jgi.p|Nanoce1779_2|591526, mRNA_5142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591526
Unique NamemRNA_5142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_12:565426..566159 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591612
TrackFilteredModels2
ProteinId591526
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:565426..566159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591526gene_5142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591526mRNA_5142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5142CDS_5142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5142 ID=mRNA_5142|Name=jgi.p|Nanoce1779_2|591526|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
GACGCGTGAAGTGAGAGAGGCCCAAGTCAGACATGCTCGGTGGGCTATCA
AGGTCCCGTGGACGGGGTATCTCCTCCTCCTCCTCCTCCTCGTTTTCATT
TTCTGCCACCACCTCCACAAGGAGCGTTTGTCCTTCTGCTGCTGCCTCTG
CCGCTGCTGTCTCCCCCCCCCCCTCCACCCCTTCCTCTTCGTCCTCCTCG
TCTCCGTCCTCCTTCTCGTTCTCCTCCTCCGTCATCTCCTCACTCAGTGA
CGCCGCTTCCGCCTCAACAGCAGCAGAGCTCACGCCAGCAGTAGTAGCAA
CGTCATCCTCCCTTACTCCTACCTCCTTCTCCTCTGCCTTCTTGTCGTCC
CTTGCCTCCTCCTCCTCCTCCTCCTCGCCCTCCACCAGCTGCAGCCCCAC
ATCCTCCACCAAGCTTCGCAACTCCTCTGACTCTGCAGCTGTGGCTGATA
CTGCTGCTGTAGTAACGGGCGAGCCGGCCATAGACCTCCTACTTCCGAGA
GGGGCCAAACTCTTGGGTGTGTATGTCTCCTCCCGTATCTCTCCCTCCTC
CAAGCTCTCCTCGTCACTCTCCTCTTCTTCCCTCCCTCCCTCCTCTTCTT
CCTCCTCCGCCACGATAGAAGGACGACGACCAGCAGCAGAGGGCACCCCT
AGACCCGCTGGCATCAATGCCTTCCCCTGAGCGCTTTCCATTTCCATCTC
ATCCCTCTCCCCACCCCCCTCCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|591526

>mRNA_5142-protein ID=mRNA_5142-protein|Name=jgi.p|Nanoce1779_2|591526|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MLGGLSRSRGRGISSSSSSSFSFSATTSTRSVCPSAAASAAAVSPPPSTP
SSSSSSSPSSFSFSSSVISSLSDAASASTAAELTPAVVATSSSLTPTSFS
SAFLSSLASSSSSSSPSTSCSPTSSTKLRNSSDSAAVADTAAVVTGEPAI
DLLLPRGAKLLGVYVSSRISPSSKLSSSLSSSSLPPSSSSSSATIEGRRP
AAEGTPRPAGINAFP*
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mRNA from alignment at scaffold_12:565426..566159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5142 ID=mRNA_5142|Name=jgi.p|Nanoce1779_2|591526|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_12:565426..566159+ (Nannochloropsis oceanica)
GACGCGTGAAGTGAGAGAGGCCCAAGTCAGACATGCTCGGTGGGCTATCA
AGGTCCCGTGGACGGGGTATCTCCTCCTCCTCCTCCTCCTCGTTTTCATT
TTCTGCCACCACCTCCACAAGGAGCGTTTGTCCTTCTGCTGCTGCCTCTG
CCGCTGCTGTCTCCCCCCCCCCCTCCACCCCTTCCTCTTCGTCCTCCTCG
TCTCCGTCCTCCTTCTCGTTCTCCTCCTCCGTCATCTCCTCACTCAGTGA
CGCCGCTTCCGCCTCAACAGCAGCAGAGCTCACGCCAGCAGTAGTAGCAA
CGTCATCCTCCCTTACTCCTACCTCCTTCTCCTCTGCCTTCTTGTCGTCC
CTTGCCTCCTCCTCCTCCTCCTCCTCGCCCTCCACCAGCTGCAGCCCCAC
ATCCTCCACCAAGCTTCGCAACTCCTCTGACTCTGCAGCTGTGGCTGATA
CTGCTGCTGTAGTAACGGGCGAGCCGGCCATAGACCTCCTACTTCCGAGA
GGGGCCAAACTCTTGGGTGTGTATGTCTCCTCCCGTATCTCTCCCTCCTC
CAAGCTCTCCTCGTCACTCTCCTCTTCTTCCCTCCCTCCCTCCTCTTCTT
CCTCCTCCGCCACGATAGAAGGACGACGACCAGCAGCAGAGGGCACCCCT
AGACCCGCTGGCATCAATGCCTTCCCCTGAGCGCTTTCCATTTCCATCTC
ATCCCTCTCCCCACCCCCCTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_12:565426..566159+

>mRNA_5142 ID=mRNA_5142|Name=jgi.p|Nanoce1779_2|591526|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_12:565426..566159+ (Nannochloropsis oceanica)
ATGCTCGGTGGGCTATCAAGGTCCCGTGGACGGGGTATCTCCTCCTCCTC
CTCCTCCTCGTTTTCATTTTCTGCCACCACCTCCACAAGGAGCGTTTGTC
CTTCTGCTGCTGCCTCTGCCGCTGCTGTCTCCCCCCCCCCCTCCACCCCT
TCCTCTTCGTCCTCCTCGTCTCCGTCCTCCTTCTCGTTCTCCTCCTCCGT
CATCTCCTCACTCAGTGACGCCGCTTCCGCCTCAACAGCAGCAGAGCTCA
CGCCAGCAGTAGTAGCAACGTCATCCTCCCTTACTCCTACCTCCTTCTCC
TCTGCCTTCTTGTCGTCCCTTGCCTCCTCCTCCTCCTCCTCCTCGCCCTC
CACCAGCTGCAGCCCCACATCCTCCACCAAGCTTCGCAACTCCTCTGACT
CTGCAGCTGTGGCTGATACTGCTGCTGTAGTAACGGGCGAGCCGGCCATA
GACCTCCTACTTCCGAGAGGGGCCAAACTCTTGGGTGTGTATGTCTCCTC
CCGTATCTCTCCCTCCTCCAAGCTCTCCTCGTCACTCTCCTCTTCTTCCC
TCCCTCCCTCCTCTTCTTCCTCCTCCGCCACGATAGAAGGACGACGACCA
GCAGCAGAGGGCACCCCTAGACCCGCTGGCATCAATGCCTTCCCCTGA
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Synonyms
Publications