jgi.p|Nanoce1779_2|591469, mRNA_5124 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591469
Unique Name	mRNA_5124
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1986
Alignment location	scaffold_12:521730..523715 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591555
Track	FilteredModels2
ProteinId	591469

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:521730..523715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591469	gene_5124	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591469	mRNA_5124-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5124	CDS_5124	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:521730..523715+
coding sequence from alignment at scaffold_12:521730..523715+

mRNA sequence

>mRNA_5124 ID=mRNA_5124|Name=jgi.p|Nanoce1779_2|591469|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp
ACAGCTGCACAATATAAAAATGGCGGACGTCATGCAGCCCGTGGCGGCGA
CCCAGACACCGGTGGCTGCCATTTGCTGCATGTGCGCCATCAACATCCAG
CCCAACCCCACCAACATGTGCCTGCAGTGTCTTCGGACCCAAGTCAACAT
TGCCACGGGTCTGTCCACGCGGGTGACCATGCACCAATGCCGTGGCTGCC
TCAAGTACATGGGCGGCTCGGGTGGAACGGGCTGGTCGCACTACGAGGCC
GAGTCTCGGGAACTGATGGCCGTGTGCTTGCGCAAGGTGGCGGGCCTGAA
TCGCTTGCGCCTGATTGACGCCGGTTGGATTTGGACGGAGCCCCACTCGA
AGCGGCTGAAGCTAAAGCTGACGGTGCAGAAAGAGGTGATGAACGGCGCC
GTCCTCCAAGAGGCGGTCGTTGTGGAGTTTGTTGTGCGCAATCAGCAGTG
CCCGGACTGCTGCGCGTCCTACACCATCGGGGCTTGGGAGGCCATTGTCC
AAGTCCGGCAACGGGTAGACCACAAGCGGACGTTCTTGCACCTTGAGCAA
CTGATTCTGAAGCATAACGCCCATGCGCAGGCCTTGCAGATCCAGGGCTT
CAAGGACGGGATGGATTTTTATTTTGCGAAGCGGAACCAGGCCGCCCGGT
TTACAGAGTTTTTGGAGACCGTTTGCCCTGTCAAGGTGAAGCAGTCCAAG
AAGCTGGTCTCGCAAGACGATCACTCGAACATCTTTAACTACAAGTACAC
GAGTATAATTGAGATAGTGCCTGTGTGCAAGGACGACTTGGTGGTGCTTC
CCACGAAGCTCGCCCAGAACCTGGGGGACATCGCCCGCCTCTCCCTCGTT
CAACGTGTCCTCAATCACCTCCACCTCGTCGATCCCATCACGGGGCAAAC
GGCCGATCTGACCGCCGATAAATTTCACAAGGCTGGGTTTGAATTCCAGG
CGTTGCTATCTGCCGGGCGCTTAGTCCAGTTTATGGTGTTGGGCATCGAG
CCCATCATGATTCCGACCAAGACTTCAGCACCTGTTCGTAGGGCAAATCG
TCATCGACTGGCTGAGGTGGAGGTGGCGCTGATGGCTGATTTAGGGGTGA
ATGACACGCGGTATCGAGTGGTGACGCATTTGGGGCATATTTTGAGGGCT
GGGGATACGGTGTTGGGATATTTGCTAGCGACTGCGTCGATGAATAGTTC
GGATGCGGAGGAGCTGGAAGCGAAGACCCGGGCAGGGCTTCCGGACGTGG
TGCTTGTCCGCAAGGTCTATTCGAGCGAAGGGAGGCTGAAGAAACCAGCG
TGGAAGCTTAAGACATTTGAGGCGGATGAGATGGAGGTGATGGAGGCGAG
GGACGCTGAGAAAGAGGATAGGGAGCTTGAAGAATACAGGCAGCAGTTGG
AGGGTGATAGGGAGATGCGGAGAAATGTGAATTTGTACAAGAATGACAGG
ATGTCGATGATGGCCGCAAACAAGACAACACATATGATGGATGGGGAGGA
GATATTGGTTGGAGAGAAAAAGGCGAAGAAGCGCAAAAGCAAGAAAGGAC
TGACACCCGAGACGCCGCCGACGAAAGCTGGTGGGGAGGAGGTCATGGGC
ATGGGCGAGAGAGAAGAGGTGGACGACGACGACGACGACGACGACGAGGA
TGATGATGAAGCTGTGCAGCTGGATGAGTTGCTGGACGACTTGGAGCTTG
ACGACCCAGACGCGCCCCCTGACGACCATGAAGCGCAAGTGCTGGTGGGA
GAGGGAGCTAGCGCCGGGATCCGGGGGGTCAGTAAGGATTTTGCTTTTAC
CTTTCTACCAGGCAAGGGCCACACTGGCGGTGGAGTTGGAGAGAGTGGAT
CGAAAAAGAGGATGGATGAAGGGGAGGAAGGCTTCGGTGATGACTTGTAG
GGATTCTTGATGTTTAGATGGAAGGGGGAAAAATAACAAAGAAATTACGC
CTGAATAATGTTATCTTCAGCTCGCGGAGGTTTTCC

