jgi.p|Nanoce1779_2|591510, mRNA_5136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591510
Unique NamemRNA_5136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_12:550144..551412 -

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Properties
Property NameValue
TranscriptId591596
TrackFilteredModels2
ProteinId591510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:550144..551412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591510gene_5136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591510mRNA_5136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5136CDS_5136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5136 ID=mRNA_5136|Name=jgi.p|Nanoce1779_2|591510|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
CAGGCAAGAAGCAGACGACGACCGCCTTCTTCACGCCCAGGCACAAAATG
ACAACACACATGAAGGCGCAACAGCCGGCGGCGGCTCCCTCCATCTGGTC
GACGGAGGGTGCGGCCCGCTTGGGCCAGGGCGTGACTATGGCGACTAGTC
ACGATGACGGCAGCATCGACCACGGCGTGACCCAGGCGCCTTATGAGCGC
CGCTTCTCTCCGTATGATTTCAATGGCGGCACGTGTCTGGCCATTGCCGG
CAAGGATTTTGCTGTGGTGGCAGGAGACACACGTTTGAGCACGGGTTACG
AGATTCTGTCGCGCAATGTCCCCAAGCTTTGCAAACTTACAAGCAAGACC
GTGCTTGCCTCGGCGGGTTGTTTGACGGACGTCCGCACCCTGCAGCAAGT
CTTGGACATGCGGCTGCGCATGTACGAACACGACAATGGCAAGGAAATCA
GCACCCCCGCCGTCGCCCAGTTGCTGGGAAACACTCTGTATTACCGTCGT
TTCTTCCCTTATTATGCTTTTAATGTCCTGGCGGGTGTGGATGATGAAGG
GAAGGGCTGTGTCTTCTCTTACGATGCGGTCGGGTCGCATGAACGGGTGG
AGTATTCAGCCAGTGGATCAGGGCAAGCTTTTGTCATTCCCCTCCTCGAC
AATATCGTGGGCTTCAAAAACCGACAAGACTCCAAGCCGGAGTACACCGC
TGAGCAGGTTGTGGCGATTTGCAAGGACGCTTTCCTGACCGCGGGCGAGC
GTGACATTTATACGGGAGATGCGGTGATGATCAGCGTCATTACCTCGAAG
GGGGTGACGACAGAGACCTTCCACTTAAAGAAGGATTAAGGGATGGGATT
GGTAGGAGAGGGGATGGGGGGGAGGCAGACAATGTGATATGTGTGAAGTC
GGGGGTCGAAACGACAGATGAAGGGAAAGAGGACAAAGAAAGAAAGAGAA
CACAAAATTAGTA
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protein sequence of jgi.p|Nanoce1779_2|591510

>mRNA_5136-protein ID=mRNA_5136-protein|Name=jgi.p|Nanoce1779_2|591510|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MTTHMKAQQPAAAPSIWSTEGAARLGQGVTMATSHDDGSIDHGVTQAPYE
RRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSK
TVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYR
RFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPLL
DNIVGFKNRQDSKPEYTAEQVVAICKDAFLTAGERDIYTGDAVMISVITS
KGVTTETFHLKKD*
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mRNA from alignment at scaffold_12:550144..551412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5136 ID=mRNA_5136|Name=jgi.p|Nanoce1779_2|591510|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_12:550144..551412- (Nannochloropsis oceanica)
