jgi.p|Nanoce1779_2|630819, mRNA_5133 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630819
Unique Name	mRNA_5133
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1988
Alignment location	scaffold_12:543579..545770 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630905
Track	FilteredModels2
ProteinId	630819

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:543579..545770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630819	gene_5133	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630819	mRNA_5133-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5133	CDS_5133	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:543579..545770+
coding sequence from alignment at scaffold_12:543579..545770+

mRNA sequence

>mRNA_5133 ID=mRNA_5133|Name=jgi.p|Nanoce1779_2|630819|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp
CATCGTTTGGCGCCCTGAGGCTTTCCATTCCGCCCCTAAGCAACACGACG
CGCCAAGCAAACCAGTACCAACCATGCCTTTGAATGCACTGCGCCACACG
CGCACTATGACTTACTTTCACACTCCTCTATGCCTCTGATGCATCATGGA
CCAATTATACGAGGCGCACTTATTGCGTGCGTCCCTGTGGTCGTCCCCAA
GAGGAATAGAGAATGGAATAGGGGCCCCACAAGGGAGGGAAATGGTAAGG
TAGCTCTGCTTCTATTCCCGCAACGGTGATCCGAACCAAATTAATGCTTT
TTAATCCATTCACTTTACAGCCTTGGACAGCATGGCAAGGCAGGCAGGGG
GCGTGCTGTGCTTTGGCGCATTACTGTCCTTCGTTTCGCCCTTCATTTAG
CCTGCCCCCATTCGTAACCTAAGCCGAAGCCCCCACCATTATATGTGTTC
ACACATTTAAATGTGCCATTCGTACTTCTATCCCTTATTTCCACTCCCCG
GCCCAACACAGAACCTCCTTCCCGTTTGTGCACCCTTCCATCCGGTCCAC
CATGACTATCCCGTGCACCCCCTTCACTGCCAGCGCATACACATCCACCT
CTTCCAACGCTGCCAGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACC
ATCGATGAGCATGAAAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTC
CTGGGAGTCTATCTCTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAG
TCAAGAACTACGCCGCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCA
TCGGGCGCTGCGAAACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCC
TGAAAAGAAGGACAATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCT
TGGAATGCTGGGCCAAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTG
ATGAAGACCCGCACCAACGAACAGGTTAGGACGCACGCCCAGAAGTATTT
TGCCAAGCTTAATCAGCTCCGTACCTGTGGATACGAAGGCAACTATGCCA
TGGACGGTACGCGGCATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGG
CAAGGTCGCATCTCGCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAG
CTCTCGCAGCGTGGTGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGG
CTCGTCTTCAAGGCGGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCA
GGGGAGGGTTTGGGGCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGA
GAAGGATGGGAGCTTGCTGCAGCTCGCCATCACCAGCTACACCACTCGCA
GCGGCCGTGTGGTCACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAA
GCTCAAGCTACCGCGGCCATGATAGGGGACAAGGCCGAGGGCCGCACAAT
ACAGGAGGGCGAGGACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTG
CGGCTCCGGTGGGACTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAG
GGAGAGGAGGTTATGAACGTTTTCGATCACAATTATGCGGAAGATCAGCA
CGATGCCAAGCAGGAGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGA
TAGACTCCGCCGCAGAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCG
GGCACGGTTGCCGACATTATGACCTCTCTTACCGTGGACTCCCTTGGCTT
CCTGCATTGGGATGAGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGC
CAAAGTCGGACGGGTATAACGCAGAGGAGGACGACAACAACAGCCTGACA
CGCCCGCCTACGTCACCCGCTGCGGCTACCGCGCCCTGGGCGGCCGAAGA
AGATGATTTTTGGAAGGAAGCGGATGAGGAAAAGGAAGAGGGGGAAGCAA
CAGCCAGCAAAGATGGTGCGGCGGTGTTTCAGATTTGA

