jgi.p|Nanoce1779_2|591477, mRNA_5126 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591477
Unique NamemRNA_5126
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length994
Alignment locationscaffold_12:528428..529421 -

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Properties
Property NameValue
TranscriptId591563
TrackFilteredModels2
ProteinId591477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:528428..529421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591477gene_5126Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591477mRNA_5126-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5126CDS_5126Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Nanoce1779_2|591477|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
AGCCCGTGCACAGGCCGTGCGCACTCGACTCGAGAGAGCCACTGGTCTTA
TTGGCCCATGCAATCTTCGTCCTCCGCCTCCTCTTCTTCCTTGCCACCAC
ATCCGCCGTATCTGCACCTCCCAGCGACACAGCTGCGGGGCTGGTGCTTG
CATGACTTCGAGATCGGCCGTCCCTTGGGCAAGGGAAAATTCGGCACCGT
GTACCTGGCCCGGGAACGCCGCAGCAAGTATGTTGTAGCCCTCAAGGTGT
TGCGCAAGACCCAGTTGCTCAAGGGCGGAGTGGAGCACCAACTGCGCCGG
GAAATCGAGATCCAGACGCATTTAAGACATCGCAACATCCTGCGAATGTT
TGGGTATTTCTTTGATGAGCGACGAATCTACTTGATTCTGGAATATGCCC
CGCGGGGAGAGCTTTATAAGCAGCTGACGGCCAAGGGCAAGTTCTCGGAG
CGGCTCTCCGCGCAGTATTTGTTGGAGTTGTCGCAGGCCTTGGCGTTCTG
CCATACCAAGCATGTGATCCATCGGGACATCAAGCCTGAGAATCTCCTGG
TGGGTCACAAAGGTGAATTGAAAATTGCTGATTTCGGGTGGTCTGTGCAT
GCGCCATCGTCGAAGCGGAATACGTTGTGTGGAACTCTGGATTACTTACC
CCCTGAGATGATTGAAGGACGGGCGCACGATGCCATGGTGGACGTCTGGA
GTCTTGGAGTATTGCTGTATGAATTTTTGGTGGGCCACCCGCCGTTTGAG
GCGGAGGGACACTCGGCGACGTATCGAAGGATTGCGAGGGTGGACCTGCA
TTTTCCGAGGGACATGTCGGAGGGGGCCCGGGACCTGATTTCGCGGTTGT
TGAAAAAGGACCCCCGGGTGCGGATTTCATTGACTGAGATCTCCCAGCAT
CCGTGGATTGTGCAGCAGACGGCGGGGAGGGCGTCGCCGTCGGCTTTGGG
AAGGGCAGCGTAGAGGGCGTCGGGAGTGGCGGGGGCGGCAGGGA
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protein sequence of jgi.p|Nanoce1779_2|591477