CAGGCAAGAAGCAGACGACGACCGCCTTCTTCACGCCCAGGCACAAAATG
ACAACACACATGAAGTAAGTAATACTTACTCCCTATGGTCATCCTCTAGC
ACTCGCATACTCAAGCTTAATAACATGCCTTTTGTTGAACCGTAGGGCGC
AACAGCCGGCGGCGGCTCCCTCCATCTGGTCGACGGAGGGTGCGGCCCGC
TTGGGCCAGGGCGTGACTATGGCGACTAGTCACGATGACGGCAGCATCGA
CCACGGCGTGACCCAGGCGCCTTATGAGCGCCGCTTCTCTCCGTATGATT
TCAATGGCGGGTATGTGGTTGCCTAGGGTATGGACAAGGGAACGGGCAGC
AGCGAAGGTACCAAAAAAGATGTATCCGCACGTGCCCACCTCATCACACT
ATCCCCCGAATAACAGCACGTGTCTGGCCATTGCCGGCAAGGATTTTGCT
GTGGTGGCAGGAGACACACGTTTGAGCACGGGTTACGAGATTCTGTCGCG
CAATGTCCCCAAGCTTTGCAAACTGTACGTTCTCTCTTTCTCTCCCCTTC
TCCCTCCCCCGGCTTCCTTCCTCCTTCCGCTCCCTCTCTTCCTCTCTACA
TCCTCCTCACCCTTTTCCACGCGTACCCATTCAATCAAAATAGTACAAGC
AAGACCGTGCTTGCCTCGGCGGGTTGTTTGACGGACGTCCGCACCCTGCA
GCAAGTCTTGGACATGCGGCTGCGCATGTACGAACACGACAATGGCAAGG
AAATCAGCACCCCCGCCGTCGCCCAGTTGCTGGGAAACACTCTGTATTAC
CGTCGTTTCTTCCCTTATTATGCTTTTAATGTCCTGGCGGGTGTGGATGA
TGAAGGGAAGGGCTGTGTCTTCTCTTACGATGCGGTCGGGTCGCATGAAC
GGGTGGAGTATTCAGCCAGTGGATCAGGGCAAGCTTTTGTCATTCCCCTC
CTCGACAATATCGTGGGCTTCAAAAACCGACAAGACTCCAAGCCGGAGTA
CACCGCTGAGCAGGTTGTGGCGATTTGCAAGGACGCTTTCCTGACCGCGG
GCGAGCGTGACATTTATACGGGAGATGCGGTGATGATCAGCGTCATTACC
TCGAAGGGGGTGACGACAGAGACCTTCCACTTAAAGAAGGATTAAGGGAT
GGGATTGGTAGGAGAGGGGATGGGGGGGAGGCAGACAATGTGATATGTGT
GAAGTCGGGGGTCGAAACGACAGATGAAGGGAAAGAGGACAAAGAAAGAA
AGAGAACACAAAATTAGTA
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Coding sequence (CDS) from alignment at scaffold_12:550144..551412-

>mRNA_5136 ID=mRNA_5136|Name=jgi.p|Nanoce1779_2|591510|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_12:550144..551412- (Nannochloropsis oceanica)
TACAAGCAAGACCGTGCTTGCCTCGGCGGGTTGTTTGACGGACGTCCGCA
CCCTGCAGCAAGTCTTGGACATGCGGCTGCGCATGTACGAACACGACAAT
GGCAAGGAAATCAGCACCCCCGCCGTCGCCCAGTTGCTGGGAAACACTCT
GTATTACCGTCGTTTCTTCCCTTATTATGCTTTTAATGTCCTGGCGGGTG
TGGATGATGAAGGGAAGGGCTGTGTCTTCTCTTACGATGCGGTCGGGTCG
CATGAACGGGTGGAGTATTCAGCCAGTGGATCAGGGCAAGCTTTTGTCAT
TCCCCTCCTCGACAATATCGTGGGCTTCAAAAACCGACAAGACTCCAAGC
CGGAGTACACCGCTGAGCAGGTTGTGGCGATTTGCAAGGACGCTTTCCTG
ACCGCGGGCGAGCGTGACATTTATACGGGAGATGCGGTGATGATCAGCGT
CATTACCTCGAAGGGGGTGACGACAGAGACCTTCCACTTAAAGAAGGATT
AACACGTGTCTGGCCATTGCCGGCAAGGATTTTGCTGTGGTGGCAGGAGA
CACACGTTTGAGCACGGGTTACGAGATTCTGTCGCGCAATGTCCCCAAGC
TTTGCAAACTGGCGCAACAGCCGGCGGCGGCTCCCTCCATCTGGTCGACG
GAGGGTGCGGCCCGCTTGGGCCAGGGCGTGACTATGGCGACTAGTCACGA
TGACGGCAGCATCGACCACGGCGTGACCCAGGCGCCTTATGAGCGCCGCT
TCTCTCCGTATGATTTCAATGGCGGATGACAACACACATGAATACAAGCA
