jgi.p|Nanoce1779_2|566398, mRNA_5143 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566398
Unique NamemRNA_5143
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length690
Alignment locationscaffold_12:567541..568666 +

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Properties
Property NameValue
TranscriptId566484
TrackFilteredModels2
ProteinId566398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:567541..568666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566398gene_5143Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566398mRNA_5143-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5143CDS_5143Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5143 ID=mRNA_5143|Name=jgi.p|Nanoce1779_2|566398|organism=Nannochloropsis oceanica|type=mRNA|length=690bp
ATGCCCAGTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGA
GGAGGAGGAAGAAGAGGAAGAGGACGAAGCGCTGCCGCAAGCTCTGCTTA
GCGCCGAAGGCCGCTTGGTAGGTTTCCAAGCCCGCGAACAAGCGTACCTT
CGCATCCTCACAGAGAAAGAAAAGGAGACGGCCGATTTGAAAAGGCATCT
GCGAGAACTTGCCGTCTTCCAGAGTCCTCCCGAGGCTTGGGCACGTACAG
CCCTCGTCGACCCCGGGGTAGGCATGGAGCTTCGCTTGCTACGCGATAAA
ATCTCTGAATTGGAACGTTCGGAGAAAATTCTGAAAGAAGACGCTCAAGC
CCATCATTTCTCCACGGAAAGCGCAACGGGCGAGGCCCTCCTAAACAAGT
GTCGAAAACTCCAGCAGGAAAACGAGGTTTTGGCCATGCGCTTGGAGAAA
GAGGGGGGAAAGGAGGGAGGGCGGGAGGAGGAGTTAAAGCTGCAAATAGT
GGACTTGCAGAAGGCATTAGAGGAGAGTCAGGCACGGGTCGAGGACTTGG
ATGAGGAGAGAGGGCTGTTGAGCACGATGTTGTACGCATTGAAGAAGCAA
TTAATGGCGGCCACGTCGACGTCTGCTTTGATGGTAGGAGGGGAAGAAGG
GGGAGGGGACGGAAAGGGGATGGAGGTTGAGACGGGGTGA
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protein sequence of jgi.p|Nanoce1779_2|566398

>mRNA_5143-protein ID=mRNA_5143-protein|Name=jgi.p|Nanoce1779_2|566398|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MPSGKKAAVLTAFGCREEEEEEEEDEALPQALLSAEGRLVGFQAREQAYL
RILTEKEKETADLKRHLRELAVFQSPPEAWARTALVDPGVGMELRLLRDK
ISELERSEKILKEDAQAHHFSTESATGEALLNKCRKLQQENEVLAMRLEK
EGGKEGGREEELKLQIVDLQKALEESQARVEDLDEERGLLSTMLYALKKQ
LMAATSTSALMVGGEEGGGDGKGMEVETG*
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mRNA from alignment at scaffold_12:567541..568666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5143 ID=mRNA_5143|Name=jgi.p|Nanoce1779_2|566398|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp|location=Sequence derived from alignment at scaffold_12:567541..568666+ (Nannochloropsis oceanica)
ATGCCCAGTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGA
GGAGGAGGAAGAAGAGGAAGAGGACGAAGCGCTGCCGGTACGTACATTGG
CGTAATGTCATCGAGGCGTTGAAGGGAGTGCATGAGGATGCGTGAAATGA
GGCCCGGCCGGGACCTTGTCCCTCTGTGTCACCAACCAAAATGCTTCCGA
AGCTCACCTTTCTTCAAATGGAGAGAATGGCATTTCTTACGCTGATCGGC
AAGGAGCTCCACCCCAAGGAGCTCCCCTAGCTAGTGCTTCCCCTACTCAC
ACCATCCGCTTCCCTTTCCCTCCTTCATTCCTCCCAACCCCCACTGCCAC
AAAATGTACAGGAAGTCTACGTCAAGAACGCCACATCCTCCGACCCAGAT
ACCAAACCCATCCTCTCTCAACCCAGCACAAGCAGCAGCATCTCGTCAAA
GAGCAGCAAGAAAGGCAGAGCAACAGTCCTCCCCTCTCCTCCCTCCCTCC
CTACCGACGTCCCCGCCTTGCAGCAAGCTCTGCTTAGCGCCGAAGGCCGC
TTGGTAGGTTTCCAAGCCCGCGAACAAGCGTACCTTCGCATCCTCACAGA
GAAAGAAAAGGAGACGGCCGATTTGAAAAGGCATCTGCGAGAACTTGCCG
TCTTCCAGAGTCCTCCCGAGGCTTGGGCACGTACAGCCCTCGTCGACCCC
GGGGTAGGCATGGAGCTTCGCTTGCTACGCGATAAAATCTCTGAATTGGA
ACGTTCGGAGAAAATTCTGAAAGAAGACGCTCAAGCCCATCATTTCTCCA
CGGAAAGCGCAACGGGCGAGGCCCTCCTAAACAAGTGTCGAAAACTCCAG
CAGGAAAACGAGGTTTTGGCCATGCGCTTGGAGAAAGAGGGGGGAAAGGA
GGGAGGGCGGGAGGAGGAGTTAAAGCTGCAAATAGTGGACTTGCAGAAGG
CATTAGAGGAGAGTCAGGCACGGGTCGAGGACTTGGATGAGGAGAGAGGG
CTGTTGAGCACGATGTTGTACGCATTGAAGAAGCAATTAATGGCGGCCAC
GTCGACGTCTGCTTTGATGGTAGGAGGGGAAGAAGGGGGAGGGGACGGAA
AGGGGATGGAGGTTGAGACGGGGTGA
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Coding sequence (CDS) from alignment at scaffold_12:567541..568666+