protein sequence of jgi.p|Nanoce1779_2|630819

>mRNA_5133-protein ID=mRNA_5133-protein|Name=jgi.p|Nanoce1779_2|630819|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MTIPCTPFTASAYTSTSSNAASGLPPFNQIQWTIDEHENFLEGLKEFGRS
WESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDP
EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYF
AKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTS
SRSVVKKRGNRQGKALARLQGGSSTLRRVASQAGEGLGQDQAEAEKEGEE
KDGSLLQLAITSYTTRSGRVVTWAQPLQHTLTQAQATAAMIGDKAEGRTI
QEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQH
DAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGF
LHWDEAGSVSEGWTVLPKSDGYNAEEDDNNSLTRPPTSPAAATAPWAAEE
DDFWKEADEEKEEGEATASKDGAAVFQI*

mRNA from alignment at scaffold_12:543579..545770+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5133 ID=mRNA_5133|Name=jgi.p|Nanoce1779_2|630819|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at scaffold_12:543579..545770+ (Nannochloropsis oceanica)
CATCGTTTGGCGCCCTGAGGCTTTCCATTCCGCCCCTAAGCAACACGACG
CGCCAAGCAAACCAGTACCAACCATGCCTTTGAATGCACTGCGCCACACG
CGCACTATGACTTACTTTCACACTCCTCTATGCCTCTGATGCATCATGGA
CCAATTATACGAGGCGCACTTATTGCGTGCGTCCCTGTGGTCGTCCCCAA
GAGGAATAGAGAATGGAATAGGGGCCCCACAAGGGAGGGAAATGGTAAGG
TAGCTCTGCTTCTATTCCCGCAACGGTGATCCGAACCAAATTAATGCTTT
TTAATCCATTCACTTTACAGCCTTGGACAGCATGGCAAGGCAGGCAGGGG
GCGTGCTGTGCTTTGGCGCATTACTGTCCTTCGTTTCGCCCTTCATTTAG
CCTGCCCCCATTCGTAACCTAAGCCGAAGCCCCCACCATTATATGTGTTC
ACACATTTAAATGTGCCATTCGTACTTCTATCCCTTATTTCCACTCCCCG
GCCCAACACAGAACCTCCTTCCCGTTTGTGCACCCTTCCATCCGGTCCAC
CATGACTATCCCGTGCACCCCCTTCACTGCCAGCGCATACACATCCACCT
CTTCCAACGCTGCCAGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACC
ATCGATGAGCATGAAAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTC
CTGGGAGTCTATCTCTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAG
TCAAGAACTACGCCGCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCA
TCGGGCGCTGCGAAACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCC
TGAAAAGAAGGACAATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCT
TGGAATGCTGGGCCAAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTG
ATGAAGACCCGCACCAACGAACAGGTTAGGACGCACGCCCAGAAGTATTT
TGCCAAGCTTAATCAGCTCCGTACCTGTGGATACGAAGGCAACTATGCCA
TGGACGGTACGCGGCATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGG
CAAGGTCGCATCTCGCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAG
CTCTCGCAGCGTGGTGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGG
CTCGTCTTCAAGGCGGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCA
GGGGAGGGTTTGGGGCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGA
GAAGGATGGGAGCTTGCTGCAGCTCGCCATCACCAGCTACACCACTCGCA
GCGGCCGTGTGGTCACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAA
GCTCAAGCTACCGCGGCCATGATAGGGGACAAGGCCGAGGGCCGCACAAT
ACAGGAGGGCGAGGACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTG
CGGCTCCGGTGGGACTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAG
GGAGAGGAGGTTATGAACGTTTTCGATCACAATTATGCGGAAGATCAGCA
CGATGCCAAGCAGGAGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGA
TAGACTCCGCCGCAGAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCG
GGCACGGTTGCCGACATTATGACCTCTCTTACCGTGGACTCCCTTGGCTT
CCTGCATTGGGATGAGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGC
CAAAGGTGGCGGATGAGCGTAACGATATGAGCTCGCTCTCTGCTGCCACA
ATAGCCACGCACGGCCCGGCGGAATTGATGAGCAGCACTAGCAGCAGCGG
TAGCACGGTGAGCAGCAGCAGTAGCAGCAGCAGCAGATCCGAAGGAGCGA
CGCAGCGAGACTCAATGCTCTTGATGATGAGCAGCGCTGATGGCAGCCTT
TTGTGGGAGTCGGACGGGTATAACGCAGAGGAGGACGACAACAACAGCCT
GACACGCCCGCCTACGTCACCCGCTGCGGCTACCGCGCCCTGGGCGGCCG
AAGAAGATGATTTTTGGAAGGAAGCGGATGAGGAAAAGGAAGAGGGGGAA
GCAACAGCCAGCAAAGATGGTGCGGCGGTGTTTCAGATTTGA

