jgi.p|Nanoce1779_2|591481, mRNA_5127 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591481
Unique Name	mRNA_5127
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	890
Alignment location	scaffold_12:529562..530451 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591567
Track	FilteredModels2
ProteinId	591481

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:529562..530451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591481	gene_5127	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591481	mRNA_5127-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5127	CDS_5127	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:529562..530451+
coding sequence from alignment at scaffold_12:529562..530451+

mRNA sequence

>mRNA_5127 ID=mRNA_5127|Name=jgi.p|Nanoce1779_2|591481|organism=Nannochloropsis oceanica|type=mRNA|length=890bp
GGCGATGCATCCAGCGACGTCACAGTCTTGCCCTAAGGAAAATTCGAAGC
ACATGCGCACCGCTTGCGTTCGTGTGCCACACTATCCCAACAGCGAAAGC
GCACTCTCCCACACACATGTTTAATGTCCAAGGCTTCTTTTAACCTGTGC
TTCCCCGCCATTTTATCACAGGTGTCATCACCAGCGTCGGTCATGAAGCT
CCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGGATTTGCCT
GCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTGCTCCCAGT
ACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAAAATAAGCT
GGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGCAGCTACCG
TGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGTTGGCGGTA
GCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGTGGTTTGCC
GGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAAAAAAGGGTAG
GGTGTAGAAAGAGCAGGACGCGGAATAGAAGGAAGGAGAAACTGATTACC
CTTGATGTTGAGCTTGGGATGGCGGAATGACGGGAAGAGTAGGGACGATG
AAGCAACTGCCCGAGTGACAGGTAGACGAAGAGAGAACAATTTTGCACAT
AGGTGTAGTGACGAGAAATGTGTCTTGAGGGATTGAAGGTAGAGGAAGAA
GAAAAAAGTATATATTAGATCCTTGCCTGCATACACATGTCCACTTGCCC
TTTTTTGTTTCTGGGTGACAATTCTTCCACTCAAATGAGTTTCACGTTCA
GTTTCACGTGGCAAAGAAATAAAATAAAACGTACTGACAA

protein sequence of jgi.p|Nanoce1779_2|591481

>mRNA_5127-protein ID=mRNA_5127-protein|Name=jgi.p|Nanoce1779_2|591481|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSKASFNLCFPAILSQVSSPASVMKLRNLTLLHLLVIFVGFACLFSSTTV
ADSAPAAPSTPTDSAASATGTGQNKLGEDFTDFAVPERAAATVGESLGFA
ALVLGVLAVAGVNTYYKIKSSPGGLPGYSQAIYMREQQ*

mRNA from alignment at scaffold_12:529562..530451+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5127 ID=mRNA_5127|Name=jgi.p|Nanoce1779_2|591481|organism=Nannochloropsis oceanica|type=mRNA|length=890bp|location=Sequence derived from alignment at scaffold_12:529562..530451+ (Nannochloropsis oceanica)
GGCGATGCATCCAGCGACGTCACAGTCTTGCCCTAAGGAAAATTCGAAGC
ACATGCGCACCGCTTGCGTTCGTGTGCCACACTATCCCAACAGCGAAAGC
GCACTCTCCCACACACATGTTTAATGTCCAAGGCTTCTTTTAACCTGTGC
TTCCCCGCCATTTTATCACAGGTGTCATCACCAGCGTCGGTCATGAAGCT
CCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGGATTTGCCT
GCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTGCTCCCAGT
ACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAAAATAAGCT
GGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGCAGCTACCG
TGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGTTGGCGGTA
GCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGTGGTTTGCC
GGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAAAAAAGGGTAG
GGTGTAGAAAGAGCAGGACGCGGAATAGAAGGAAGGAGAAACTGATTACC
CTTGATGTTGAGCTTGGGATGGCGGAATGACGGGAAGAGTAGGGACGATG
AAGCAACTGCCCGAGTGACAGGTAGACGAAGAGAGAACAATTTTGCACAT
AGGTGTAGTGACGAGAAATGTGTCTTGAGGGATTGAAGGTAGAGGAAGAA
GAAAAAAGTATATATTAGATCCTTGCCTGCATACACATGTCCACTTGCCC
TTTTTTGTTTCTGGGTGACAATTCTTCCACTCAAATGAGTTTCACGTTCA
GTTTCACGTGGCAAAGAAATAAAATAAAACGTACTGACAA

Coding sequence (CDS) from alignment at scaffold_12:529562..530451+

>mRNA_5127 ID=mRNA_5127|Name=jgi.p|Nanoce1779_2|591481|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_12:529562..530451+ (Nannochloropsis oceanica)
ATGTCCAAGGCTTCTTTTAACCTGTGCTTCCCCGCCATTTTATCACAGGT
GTCATCACCAGCGTCGGTCATGAAGCTCCGCAACCTGACCCTCTTACACC
TCCTGGTTATCTTCGTGGGATTTGCCTGCCTCTTTTCCAGCACCACAGTC
GCAGACTCAGCCCCCGCTGCTCCCAGTACCCCCACTGATTCCGCTGCCTC
TGCTACTGGGACTGGGCAAAATAAGCTGGGGGAGGATTTTACCGACTTTG
CCGTGCCCGAGCGAGCAGCAGCTACCGTGGGCGAGAGCTTGGGCTTTGCG
GCCTTGGTTCTGGGGGTGTTGGCGGTAGCGGGTGTGAACACGTATTACAA
GATCAAGAGCAGCCCGGGTGGTTTGCCGGGGTATAGTCAGGCGATTTATA
TGCGGGAACAACAATAA

Synonyms

Publications