AGACCGTGCTTGCCTCGGCGGGTTGTTTGACGGACGTCCGCACCCTGCAG
CAAGTCTTGGACATGCGGCTGCGCATGTACGAACACGACAATGGCAAGGA
AATCAGCACCCCCGCCGTCGCCCAGTTGCTGGGAAACACTCTGTATTACC
GTCGTTTCTTCCCTTATTATGCTTTTAATGTCCTGGCGGGTGTGGATGAT
GAAGGGAAGGGCTGTGTCTTCTCTTACGATGCGGTCGGGTCGCATGAACG
GGTGGAGTATTCAGCCAGTGGATCAGGGCAAGCTTTTGTCATTCCCCTCC
TCGACAATATCGTGGGCTTCAAAAACCGACAAGACTCCAAGCCGGAGTAC
ACCGCTGAGCAGGTTGTGGCGATTTGCAAGGACGCTTTCCTGACCGCGGG
CGAGCGTGACATTTATACGGGAGATGCGGTGATGATCAGCGTCATTACCT
CGAAGGGGGTGACGACAGAGACCTTCCACTTAAAGAAGGATTAACACGTG
TCTGGCCATTGCCGGCAAGGATTTTGCTGTGGTGGCAGGAGACACACGTT
TGAGCACGGGTTACGAGATTCTGTCGCGCAATGTCCCCAAGCTTTGCAAA
CTGGCGCAACAGCCGGCGGCGGCTCCCTCCATCTGGTCGACGGAGGGTGC
GGCCCGCTTGGGCCAGGGCGTGACTATGGCGACTAGTCACGATGACGGCA
GCATCGACCACGGCGTGACCCAGGCGCCTTATGAGCGCCGCTTCTCTCCG
TATGATTTCAATGGCGGATGACAACACACATGAATACAAGCAAGACCGTG
CTTGCCTCGGCGGGTTGTTTGACGGACGTCCGCACCCTGCAGCAAGTCTT
GGACATGCGGCTGCGCATGTACGAACACGACAATGGCAAGGAAATCAGCA
CCCCCGCCGTCGCCCAGTTGCTGGGAAACACTCTGTATTACCGTCGTTTC
TTCCCTTATTATGCTTTTAATGTCCTGGCGGGTGTGGATGATGAAGGGAA
GGGCTGTGTCTTCTCTTACGATGCGGTCGGGTCGCATGAACGGGTGGAGT
ATTCAGCCAGTGGATCAGGGCAAGCTTTTGTCATTCCCCTCCTCGACAAT
ATCGTGGGCTTCAAAAACCGACAAGACTCCAAGCCGGAGTACACCGCTGA
GCAGGTTGTGGCGATTTGCAAGGACGCTTTCCTGACCGCGGGCGAGCGTG
ACATTTATACGGGAGATGCGGTGATGATCAGCGTCATTACCTCGAAGGGG
GTGACGACAGAGACCTTCCACTTAAAGAAGGATTAACACGTGTCTGGCCA
TTGCCGGCAAGGATTTTGCTGTGGTGGCAGGAGACACACGTTTGAGCACG
GGTTACGAGATTCTGTCGCGCAATGTCCCCAAGCTTTGCAAACTGGCGCA
ACAGCCGGCGGCGGCTCCCTCCATCTGGTCGACGGAGGGTGCGGCCCGCT
TGGGCCAGGGCGTGACTATGGCGACTAGTCACGATGACGGCAGCATCGAC
CACGGCGTGACCCAGGCGCCTTATGAGCGCCGCTTCTCTCCGTATGATTT
CAATGGCGGATGACAACACACATGAATACAAGCAAGACCGTGCTTGCCTC
GGCGGGTTGTTTGACGGACGTCCGCACCCTGCAGCAAGTCTTGGACATGC
GGCTGCGCATGTACGAACACGACAATGGCAAGGAAATCAGCACCCCCGCC
GTCGCCCAGTTGCTGGGAAACACTCTGTATTACCGTCGTTTCTTCCCTTA
TTATGCTTTTAATGTCCTGGCGGGTGTGGATGATGAAGGGAAGGGCTGTG
TCTTCTCTTACGATGCGGTCGGGTCGCATGAACGGGTGGAGTATTCAGCC
AGTGGATCAGGGCAAGCTTTTGTCATTCCCCTCCTCGACAATATCGTGGG
CTTCAAAAACCGACAAGACTCCAAGCCGGAGTACACCGCTGAGCAGGTTG
TGGCGATTTGCAAGGACGCTTTCCTGACCGCGGGCGAGCGTGACATTTAT
ACGGGAGATGCGGTGATGATCAGCGTCATTACCTCGAAGGGGGTGACGAC
AGAGACCTTCCACTTAAAGAAGGATTAACACGTGTCTGGCCATTGCCGGC
AAGGATTTTGCTGTGGTGGCAGGAGACACACGTTTGAGCACGGGTTACGA
GATTCTGTCGCGCAATGTCCCCAAGCTTTGCAAACTGGCGCAACAGCCGG
CGGCGGCTCCCTCCATCTGGTCGACGGAGGGTGCGGCCCGCTTGGGCCAG
GGCGTGACTATGGCGACTAGTCACGATGACGGCAGCATCGACCACGGCGT
GACCCAGGCGCCTTATGAGCGCCGCTTCTCTCCGTATGATTTCAATGGCG
GATGACAACACACATGAA
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Synonyms
Publications