jgi.p|Nanoce1779_2|591491, mRNA_5130 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591491
Unique NamemRNA_5130
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length907
Alignment locationscaffold_12:534437..535343 -

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Properties
Property NameValue
TranscriptId591577
TrackFilteredModels2
ProteinId591491
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:534437..535343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591491gene_5130Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591491mRNA_5130-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5130CDS_5130Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5130 ID=mRNA_5130|Name=jgi.p|Nanoce1779_2|591491|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
ACATCAGCCATTTTATGGTTGTACTCCGGGAGTGTTGAACAACCGCCACT
GCCATCACCTCTATCGACAGGCTTTGTTGCCCCCTCCGATCAAACGAAGG
ACAAAGATAAGAATGCGCACCTCTGAGCTGCTTGCCGTTCTCACGCTGGG
CTGCTCCTGCCTCCATCATGCCATCGCCTTTATGGCAGCCTCTCCCTTGT
CATCCGCATCTCGGCATGCTGGGACGTTTGCCCGCAAAGGCGTGATGCTT
AAGCCTACCTTAATTGTCCATCACACGGGCGGAGAGCTGGCGGAGGACAA
AAAGGAAGCGTTTCTGAAGGAAGCAAGCAAGACTGTTAGTACTACCCTTG
GCAAAGCAGAGAGCTACGTTATGGTGTCCTTAAACCCGTCCGCCATGTCC
TTTGGCGGCACACTAGGCAATGCTGCCTTTCTTTACCTTGCTAGCATTGG
TCACATTGGACCAGAGACGAACAAACCTGCTGCCAAGGAATTGTCTGCGT
TGGTCGAGAAGCACCTGGGGATTCCTAGCGACCGTGTTTTTATCCAATTT
TCCGATGCGGCCGCTGCAAATTTTGCATGGCGAGGGAATACGTTTGGTTG
AGGGACGCAGCCCTTTGTGTCATGAGCACCCTGCCTTGACATGCCCCTGG
CTGACATGCTCCTGGCTGCGCAAGCAACGGTATATTTGGATACAGAGGTA
CTTGAATGGTTGGGTATGCCTCGATGGGTCGCTGAGATTAAGATTCTTCA
AAAGATGGCTTGGATTTGTCGTCCTCTATGTAGGGGTCTTAGCGCGAGAG
AGGGGAAGAGAGTGTTGGTTGGTGGTACAGAGCAGATATAGAATGAAGGG
AGAAAAAACAGAGCAACAGAGAATGGAAGACCACGCCTTGAATGAGAACC
TATCTTT
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protein sequence of jgi.p|Nanoce1779_2|591491

>mRNA_5130-protein ID=mRNA_5130-protein|Name=jgi.p|Nanoce1779_2|591491|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MRTSELLAVLTLGCSCLHHAIAFMAASPLSSASRHAGTFARKGVMLKPTL
IVHHTGGELAEDKKEAFLKEASKTVSTTLGKAESYVMVSLNPSAMSFGGT
LGNAAFLYLASIGHIGPETNKPAAKELSALVEKHLGIPSDRVFIQFSDAA
AANFAWRGNTFG*
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mRNA from alignment at scaffold_12:534437..535343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5130 ID=mRNA_5130|Name=jgi.p|Nanoce1779_2|591491|organism=Nannochloropsis oceanica|type=mRNA|length=907bp|location=Sequence derived from alignment at scaffold_12:534437..535343- (Nannochloropsis oceanica)
ACATCAGCCATTTTATGGTTGTACTCCGGGAGTGTTGAACAACCGCCACT
GCCATCACCTCTATCGACAGGCTTTGTTGCCCCCTCCGATCAAACGAAGG
ACAAAGATAAGAATGCGCACCTCTGAGCTGCTTGCCGTTCTCACGCTGGG
CTGCTCCTGCCTCCATCATGCCATCGCCTTTATGGCAGCCTCTCCCTTGT
CATCCGCATCTCGGCATGCTGGGACGTTTGCCCGCAAAGGCGTGATGCTT
AAGCCTACCTTAATTGTCCATCACACGGGCGGAGAGCTGGCGGAGGACAA
AAAGGAAGCGTTTCTGAAGGAAGCAAGCAAGACTGTTAGTACTACCCTTG
GCAAAGCAGAGAGCTACGTTATGGTGTCCTTAAACCCGTCCGCCATGTCC
TTTGGCGGCACACTAGGCAATGCTGCCTTTCTTTACCTTGCTAGCATTGG
TCACATTGGACCAGAGACGAACAAACCTGCTGCCAAGGAATTGTCTGCGT
TGGTCGAGAAGCACCTGGGGATTCCTAGCGACCGTGTTTTTATCCAATTT
TCCGATGCGGCCGCTGCAAATTTTGCATGGCGAGGGAATACGTTTGGTTG
AGGGACGCAGCCCTTTGTGTCATGAGCACCCTGCCTTGACATGCCCCTGG
CTGACATGCTCCTGGCTGCGCAAGCAACGGTATATTTGGATACAGAGGTA
CTTGAATGGTTGGGTATGCCTCGATGGGTCGCTGAGATTAAGATTCTTCA
AAAGATGGCTTGGATTTGTCGTCCTCTATGTAGGGGTCTTAGCGCGAGAG
AGGGGAAGAGAGTGTTGGTTGGTGGTACAGAGCAGATATAGAATGAAGGG
AGAAAAAACAGAGCAACAGAGAATGGAAGACCACGCCTTGAATGAGAACC
TATCTTT
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Coding sequence (CDS) from alignment at scaffold_12:534437..535343-

>mRNA_5130 ID=mRNA_5130|Name=jgi.p|Nanoce1779_2|591491|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_12:534437..535343- (Nannochloropsis oceanica)
ATGCGCACCTCTGAGCTGCTTGCCGTTCTCACGCTGGGCTGCTCCTGCCT
CCATCATGCCATCGCCTTTATGGCAGCCTCTCCCTTGTCATCCGCATCTC
GGCATGCTGGGACGTTTGCCCGCAAAGGCGTGATGCTTAAGCCTACCTTA
ATTGTCCATCACACGGGCGGAGAGCTGGCGGAGGACAAAAAGGAAGCGTT
TCTGAAGGAAGCAAGCAAGACTGTTAGTACTACCCTTGGCAAAGCAGAGA
GCTACGTTATGGTGTCCTTAAACCCGTCCGCCATGTCCTTTGGCGGCACA
CTAGGCAATGCTGCCTTTCTTTACCTTGCTAGCATTGGTCACATTGGACC
AGAGACGAACAAACCTGCTGCCAAGGAATTGTCTGCGTTGGTCGAGAAGC
ACCTGGGGATTCCTAGCGACCGTGTTTTTATCCAATTTTCCGATGCGGCC
GCTGCAAATTTTGCATGGCGAGGGAATACGTTTGGTTGA
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Synonyms
Publications