Coding sequence (CDS) from alignment at scaffold_12:543579..545770+

>mRNA_5133 ID=mRNA_5133|Name=jgi.p|Nanoce1779_2|630819|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_12:543579..545770+ (Nannochloropsis oceanica)
ATGACTATCCCGTGCACCCCCTTCACTGCCAGCGCATACACATCCACCTC
TTCCAACGCTGCCAGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACCA
TCGATGAGCATGAAAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTCC
TGGGAGTCTATCTCTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAGT
CAAGAACTACGCCGCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCAT
CGGGCGCTGCGAAACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCCT
GAAAAGAAGGACAATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCTT
GGAATGCTGGGCCAAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTGA
TGAAGACCCGCACCAACGAACAGGTTAGGACGCACGCCCAGAAGTATTTT
GCCAAGCTTAATCAGCTCCGTACCTGTGGATACGAAGGCAACTATGCCAT
GGACGGTACGCGGCATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGGC
AAGGTCGCATCTCGCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAGC
TCTCGCAGCGTGGTGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGGC
TCGTCTTCAAGGCGGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCAG
GGGAGGGTTTGGGGCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGAG
AAGGATGGGAGCTTGCTGCAGCTCGCCATCACCAGCTACACCACTCGCAG
CGGCCGTGTGGTCACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAAG
CTCAAGCTACCGCGGCCATGATAGGGGACAAGGCCGAGGGCCGCACAATA
CAGGAGGGCGAGGACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTGC
GGCTCCGGTGGGACTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAGG
GAGAGGAGGTTATGAACGTTTTCGATCACAATTATGCGGAAGATCAGCAC
GATGCCAAGCAGGAGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGAT
AGACTCCGCCGCAGAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCGG
GCACGGTTGCCGACATTATGACCTCTCTTACCGTGGACTCCCTTGGCTTC
CTGCATTGGGATGAGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGCC
AAAGTCGGACGGGTATAACGCAGAGGAGGACGACAACAACAGCCTGACAC
GCCCGCCTACGTCACCCGCTGCGGCTACCGCGCCCTGGGCGGCCGAAGAA
GATGATTTTTGGAAGGAAGCGGATGAGGAAAAGGAAGAGGGGGAAGCAAC
AGCCAGCAAAGATGGTGCGGCGGTGTTTCAGATTTGAATGACTATCCCGT
GCACCCCCTTCACTGCCAGCGCATACACATCCACCTCTTCCAACGCTGCC
AGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACCATCGATGAGCATGA
AAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCT
CTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCC
GCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAA
ACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACA
ATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCC
AAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCAC
CAACGAACAGGTTAGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATC
AGCTCCGTACCTGTGGATACGAAGGCAACTATGCCATGGACGGTACGCGG
CATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTC
GCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGG
TGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGC
GGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGG
GCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCT
TGCTGCAGCTCGCCATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTC
ACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGC
GGCCATGATAGGGGACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGG
ACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGA
CTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTAT
GAACGTTTTCGATCACAATTATGCGGAAGATCAGCACGATGCCAAGCAGG
AGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCA
GAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGA
CATTATGACCTCTCTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATG
AGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGCCAAAGTCGGACGGG
TATAACGCAGAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTC
ACCCGCTGCGGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGA
AGGAAGCGGATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGAT
GGTGCGGCGGTGTTTCAGATTTGA

Synonyms

Publications