jgi.p|Nanoce1779_2|54751, mRNA_5140 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|54751
Unique NamemRNA_5140
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_12:562572..563329 +

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Properties
Property NameValue
TranscriptId54837
TrackFilteredModels2
ProteinId54751
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:562572..563329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|54751gene_5140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|54751mRNA_5140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5140CDS_5140Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5140 ID=mRNA_5140|Name=jgi.p|Nanoce1779_2|54751|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
AACCCCACCCCCACCCCCTACCCCCTACCCCACCCCCAAGCCTTAGGTTG
ACTGAAGCTTGTGGTGGGCGAGGCCGTGTTTGGGATCGGGTGGGGAATGA
TAGGGCTCTGCCCCGGGCCTGCGTTGGTGTTGCTGGCGTAGGGGGATATC
CAGGAAGGTGGTTTGTTTTTTCATGCCCCTGTATGTGGTGGGCCACCTGG
GGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGATGGCCCTGGGAG
AGTATCCGCGCTCCTGGCACATTTCCTGCCACGGAATTGGAGAAGGATCA
ACGGTCTCGGCACAAAAAGAAGTGGCAGTAGACCTCGGGAGGTAGCTCTA
GCACATTTTTTTGGCTTTGATACGAGTAAAGTGGATGAAAATGTTGAGTT
TGCATTACTTTTTTTGTTCCACTGGTGTGCATACCAGCTAAACGAAAATT
TTGGCTTATCTCGTGAAAGTCACCCCTGTGTATCATTATCTTCAGCTTTA
TTTTTCGCTTTCCATCATATTTTTCGTCCGCACAAGAGGGACATATGCCC
ACACGCTAACAAACAGAGACAGACAGACAAGCTACGGCCTCCCCTCTGCT
CGGACAAAGCTTTCTGGATGAAAACACTCGGCTGTCTTCCTTTGCCATTT
AGTTCTTTTTTTTTTCAATTCGAATGAATCGTGCTAGCTGCTTCGCATCT
CTCATTTTCACACACACACTCTCTCATTCACTCGCTCTCTCTCTCTCTCT
CTCTCTCT
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protein sequence of jgi.p|Nanoce1779_2|54751

>mRNA_5140-protein ID=mRNA_5140-protein|Name=jgi.p|Nanoce1779_2|54751|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MWWATWGRASWRGRRRQSDGPGRVSALLAHFLPRNWRRINGLGTKRSGSR
PREVALAHFFGFDTSKVDENVEFALLFLFHWCAYQLNENFGLSRESHPCV
SLSSALFFAFHHIFRPHKRDICPHANKQRQTDKLRPPLCSDKAFWMKTLG
CLPLPFSSFFFQFE*
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mRNA from alignment at scaffold_12:562572..563329+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5140 ID=mRNA_5140|Name=jgi.p|Nanoce1779_2|54751|organism=Nannochloropsis oceanica|type=mRNA|length=758bp|location=Sequence derived from alignment at scaffold_12:562572..563329+ (Nannochloropsis oceanica)
AACCCCACCCCCACCCCCTACCCCCTACCCCACCCCCAAGCCTTAGGTTG
ACTGAAGCTTGTGGTGGGCGAGGCCGTGTTTGGGATCGGGTGGGGAATGA
TAGGGCTCTGCCCCGGGCCTGCGTTGGTGTTGCTGGCGTAGGGGGATATC
CAGGAAGGTGGTTTGTTTTTTCATGCCCCTGTATGTGGTGGGCCACCTGG
GGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGATGGCCCTGGGAG
AGTATCCGCGCTCCTGGCACATTTCCTGCCACGGAATTGGAGAAGGATCA
ACGGTCTCGGCACAAAAAGAAGTGGCAGTAGACCTCGGGAGGTAGCTCTA
GCACATTTTTTTGGCTTTGATACGAGTAAAGTGGATGAAAATGTTGAGTT
TGCATTACTTTTTTTGTTCCACTGGTGTGCATACCAGCTAAACGAAAATT
TTGGCTTATCTCGTGAAAGTCACCCCTGTGTATCATTATCTTCAGCTTTA
TTTTTCGCTTTCCATCATATTTTTCGTCCGCACAAGAGGGACATATGCCC
ACACGCTAACAAACAGAGACAGACAGACAAGCTACGGCCTCCCCTCTGCT
CGGACAAAGCTTTCTGGATGAAAACACTCGGCTGTCTTCCTTTGCCATTT
AGTTCTTTTTTTTTTCAATTCGAATGAATCGTGCTAGCTGCTTCGCATCT
CTCATTTTCACACACACACTCTCTCATTCACTCGCTCTCTCTCTCTCTCT
CTCTCTCT
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Coding sequence (CDS) from alignment at scaffold_12:562572..563329+

>mRNA_5140 ID=mRNA_5140|Name=jgi.p|Nanoce1779_2|54751|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_12:562572..563329+ (Nannochloropsis oceanica)
ATGTGGTGGGCCACCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACA
AAGTGATGGCCCTGGGAGAGTATCCGCGCTCCTGGCACATTTCCTGCCAC
GGAATTGGAGAAGGATCAACGGTCTCGGCACAAAAAGAAGTGGCAGTAGA
CCTCGGGAGGTAGCTCTAGCACATTTTTTTGGCTTTGATACGAGTAAAGT
GGATGAAAATGTTGAGTTTGCATTACTTTTTTTGTTCCACTGGTGTGCAT
ACCAGCTAAACGAAAATTTTGGCTTATCTCGTGAAAGTCACCCCTGTGTA
TCATTATCTTCAGCTTTATTTTTCGCTTTCCATCATATTTTTCGTCCGCA
CAAGAGGGACATATGCCCACACGCTAACAAACAGAGACAGACAGACAAGC
TACGGCCTCCCCTCTGCTCGGACAAAGCTTTCTGGATGAAAACACTCGGC
TGTCTTCCTTTGCCATTTAGTTCTTTTTTTTTTCAATTCGAATGA
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Synonyms
Publications