jgi.p|Nanoce1779_2|591508, mRNA_5135 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591508
Unique Name	mRNA_5135
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	782
Alignment location	scaffold_12:549362..550143 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591594
Track	FilteredModels2
ProteinId	591508

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:549362..550143 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591508	gene_5135	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591508	mRNA_5135-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5135	CDS_5135	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:549362..550143+
coding sequence from alignment at scaffold_12:549362..550143+

mRNA sequence

>mRNA_5135 ID=mRNA_5135|Name=jgi.p|Nanoce1779_2|591508|organism=Nannochloropsis oceanica|type=mRNA|length=782bp
AGCTTGCTGTCAGTCCCGCTGTCTCGCCGTCTCTCCAAGTCGCACAACCA
CCAGAAATCATCATGGTGGCCGACCTCCCCAAGCAGCCTTCGTCGCAACA
AGGTAAGAAAGCGGAATACGCCGAGTCCTTATTTGACTACCTTTTTGCTG
CCATGATTGATACGCTGCGTACGGGCGGGGATCAAGGGCCCCGGAACGAG
GAGCTGCTGGCAGAGACAGTGCGTGCTATTGGCTTCGACGTCGGGTATCG
CCTGGCGGAATCCACGGTCCAAGGCCGGGTGCTGCCTGCGGACGCGCTGG
AAGTTAACGTGATGAAGTTCATTTGCAAGGAGTTCTGGATCGAGATTTTT
AAGAAGCAGATTGACAAGCTGCAGACGAATAATCAAGGGGTCTTTGTTCT
GCGCGATTCCAAATTTCGGTGGCTCGCCCCATTTACAGCCGATGACGAAG
CAACCCGCCGTGCGGCCGCCACGGTGCTCAATTTTCCTTGTGGTCTCATA
AAAGGCGCTTTGGAAAACTTGGGAATCATATCAACGGTGCAAGCAGAGGT
GGCCCCGGCGGTGCCATCGTGTTCGTTTACCATCAAGATCAAGCGGAGTG
GGGGTAGTGCCGTGAATTCTGCTTATGCGTCGAGCAATAGCAGGACGTAA
AGAGAGAAGGCAAGAAAATATAGAGATAAATAGTGTACATACCCGGAGGA
CCAATCAAATAACAAATGTGCTGTCTTTATACAGCAGGAGATAGAGACAA
ATTCGAAAGGAAAGGGGCATTGCCAAATGGTA

protein sequence of jgi.p|Nanoce1779_2|591508

>mRNA_5135-protein ID=mRNA_5135-protein|Name=jgi.p|Nanoce1779_2|591508|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVADLPKQPSSQQGKKAEYAESLFDYLFAAMIDTLRTGGDQGPRNEELLA
ETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQI
DKLQTNNQGVFVLRDSKFRWLAPFTADDEATRRAAATVLNFPCGLIKGAL
ENLGIISTVQAEVAPAVPSCSFTIKIKRSGGSAVNSAYASSNSRT*

mRNA from alignment at scaffold_12:549362..550143+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5135 ID=mRNA_5135|Name=jgi.p|Nanoce1779_2|591508|organism=Nannochloropsis oceanica|type=mRNA|length=782bp|location=Sequence derived from alignment at scaffold_12:549362..550143+ (Nannochloropsis oceanica)
AGCTTGCTGTCAGTCCCGCTGTCTCGCCGTCTCTCCAAGTCGCACAACCA
CCAGAAATCATCATGGTGGCCGACCTCCCCAAGCAGCCTTCGTCGCAACA
AGGTAAGAAAGCGGAATACGCCGAGTCCTTATTTGACTACCTTTTTGCTG
CCATGATTGATACGCTGCGTACGGGCGGGGATCAAGGGCCCCGGAACGAG
GAGCTGCTGGCAGAGACAGTGCGTGCTATTGGCTTCGACGTCGGGTATCG
CCTGGCGGAATCCACGGTCCAAGGCCGGGTGCTGCCTGCGGACGCGCTGG
AAGTTAACGTGATGAAGTTCATTTGCAAGGAGTTCTGGATCGAGATTTTT
AAGAAGCAGATTGACAAGCTGCAGACGAATAATCAAGGGGTCTTTGTTCT
GCGCGATTCCAAATTTCGGTGGCTCGCCCCATTTACAGCCGATGACGAAG
CAACCCGCCGTGCGGCCGCCACGGTGCTCAATTTTCCTTGTGGTCTCATA
AAAGGCGCTTTGGAAAACTTGGGAATCATATCAACGGTGCAAGCAGAGGT
GGCCCCGGCGGTGCCATCGTGTTCGTTTACCATCAAGATCAAGCGGAGTG
GGGGTAGTGCCGTGAATTCTGCTTATGCGTCGAGCAATAGCAGGACGTAA
AGAGAGAAGGCAAGAAAATATAGAGATAAATAGTGTACATACCCGGAGGA
CCAATCAAATAACAAATGTGCTGTCTTTATACAGCAGGAGATAGAGACAA
ATTCGAAAGGAAAGGGGCATTGCCAAATGGTA

Coding sequence (CDS) from alignment at scaffold_12:549362..550143+

>mRNA_5135 ID=mRNA_5135|Name=jgi.p|Nanoce1779_2|591508|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_12:549362..550143+ (Nannochloropsis oceanica)
ATGGTGGCCGACCTCCCCAAGCAGCCTTCGTCGCAACAAGGTAAGAAAGC
GGAATACGCCGAGTCCTTATTTGACTACCTTTTTGCTGCCATGATTGATA
CGCTGCGTACGGGCGGGGATCAAGGGCCCCGGAACGAGGAGCTGCTGGCA
GAGACAGTGCGTGCTATTGGCTTCGACGTCGGGTATCGCCTGGCGGAATC
CACGGTCCAAGGCCGGGTGCTGCCTGCGGACGCGCTGGAAGTTAACGTGA
TGAAGTTCATTTGCAAGGAGTTCTGGATCGAGATTTTTAAGAAGCAGATT
GACAAGCTGCAGACGAATAATCAAGGGGTCTTTGTTCTGCGCGATTCCAA
ATTTCGGTGGCTCGCCCCATTTACAGCCGATGACGAAGCAACCCGCCGTG
CGGCCGCCACGGTGCTCAATTTTCCTTGTGGTCTCATAAAAGGCGCTTTG
GAAAACTTGGGAATCATATCAACGGTGCAAGCAGAGGTGGCCCCGGCGGT
GCCATCGTGTTCGTTTACCATCAAGATCAAGCGGAGTGGGGGTAGTGCCG
TGAATTCTGCTTATGCGTCGAGCAATAGCAGGACGTAA

Synonyms

Publications