jgi.p|Nanoce1779_2|591485, mRNA_5128 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591485
Unique NamemRNA_5128
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1150
Alignment locationscaffold_12:530567..531716 -

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Properties
Property NameValue
TranscriptId591571
TrackFilteredModels2
ProteinId591485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:530567..531716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591485gene_5128Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591485mRNA_5128-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5128CDS_5128Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Nanoce1779_2|591485|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
ACAGTCGTCATCACGCATGCACCTACTATTACGACGCAGCGCCAGCGCGG
CAGTCACTGTAGCAGGCAGAAACAGCAACAATGCCGCGGTCCGGTGCTTC
ACCGCGGTGGGTGGAACCAGGGGAGGACCCAAGGCAGGGGGAGGCAAGAA
GGACGGCAAGAACGATGGCGGCACAGCAGCAGCAGCCGCGGCCGTGACCA
AGGAGAAAGATCCTTTTGGCTTCAGAGAGCTTAAGGCCAAGTACAAGGGT
GCACGGGGGGGGGCAAGTTTCCCCGACTTGCGGGATGAGGACGTGGCAAC
GATGGAAGCGGAGATGGAAAAAACAGGGAGGGTGACGGCGCCGAGGAACG
TGTTTGGGATAGACCATATCAGCAAGGAGATGACCCAAGCATGGGAGGAA
GGCATGTTACCCCCGCAGTTGTACCCGCCCGAGTCGGCGCAGGCACCCGG
ATTGTAAGTGTAGGAGTTGTTTGTGTATGTACATATATGATTTTTCGGTT
GCCGTTTCACCTCAGATATGCTCACCCTCCTCGGCCTCTCCCCCCTCTCT
CTATGATAATCACCGTATCTCACTCTCTCTATCATCTCTTCCTCCCTTTC
TTCCATCCTCCCTCCCCCAAAACAGGGAAGGCCCAGAGGATCTCTACTGG
CCAGGCAATCTTGAGACCACCCTCCCCCGCGACAGCGACCGCCTCTACCC
GTCCAAATCAGATCGCGCATTCTCCCCAGAAGAAATGCAAGAAATGTACG
AAGCAGACATCGGTGGAGTCTGCCAGGGGAAGAAGCAACGGCGTGGCTCC
CAGCCATTGAGGTGCAAAAAAGTAGATTTGAATGAAGTGGTGTTCACGAA
TGTGGCAGTGTTGGCTCAGTTTTTGTCGCCTGTGGGTATGATTAAGCCTC
GGCGAATGTCTGGATTGTGTGCTAAATGCCAACGAAAGGTGGCGAGGACC
GTGAAGCAAGCAAGACACCTGGGAGTGGTGCCTCATACGAGTGGAGTGGA
TCTGTACCAGCGGCTGCAGGGTGAGGGGGAGAAGGCAGGCGGCTTGGTGA
GGGCGCCGTTGTTGTCGAGGAGAGGAGGGGAGGGAGGAGGAAGGGGTGGG
ATGGCAGAGGAGGAATTACTAAAGAAGATTCCGAGTTTGACAATATAGGC
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protein sequence of jgi.p|Nanoce1779_2|591485

