGAGCGAGGAGGTGAGAGGACGGTTGAGCAAAAAGGCGT
TGGAGGCAAGTAGGCCCAGCAGTACGACGGACATTGCGAAGGAGATCGGG
GATTTGCTGTTCGGTGACTGGCAGTTGCCACGGAGGAAGGATACGGAGGA
TAAATTCAATGTCTTGCTGAAGAAATTGATGGAGCCGGTGACGATGTAG
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Synonyms
Publications