>mRNA_5126-protein ID=mRNA_5126-protein|Name=jgi.p|Nanoce1779_2|591477|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MQSSSSASSSSLPPHPPYLHLPATQLRGWCLHDFEIGRPLGKGKFGTVYL
ARERRSKYVVALKVLRKTQLLKGGVEHQLRREIEIQTHLRHRNILRMFGY
FFDERRIYLILEYAPRGELYKQLTAKGKFSERLSAQYLLELSQALAFCHT
KHVIHRDIKPENLLVGHKGELKIADFGWSVHAPSSKRNTLCGTLDYLPPE
MIEGRAHDAMVDVWSLGVLLYEFLVGHPPFEAEGHSATYRRIARVDLHFP
RDMSEGARDLISRLLKKDPRVRISLTEISQHPWIVQQTAGRASPSALGRA
A*
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mRNA from alignment at scaffold_12:528428..529421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Nanoce1779_2|591477|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at scaffold_12:528428..529421- (Nannochloropsis oceanica)
AGCCCGTGCACAGGCCGTGCGCACTCGACTCGAGAGAGCCACTGGTCTTA
TTGGCCCATGCAATCTTCGTCCTCCGCCTCCTCTTCTTCCTTGCCACCAC
ATCCGCCGTATCTGCACCTCCCAGCGACACAGCTGCGGGGCTGGTGCTTG
CATGACTTCGAGATCGGCCGTCCCTTGGGCAAGGGAAAATTCGGCACCGT
GTACCTGGCCCGGGAACGCCGCAGCAAGTATGTTGTAGCCCTCAAGGTGT
TGCGCAAGACCCAGTTGCTCAAGGGCGGAGTGGAGCACCAACTGCGCCGG
GAAATCGAGATCCAGACGCATTTAAGACATCGCAACATCCTGCGAATGTT
TGGGTATTTCTTTGATGAGCGACGAATCTACTTGATTCTGGAATATGCCC
CGCGGGGAGAGCTTTATAAGCAGCTGACGGCCAAGGGCAAGTTCTCGGAG
CGGCTCTCCGCGCAGTATTTGTTGGAGTTGTCGCAGGCCTTGGCGTTCTG
CCATACCAAGCATGTGATCCATCGGGACATCAAGCCTGAGAATCTCCTGG
TGGGTCACAAAGGTGAATTGAAAATTGCTGATTTCGGGTGGTCTGTGCAT
GCGCCATCGTCGAAGCGGAATACGTTGTGTGGAACTCTGGATTACTTACC
CCCTGAGATGATTGAAGGACGGGCGCACGATGCCATGGTGGACGTCTGGA
GTCTTGGAGTATTGCTGTATGAATTTTTGGTGGGCCACCCGCCGTTTGAG
GCGGAGGGACACTCGGCGACGTATCGAAGGATTGCGAGGGTGGACCTGCA
TTTTCCGAGGGACATGTCGGAGGGGGCCCGGGACCTGATTTCGCGGTTGT
TGAAAAAGGACCCCCGGGTGCGGATTTCATTGACTGAGATCTCCCAGCAT
CCGTGGATTGTGCAGCAGACGGCGGGGAGGGCGTCGCCGTCGGCTTTGGG
AAGGGCAGCGTAGAGGGCGTCGGGAGTGGCGGGGGCGGCAGGGA
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Coding sequence (CDS) from alignment at scaffold_12:528428..529421-

>mRNA_5126 ID=mRNA_5126|Name=jgi.p|Nanoce1779_2|591477|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_12:528428..529421- (Nannochloropsis oceanica)
ATGCAATCTTCGTCCTCCGCCTCCTCTTCTTCCTTGCCACCACATCCGCC
GTATCTGCACCTCCCAGCGACACAGCTGCGGGGCTGGTGCTTGCATGACT
TCGAGATCGGCCGTCCCTTGGGCAAGGGAAAATTCGGCACCGTGTACCTG
GCCCGGGAACGCCGCAGCAAGTATGTTGTAGCCCTCAAGGTGTTGCGCAA
GACCCAGTTGCTCAAGGGCGGAGTGGAGCACCAACTGCGCCGGGAAATCG
AGATCCAGACGCATTTAAGACATCGCAACATCCTGCGAATGTTTGGGTAT
TTCTTTGATGAGCGACGAATCTACTTGATTCTGGAATATGCCCCGCGGGG
AGAGCTTTATAAGCAGCTGACGGCCAAGGGCAAGTTCTCGGAGCGGCTCT
CCGCGCAGTATTTGTTGGAGTTGTCGCAGGCCTTGGCGTTCTGCCATACC
AAGCATGTGATCCATCGGGACATCAAGCCTGAGAATCTCCTGGTGGGTCA
CAAAGGTGAATTGAAAATTGCTGATTTCGGGTGGTCTGTGCATGCGCCAT
CGTCGAAGCGGAATACGTTGTGTGGAACTCTGGATTACTTACCCCCTGAG
ATGATTGAAGGACGGGCGCACGATGCCATGGTGGACGTCTGGAGTCTTGG
AGTATTGCTGTATGAATTTTTGGTGGGCCACCCGCCGTTTGAGGCGGAGG
GACACTCGGCGACGTATCGAAGGATTGCGAGGGTGGACCTGCATTTTCCG
AGGGACATGTCGGAGGGGGCCCGGGACCTGATTTCGCGGTTGTTGAAAAA
GGACCCCCGGGTGCGGATTTCATTGACTGAGATCTCCCAGCATCCGTGGA
TTGTGCAGCAGACGGCGGGGAGGGCGTCGCCGTCGGCTTTGGGAAGGGCA
GCGTAG
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Synonyms
Publications