protein sequence of jgi.p|Nanoce1779_2|591469

>mRNA_5124-protein ID=mRNA_5124-protein|Name=jgi.p|Nanoce1779_2|591469|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MADVMQPVAATQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIATGLST
RVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLID
AGWIWTEPHSKRLKLKLTVQKEVMNGAVLQEAVVVEFVVRNQQCPDCCAS
YTIGAWEAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFKDGMDF
YFAKRNQAARFTEFLETVCPVKVKQSKKLVSQDDHSNIFNYKYTSIIEIV
PVCKDDLVVLPTKLAQNLGDIARLSLVQRVLNHLHLVDPITGQTADLTAD
KFHKAGFEFQALLSAGRLVQFMVLGIEPIMIPTKTSAPVRRANRHRLAEV
EVALMADLGVNDTRYRVVTHLGHILRAGDTVLGYLLATASMNSSDAEELE
AKTRAGLPDVVLVRKVYSSEGRLKKPAWKLKTFEADEMEVMEARDAEKED
RELEEYRQQLEGDREMRRNVNLYKNDRMSMMAANKTTHMMDGEEILVGEK
KAKKRKSKKGLTPETPPTKAGGEEVMGMGEREEVDDDDDDDDEDDDEAVQ
LDELLDDLELDDPDAPPDDHEAQVLVGEGASAGIRGVSKDFAFTFLPGKG
HTGGGVGESGSKKRMDEGEEGFGDDL*

mRNA from alignment at scaffold_12:521730..523715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5124 ID=mRNA_5124|Name=jgi.p|Nanoce1779_2|591469|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at scaffold_12:521730..523715+ (Nannochloropsis oceanica)
ACAGCTGCACAATATAAAAATGGCGGACGTCATGCAGCCCGTGGCGGCGA
CCCAGACACCGGTGGCTGCCATTTGCTGCATGTGCGCCATCAACATCCAG
CCCAACCCCACCAACATGTGCCTGCAGTGTCTTCGGACCCAAGTCAACAT
TGCCACGGGTCTGTCCACGCGGGTGACCATGCACCAATGCCGTGGCTGCC
TCAAGTACATGGGCGGCTCGGGTGGAACGGGCTGGTCGCACTACGAGGCC
GAGTCTCGGGAACTGATGGCCGTGTGCTTGCGCAAGGTGGCGGGCCTGAA
TCGCTTGCGCCTGATTGACGCCGGTTGGATTTGGACGGAGCCCCACTCGA
AGCGGCTGAAGCTAAAGCTGACGGTGCAGAAAGAGGTGATGAACGGCGCC
GTCCTCCAAGAGGCGGTCGTTGTGGAGTTTGTTGTGCGCAATCAGCAGTG
CCCGGACTGCTGCGCGTCCTACACCATCGGGGCTTGGGAGGCCATTGTCC
AAGTCCGGCAACGGGTAGACCACAAGCGGACGTTCTTGCACCTTGAGCAA
CTGATTCTGAAGCATAACGCCCATGCGCAGGCCTTGCAGATCCAGGGCTT
CAAGGACGGGATGGATTTTTATTTTGCGAAGCGGAACCAGGCCGCCCGGT
TTACAGAGTTTTTGGAGACCGTTTGCCCTGTCAAGGTGAAGCAGTCCAAG
AAGCTGGTCTCGCAAGACGATCACTCGAACATCTTTAACTACAAGTACAC
GAGTATAATTGAGATAGTGCCTGTGTGCAAGGACGACTTGGTGGTGCTTC
CCACGAAGCTCGCCCAGAACCTGGGGGACATCGCCCGCCTCTCCCTCGTT
CAACGTGTCCTCAATCACCTCCACCTCGTCGATCCCATCACGGGGCAAAC
GGCCGATCTGACCGCCGATAAATTTCACAAGGCTGGGTTTGAATTCCAGG
CGTTGCTATCTGCCGGGCGCTTAGTCCAGTTTATGGTGTTGGGCATCGAG
CCCATCATGATTCCGACCAAGACTTCAGCACCTGTTCGTAGGGCAAATCG
TCATCGACTGGCTGAGGTGGAGGTGGCGCTGATGGCTGATTTAGGGGTGA
ATGACACGCGGTATCGAGTGGTGACGCATTTGGGGCATATTTTGAGGGCT
GGGGATACGGTGTTGGGATATTTGCTAGCGACTGCGTCGATGAATAGTTC
GGATGCGGAGGAGCTGGAAGCGAAGACCCGGGCAGGGCTTCCGGACGTGG
TGCTTGTCCGCAAGGTCTATTCGAGCGAAGGGAGGCTGAAGAAACCAGCG
TGGAAGCTTAAGACATTTGAGGCGGATGAGATGGAGGTGATGGAGGCGAG
GGACGCTGAGAAAGAGGATAGGGAGCTTGAAGAATACAGGCAGCAGTTGG
AGGGTGATAGGGAGATGCGGAGAAATGTGAATTTGTACAAGAATGACAGG
ATGTCGATGATGGCCGCAAACAAGACAACACATATGATGGATGGGGAGGA
GATATTGGTTGGAGAGAAAAAGGCGAAGAAGCGCAAAAGCAAGAAAGGAC
TGACACCCGAGACGCCGCCGACGAAAGCTGGTGGGGAGGAGGTCATGGGC
ATGGGCGAGAGAGAAGAGGTGGACGACGACGACGACGACGACGACGAGGA
TGATGATGAAGCTGTGCAGCTGGATGAGTTGCTGGACGACTTGGAGCTTG
ACGACCCAGACGCGCCCCCTGACGACCATGAAGCGCAAGTGCTGGTGGGA
GAGGGAGCTAGCGCCGGGATCCGGGGGGTCAGTAAGGATTTTGCTTTTAC
CTTTCTACCAGGCAAGGGCCACACTGGCGGTGGAGTTGGAGAGAGTGGAT
CGAAAAAGAGGATGGATGAAGGGGAGGAAGGCTTCGGTGATGACTTGTAG
GGATTCTTGATGTTTAGATGGAAGGGGGAAAAATAACAAAGAAATTACGC
CTGAATAATGTTATCTTCAGCTCGCGGAGGTTTTCC