>mRNA_5128-protein ID=mRNA_5128-protein|Name=jgi.p|Nanoce1779_2|591485|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MYIYDFSVAVSPQICSPSSASPPSLYDNHRISLSLSSLPPFLPSSLPQNR
EGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQ
GKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAK
CQRKVARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRG
GEGGGRGGMAEEELLKKIPSLTI*
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mRNA from alignment at scaffold_12:530567..531716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Nanoce1779_2|591485|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_12:530567..531716- (Nannochloropsis oceanica)
ACAGTCGTCATCACGCATGCACCTACTATTACGACGCAGCGCCAGCGCGG
CAGTCACTGTAGCAGGCAGAAACAGCAACAATGCCGCGGTCCGGTGCTTC
ACCGCGGTGGGTGGAACCAGGGGAGGACCCAAGGCAGGGGGAGGCAAGAA
GGACGGCAAGAACGATGGCGGCACAGCAGCAGCAGCCGCGGCCGTGACCA
AGGAGAAAGATCCTTTTGGCTTCAGAGAGCTTAAGGCCAAGTACAAGGGT
GCACGGGGGGGGGCAAGTTTCCCCGACTTGCGGGATGAGGACGTGGCAAC
GATGGAAGCGGAGATGGAAAAAACAGGGAGGGTGACGGCGCCGAGGAACG
TGTTTGGGATAGACCATATCAGCAAGGAGATGACCCAAGCATGGGAGGAA
GGCATGTTACCCCCGCAGTTGTACCCGCCCGAGTCGGCGCAGGCACCCGG
ATTGTAAGTGTAGGAGTTGTTTGTGTATGTACATATATGATTTTTCGGTT
GCCGTTTCACCTCAGATATGCTCACCCTCCTCGGCCTCTCCCCCCTCTCT
CTATGATAATCACCGTATCTCACTCTCTCTATCATCTCTTCCTCCCTTTC
TTCCATCCTCCCTCCCCCAAAACAGGGAAGGCCCAGAGGATCTCTACTGG
CCAGGCAATCTTGAGACCACCCTCCCCCGCGACAGCGACCGCCTCTACCC
GTCCAAATCAGATCGCGCATTCTCCCCAGAAGAAATGCAAGAAATGTACG
AAGCAGACATCGGTGGAGTCTGCCAGGGGAAGAAGCAACGGCGTGGCTCC
CAGCCATTGAGGTGCAAAAAAGTAGATTTGAATGAAGTGGTGTTCACGAA
TGTGGCAGTGTTGGCTCAGTTTTTGTCGCCTGTGGGTATGATTAAGCCTC
GGCGAATGTCTGGATTGTGTGCTAAATGCCAACGAAAGGTGGCGAGGACC
GTGAAGCAAGCAAGACACCTGGGAGTGGTGCCTCATACGAGTGGAGTGGA
TCTGTACCAGCGGCTGCAGGGTGAGGGGGAGAAGGCAGGCGGCTTGGTGA
GGGCGCCGTTGTTGTCGAGGAGAGGAGGGGAGGGAGGAGGAAGGGGTGGG
ATGGCAGAGGAGGAATTACTAAAGAAGATTCCGAGTTTGACAATATAGGC
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Coding sequence (CDS) from alignment at scaffold_12:530567..531716-

>mRNA_5128 ID=mRNA_5128|Name=jgi.p|Nanoce1779_2|591485|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_12:530567..531716- (Nannochloropsis oceanica)
ATGTACATATATGATTTTTCGGTTGCCGTTTCACCTCAGATATGCTCACC
CTCCTCGGCCTCTCCCCCCTCTCTCTATGATAATCACCGTATCTCACTCT
CTCTATCATCTCTTCCTCCCTTTCTTCCATCCTCCCTCCCCCAAAACAGG
GAAGGCCCAGAGGATCTCTACTGGCCAGGCAATCTTGAGACCACCCTCCC
CCGCGACAGCGACCGCCTCTACCCGTCCAAATCAGATCGCGCATTCTCCC
CAGAAGAAATGCAAGAAATGTACGAAGCAGACATCGGTGGAGTCTGCCAG
GGGAAGAAGCAACGGCGTGGCTCCCAGCCATTGAGGTGCAAAAAAGTAGA
TTTGAATGAAGTGGTGTTCACGAATGTGGCAGTGTTGGCTCAGTTTTTGT
CGCCTGTGGGTATGATTAAGCCTCGGCGAATGTCTGGATTGTGTGCTAAA
TGCCAACGAAAGGTGGCGAGGACCGTGAAGCAAGCAAGACACCTGGGAGT
GGTGCCTCATACGAGTGGAGTGGATCTGTACCAGCGGCTGCAGGGTGAGG
GGGAGAAGGCAGGCGGCTTGGTGAGGGCGCCGTTGTTGTCGAGGAGAGGA
GGGGAGGGAGGAGGAAGGGGTGGGATGGCAGAGGAGGAATTACTAAAGAA
GATTCCGAGTTTGACAATATAG
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Synonyms
Publications