>mRNA_5143 ID=mRNA_5143|Name=jgi.p|Nanoce1779_2|566398|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_12:567541..568666+ (Nannochloropsis oceanica)
ATGCCCAGTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGA
GGAGGAGGAAGAAGAGGAAGAGGACGAAGCGCTGCCGCAAGCTCTGCTTA
GCGCCGAAGGCCGCTTGGTAGGTTTCCAAGCCCGCGAACAAGCGTACCTT
CGCATCCTCACAGAGAAAGAAAAGGAGACGGCCGATTTGAAAAGGCATCT
GCGAGAACTTGCCGTCTTCCAGAGTCCTCCCGAGGCTTGGGCACGTACAG
CCCTCGTCGACCCCGGGGTAGGCATGGAGCTTCGCTTGCTACGCGATAAA
ATCTCTGAATTGGAACGTTCGGAGAAAATTCTGAAAGAAGACGCTCAAGC
CCATCATTTCTCCACGGAAAGCGCAACGGGCGAGGCCCTCCTAAACAAGT
GTCGAAAACTCCAGCAGGAAAACGAGGTTTTGGCCATGCGCTTGGAGAAA
GAGGGGGGAAAGGAGGGAGGGCGGGAGGAGGAGTTAAAGCTGCAAATAGT
GGACTTGCAGAAGGCATTAGAGGAGAGTCAGGCACGGGTCGAGGACTTGG
ATGAGGAGAGAGGGCTGTTGAGCACGATGTTGTACGCATTGAAGAAGCAA
TTAATGGCGGCCACGTCGACGTCTGCTTTGATGGTAGGAGGGGAAGAAGG
GGGAGGGGACGGAAAGGGGATGGAGGTTGAGACGGGGTGAATGCCCAGTG
GCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGAGGAGGAGGAA
GAAGAGGAAGAGGACGAAGCGCTGCCGCAAGCTCTGCTTAGCGCCGAAGG
CCGCTTGGTAGGTTTCCAAGCCCGCGAACAAGCGTACCTTCGCATCCTCA
CAGAGAAAGAAAAGGAGACGGCCGATTTGAAAAGGCATCTGCGAGAACTT
GCCGTCTTCCAGAGTCCTCCCGAGGCTTGGGCACGTACAGCCCTCGTCGA
CCCCGGGGTAGGCATGGAGCTTCGCTTGCTACGCGATAAAATCTCTGAAT
TGGAACGTTCGGAGAAAATTCTGAAAGAAGACGCTCAAGCCCATCATTTC
TCCACGGAAAGCGCAACGGGCGAGGCCCTCCTAAACAAGTGTCGAAAACT
CCAGCAGGAAAACGAGGTTTTGGCCATGCGCTTGGAGAAAGAGGGGGGAA
AGGAGGGAGGGCGGGAGGAGGAGTTAAAGCTGCAAATAGTGGACTTGCAG
AAGGCATTAGAGGAGAGTCAGGCACGGGTCGAGGACTTGGATGAGGAGAG
AGGGCTGTTGAGCACGATGTTGTACGCATTGAAGAAGCAATTAATGGCGG
CCACGTCGACGTCTGCTTTGATGGTAGGAGGGGAAGAAGGGGGAGGGGAC
GGAAAGGGGATGGAGGTTGAGACGGGGTGA
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Synonyms
Publications