jgi.p|Nanoce1779_2|639668, mRNA_5138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639668
Unique NamemRNA_5138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1509
Alignment locationscaffold_12:555179..556955 -

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Properties
Property NameValue
TranscriptId639754
TrackFilteredModels2
ProteinId639668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:555179..556955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639668gene_5138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639668mRNA_5138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5138CDS_5138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Nanoce1779_2|639668|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
ATGCCGTTTCACACCATCGTTGTCGCTGTTTCGGGTGGAGCAGATTCCAT
GGCTTTATTGCACCTCTTGGCCCGGGTTCGTGCCCGATGGGACCCGCCTC
TCAGCCTTACTGTCGCGCATTTCAATCACGGCTTGCGTCCCGAGGCAGCG
CAGGAAGAAGAGGTGTTTGTCCGCAACGCAGCAGCAACTTTGCAGGTACC
CATGCACGTCGTAGTGTGGGGAGAGGTGGAGCGGGCGCAAACCACGGCCA
TCCAAGAACGGGCCCGGGGTTGGCGCCGAGCCGAATGCGAGCGACTCGTG
CGGGAGCTGCAGCAGCAGCAGAGAGGAGGAGCAGCAGCAAAACCAACAGC
AGCGCAAGGTGTGATTGCCACGGCGCACCATGCCGACGATTCTCTTGAGA
CCTGGGCGATGAAACTCTTGCGAGGGACACATTTAAGCCACACAAAAGGA
ATGGCACCACGCGCGGGCATTTATGTCAAGCCCCTGTTAAACGTCCGCAA
AGAAAGACTCGTTCGCTTCCTGGAATCCCAAGGCCTGGAATGGAAAGAAG
ACGAGTCCAACCAGATTGATAAGTACAAACGGAATAAGGTACGTTTGAAG
TTGTTGCCATTGATGGCTGAGGTGGCCGGGGGCGAAGCTGCCTTGATGGC
AAGGATGGAGGAGATGACCTGCCAAAGCAAGGGGTTGGAGGAGTGGTTGG
CCCATGAGGCGAGTGCCTGGGAGGGACGCCATTCAGCAGAGGCACCGTTG
GATATCGTTCAAAGTGGGAATGAATTGTGTATCGGTATGAAAAATGCGAT
TTCTCTATGGGCGCCCTTGTCTCGTCTGCTCAAGGAAGAATTGTTGCACC
GCTTCGTGGCCCGTGTCACAAAAGGTGCCATCAGCTTGACTTACGGCCAA
GTTCGTCGAACGATGGAGCAACTGGAGAGAGATGAGAATGAGACGGAGGG
AGGACGGAAAAAGAAGTTAGAATGGCGCCTGGATGTAGGAGACGGGTGGG
TGTTGGGTCGGCAGGGCGATGTGTTACGGGTAATAAAGGATGAAATAGGT
CTAGAAGGAGCAAGCCGTATGATCTCCATGCACGAGACAGGCCTCACTTT
TTCCGTGCCTACAGGTTGGGAAGTAGAGGCGAAGCGCATAGAGATCTCTC
TTTCTCCTTCATCAGAAGAGTGGGATTTGATCCTCCCTCATGTCCCCACG
GGAGCCCGTCTCCTGCTTCGGCACCGGCAAGACGGCGACCGCTTCCACCC
TGCATGGCGCTCGGGTTCTATCAAGCTCAAAGACTTTCTGCGGGGTCAAA
ATGTGCCCTTGCACCGACGGGACGAGATCTTACTGGTGGTGTTGCTGTCG
GCCAGTGGGAAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAAAGAGTATT
GGGTCTCTACCCAACAGGGCACGTGGCAGCGGCGCCTGCGGGAGCAAATG
TTAATGTACAACCTTTGGGCGCGCACTTGGCTTGCCTGCTGTCGGATCTG
CCTGCCTAA
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protein sequence of jgi.p|Nanoce1779_2|639668

>mRNA_5138-protein ID=mRNA_5138-protein|Name=jgi.p|Nanoce1779_2|639668|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAA
QEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLV
RELQQQQRGGAAAKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKG
MAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLK
LLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPL
DIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQ
VRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIG
LEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPT
GARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEILLVVLLS
ASGKEEEEEAEEEERVLGLYPTGHVAAAPAGANVNVQPLGAHLACLLSDL
