jgi.p|Nanoce1779_2|591533, mRNA_5144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591533
Unique NamemRNA_5144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length798
Alignment locationscaffold_12:570468..571265 -

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Properties
Property NameValue
TranscriptId591619
TrackFilteredModels2
ProteinId591533
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:570468..571265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591533gene_5144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591533mRNA_5144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5144CDS_5144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5144 ID=mRNA_5144|Name=jgi.p|Nanoce1779_2|591533|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
CTCCCCTCGTATCCCCCCCCCGTCCAACGCCACCTCTATCCCCTTGATAT
CAGTCGGAATCCCAGGAGGCAAAAAAGATAATATCCCTCCCTCCTGCGCC
AAGGTCCCACCAAAGGCCCACGCTGCATACGAAGATGAAAAAGTAGTAAG
TGTGTTCGAAGGGGCTGCTGCTGCCCCTCCTCTTCCTGCTTTATTACCGC
CTACTCCTCCACGACGAAAGGCTGAGAGAAGGCCACGCCACCCGCCCTTG
GCACTTCCCTCTGCCCCGGATGAGGCCGCCGCATTGCAGGCCAACGACCG
CGCGCTGCTCATCCGTCTAATTCCTCCGCTGTTATGATGGTACAGACTGC
TGCAGCTACTCAAAATGCTCGCGACCGGTACCGAAGAGGAAGCCGCCCCC
AAGGCGGCTGCTGTTGCCGTGGCTGCTGCGGCGGCTGCTGCGCTGTTTCT
GGGCAAAAGGGCAAAGCCACTACTTTTCATCAAGAGCCGGTTCGCGGCAA
CCCATTGCGGACCTCCTGGTGGCGGTGCAACAAACGGATTGTGCGCAGTG
GTACGGAACTTAAGGCCAAAAACAGCGGCGGTAGGGAGCAGGAGGAGCAG
GACTAAGGGCAAGACATGCCGCATTATTCTGTTTCTTGACGTGAACCCCA
TGTTGGGCATTATCTTTTTCCTACTACTGTGCTTGCAACCTTGAAAATGG
CACTCACTATCGCCGTCGTGCTATCTTTATGTGCTGGGTGGGTGGCGAAG
GCGTAAAAAGCAAGGCAACCAACCCAAGCCCGCCCTCCTTGATCCTGT
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protein sequence of jgi.p|Nanoce1779_2|591533

>mRNA_5144-protein ID=mRNA_5144-protein|Name=jgi.p|Nanoce1779_2|591533|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MLATGTEEEAAPKAAAVAVAAAAAAALFLGKRAKPLLFIKSRFAATHCGP
PGGGATNGLCAVVRNLRPKTAAVGSRRSRTKGKTCRIILFLDVNPMLGII
FFLLLCLQP*
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mRNA from alignment at scaffold_12:570468..571265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5144 ID=mRNA_5144|Name=jgi.p|Nanoce1779_2|591533|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at scaffold_12:570468..571265- (Nannochloropsis oceanica)
CTCCCCTCGTATCCCCCCCCCGTCCAACGCCACCTCTATCCCCTTGATAT
CAGTCGGAATCCCAGGAGGCAAAAAAGATAATATCCCTCCCTCCTGCGCC
AAGGTCCCACCAAAGGCCCACGCTGCATACGAAGATGAAAAAGTAGTAAG
TGTGTTCGAAGGGGCTGCTGCTGCCCCTCCTCTTCCTGCTTTATTACCGC
CTACTCCTCCACGACGAAAGGCTGAGAGAAGGCCACGCCACCCGCCCTTG
GCACTTCCCTCTGCCCCGGATGAGGCCGCCGCATTGCAGGCCAACGACCG
CGCGCTGCTCATCCGTCTAATTCCTCCGCTGTTATGATGGTACAGACTGC
TGCAGCTACTCAAAATGCTCGCGACCGGTACCGAAGAGGAAGCCGCCCCC
AAGGCGGCTGCTGTTGCCGTGGCTGCTGCGGCGGCTGCTGCGCTGTTTCT
GGGCAAAAGGGCAAAGCCACTACTTTTCATCAAGAGCCGGTTCGCGGCAA
CCCATTGCGGACCTCCTGGTGGCGGTGCAACAAACGGATTGTGCGCAGTG
GTACGGAACTTAAGGCCAAAAACAGCGGCGGTAGGGAGCAGGAGGAGCAG
GACTAAGGGCAAGACATGCCGCATTATTCTGTTTCTTGACGTGAACCCCA
TGTTGGGCATTATCTTTTTCCTACTACTGTGCTTGCAACCTTGAAAATGG
CACTCACTATCGCCGTCGTGCTATCTTTATGTGCTGGGTGGGTGGCGAAG
GCGTAAAAAGCAAGGCAACCAACCCAAGCCCGCCCTCCTTGATCCTGT
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Coding sequence (CDS) from alignment at scaffold_12:570468..571265-

>mRNA_5144 ID=mRNA_5144|Name=jgi.p|Nanoce1779_2|591533|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_12:570468..571265- (Nannochloropsis oceanica)
ATGCTCGCGACCGGTACCGAAGAGGAAGCCGCCCCCAAGGCGGCTGCTGT
TGCCGTGGCTGCTGCGGCGGCTGCTGCGCTGTTTCTGGGCAAAAGGGCAA
AGCCACTACTTTTCATCAAGAGCCGGTTCGCGGCAACCCATTGCGGACCT
CCTGGTGGCGGTGCAACAAACGGATTGTGCGCAGTGGTACGGAACTTAAG
GCCAAAAACAGCGGCGGTAGGGAGCAGGAGGAGCAGGACTAAGGGCAAGA
CATGCCGCATTATTCTGTTTCTTGACGTGAACCCCATGTTGGGCATTATC
TTTTTCCTACTACTGTGCTTGCAACCTTGA
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Synonyms
Publications