PA*
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mRNA from alignment at scaffold_12:555179..556955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Nanoce1779_2|639668|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at scaffold_12:555179..556955- (Nannochloropsis oceanica)
ATGCCGTTTCACACCATCGTTGTCGCTGTTTCGGGTGGAGCAGATTCCAT
GGCTTTATTGCACCTCTTGGCCCGGGTTCGTGCCCGATGGGACCCGCCTC
TCAGCCTTACTGTCGCGCATTTCAATCACGGCTTGCGTCCCGAGGCAGCG
CAGGAAGAAGAGGTGTTTGTCCGCAACGCAGCAGCAACTTTGCAGGTACC
CATGCACGTCGTAGTGTGGGGAGAGGTGGAGCGGGCGCAAACCACGGCCA
TCCAAGAACGGGCCCGGGGTTGGCGCCGAGCCGAATGCGAGCGACTCGTG
CGGGAGCTGCAGCAGCAGCAGAGAGGAGGAGCAGCAGCAAAACCAACAGC
AGCGCAAGGTGTGATTGCCACGGCGCACCATGCCGACGATTCTCTTGAGA
CCTGGGCGATGAAACTCTTGCGAGGGACACATTTAAGCCACACAAAAGGA
ATGGCACCACGCGCGGGCATTTATGTCAAGCCCCTGTTAAACGTCCGCAA
AGAAAGACTCGTTCGCTTCCTGGAATCCCAAGGCCTGGAATGGAAAGAAG
ACGAGTCCAACCAGATTGATAAGTACAAACGGAATAAGGTACGTTTGAAG
TTGTTGCCATTGATGGCTGAGGTGGCCGGGGGCGAAGCTGCCTTGATGGC
AAGGATGGAGGAGATGACCTGCCAAAGCAAGGGGTTGGAGGAGTGGTTGG
CCCATGAGGCGAGTGCCTGGGAGGGACGCCATTCAGCAGAGGCACCGTTG
GATATCGTTCAAAGTGGGAATGAATTGTGTATCGGTATGAAAAATGCGAT
TTCTCTATGGGCGCCCTTGTCTCGTCTGCTCAAGGAAGAATTGTTGCACC
GCTTCGTGGCCCGTGTCACAAAAGGTGCCATCAGCTTGACTTACGGCCAA
GTTCGTCGAACGATGGAGCAACTGGAGAGAGATGAGAATGAGACGGAGGG
AGGACGGAAAAAGAAGTTAGAATGGCGCCTGGATGTAGGAGACGGGTGGG
TGTTGGGTCGGCAGGGCGATGTGTTACGGGTAATAAAGGATGAAATAGGT
CTAGAAGGAGCAAGCCGTATGATCTCCATGCACGAGACAGGCCTCACTTT
TTCCGTGCCTACAGGTTGGGAAGTAGAGGCGAAGCGCATAGAGATCTCTC
TTTCTCCTTCATCAGAAGAGTGGGATTTGATCCTCCCTCATGTCCCCACG
GGAGCCCGTCTCCTGCTTCGGCACCGGCAAGACGGCGACCGCTTCCACCC
TGCATGGCGCTCGGGTTCTATCAAGCTCAAAGACTTTCTGCGGGGTCAAA
ATGTGCCCTTGCACCGACGGGACGAGATCTTACTGGTGGTGTTGCTGTCG
GCCAGTGGGAAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAAAGAGTATT
GGGTCTCTACCCAACAGGGCACGTGGCAGCGGCGCCTGCGGGAGCAAATG
TTAATGTACAACCTTTGGGGTTGCGATTTAAAAGAGAGGGATTATGAACG
TGTAAAAAGTAATGTAAAGAAAAAAGAATCGGAAAGAATGACACATTTTT
TGTTATCGCAGAGCCATGTTTATGTTCATGATACTCAAGTCATGAGCACC
CCACGCCTCCTTCCGTATGAAGCGCTTGTGCTTGTGTAAAGTGTGATGTG
GCATCCCTGCTTCTCAACCACGACCATGATGCCAGGGTATGTTTCTCTTA
TGTAAGACCTCGCCTCTTTCTTCCCTGTCCCCTATAGCGCGCACTTGGCT
TGCCTGCTGTCGGATCTGCCTGCCTAA
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Coding sequence (CDS) from alignment at scaffold_12:555179..556955-

>mRNA_5138 ID=mRNA_5138|Name=jgi.p|Nanoce1779_2|639668|organism=Nannochloropsis oceanica|type=CDS|length=3018bp|location=Sequence derived from alignment at scaffold_12:555179..556955- (Nannochloropsis oceanica)
CGCGCACTTGGCTTGCCTGCTGTCGGATCTGCCTGCCTAAATGCCGTTTC
ACACCATCGTTGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTG
CACCTCTTGGCCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTAC
TGTCGCGCATTTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAG
AGGTGTTTGTCCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTC
GTAGTGTGGGGAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACG
GGCCCGGGGTTGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGC
AGCAGCAGCAGAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGT
GTGATTGCCACGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGAT
GAAACTCTTGCGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCAC
GCGCGGGCATTTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTC
GTTCGCTTCCTGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAA
CCAGATTGATAAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCAT
TGATGGCTGAGGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAG
GAGATGACCTGCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGC
GAGTGCCTGGGAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTC
AAAGTGGGAATGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGG
GCGCCCTTGTCTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGC
CCGTGTCACAAAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAA
CGATGGAGCAACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAA
AAGAAGTTAGAATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCG
GCAGGGCGATGTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAG
CAAGCCGTATGATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCT
ACAGGTTGGGAAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTC
ATCAGAAGAGTGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTC
TCCTGCTTCGGCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGC
TCGGGTTCTATCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTT
GCACCGACGGGACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGA
AGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTAC
CCAACAGGGCACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACA
ACCTTTGGGCGCGCACTTGGCTTGCCTGCTGTCGGATCTGCCTGCCTAAA
TGCCGTTTCACACCATCGTTGTCGCTGTTTCGGGTGGAGCAGATTCCATG
GCTTTATTGCACCTCTTGGCCCGGGTTCGTGCCCGATGGGACCCGCCTCT
CAGCCTTACTGTCGCGCATTTCAATCACGGCTTGCGTCCCGAGGCAGCGC
AGGAAGAAGAGGTGTTTGTCCGCAACGCAGCAGCAACTTTGCAGGTACCC
ATGCACGTCGTAGTGTGGGGAGAGGTGGAGCGGGCGCAAACCACGGCCAT
CCAAGAACGGGCCCGGGGTTGGCGCCGAGCCGAATGCGAGCGACTCGTGC
GGGAGCTGCAGCAGCAGCAGAGAGGAGGAGCAGCAGCAAAACCAACAGCA
GCGCAAGGTGTGATTGCCACGGCGCACCATGCCGACGATTCTCTTGAGAC
CTGGGCGATGAAACTCTTGCGAGGGACACATTTAAGCCACACAAAAGGAA
TGGCACCACGCGCGGGCATTTATGTCAAGCCCCTGTTAAACGTCCGCAAA
GAAAGACTCGTTCGCTTCCTGGAATCCCAAGGCCTGGAATGGAAAGAAGA
CGAGTCCAACCAGATTGATAAGTACAAACGGAATAAGGTACGTTTGAAGT
TGTTGCCATTGATGGCTGAGGTGGCCGGGGGCGAAGCTGCCTTGATGGCA
AGGATGGAGGAGATGACCTGCCAAAGCAAGGGGTTGGAGGAGTGGTTGGC
CCATGAGGCGAGTGCCTGGGAGGGACGCCATTCAGCAGAGGCACCGTTGG
ATATCGTTCAAAGTGGGAATGAATTGTGTATCGGTATGAAAAATGCGATT
TCTCTATGGGCGCCCTTGTCTCGTCTGCTCAAGGAAGAATTGTTGCACCG
CTTCGTGGCCCGTGTCACAAAAGGTGCCATCAGCTTGACTTACGGCCAAG
TTCGTCGAACGATGGAGCAACTGGAGAGAGATGAGAATGAGACGGAGGGA
GGACGGAAAAAGAAGTTAGAATGGCGCCTGGATGTAGGAGACGGGTGGGT
GTTGGGTCGGCAGGGCGATGTGTTACGGGTAATAAAGGATGAAATAGGTC
TAGAAGGAGCAAGCCGTATGATCTCCATGCACGAGACAGGCCTCACTTTT
TCCGTGCCTACAGGTTGGGAAGTAGAGGCGAAGCGCATAGAGATCTCTCT
TTCTCCTTCATCAGAAGAGTGGGATTTGATCCTCCCTCATGTCCCCACGG
GAGCCCGTCTCCTGCTTCGGCACCGGCAAGACGGCGACCGCTTCCACCCT
GCATGGCGCTCGGGTTCTATCAAGCTCAAAGACTTTCTGCGGGGTCAAAA
TGTGCCCTTGCACCGACGGGACGAGATCTTACTGGTGGTGTTGCTGTCGG
CCAGTGGGAAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAAAGAGTATTG
GGTCTCTACCCAACAGGGCACGTGGCAGCGGCGCCTGCGGGAGCAAATGT
TAATGTACAACCTTTGGG
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Synonyms
Publications