Coding sequence (CDS) from alignment at scaffold_12:521730..523715+

>mRNA_5124 ID=mRNA_5124|Name=jgi.p|Nanoce1779_2|591469|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at scaffold_12:521730..523715+ (Nannochloropsis oceanica)
ATGGCGGACGTCATGCAGCCCGTGGCGGCGACCCAGACACCGGTGGCTGC
CATTTGCTGCATGTGCGCCATCAACATCCAGCCCAACCCCACCAACATGT
GCCTGCAGTGTCTTCGGACCCAAGTCAACATTGCCACGGGTCTGTCCACG
CGGGTGACCATGCACCAATGCCGTGGCTGCCTCAAGTACATGGGCGGCTC
GGGTGGAACGGGCTGGTCGCACTACGAGGCCGAGTCTCGGGAACTGATGG
CCGTGTGCTTGCGCAAGGTGGCGGGCCTGAATCGCTTGCGCCTGATTGAC
GCCGGTTGGATTTGGACGGAGCCCCACTCGAAGCGGCTGAAGCTAAAGCT
GACGGTGCAGAAAGAGGTGATGAACGGCGCCGTCCTCCAAGAGGCGGTCG
TTGTGGAGTTTGTTGTGCGCAATCAGCAGTGCCCGGACTGCTGCGCGTCC
TACACCATCGGGGCTTGGGAGGCCATTGTCCAAGTCCGGCAACGGGTAGA
CCACAAGCGGACGTTCTTGCACCTTGAGCAACTGATTCTGAAGCATAACG
CCCATGCGCAGGCCTTGCAGATCCAGGGCTTCAAGGACGGGATGGATTTT
TATTTTGCGAAGCGGAACCAGGCCGCCCGGTTTACAGAGTTTTTGGAGAC
CGTTTGCCCTGTCAAGGTGAAGCAGTCCAAGAAGCTGGTCTCGCAAGACG
ATCACTCGAACATCTTTAACTACAAGTACACGAGTATAATTGAGATAGTG
CCTGTGTGCAAGGACGACTTGGTGGTGCTTCCCACGAAGCTCGCCCAGAA
CCTGGGGGACATCGCCCGCCTCTCCCTCGTTCAACGTGTCCTCAATCACC
TCCACCTCGTCGATCCCATCACGGGGCAAACGGCCGATCTGACCGCCGAT
AAATTTCACAAGGCTGGGTTTGAATTCCAGGCGTTGCTATCTGCCGGGCG
CTTAGTCCAGTTTATGGTGTTGGGCATCGAGCCCATCATGATTCCGACCA
AGACTTCAGCACCTGTTCGTAGGGCAAATCGTCATCGACTGGCTGAGGTG
GAGGTGGCGCTGATGGCTGATTTAGGGGTGAATGACACGCGGTATCGAGT
GGTGACGCATTTGGGGCATATTTTGAGGGCTGGGGATACGGTGTTGGGAT
ATTTGCTAGCGACTGCGTCGATGAATAGTTCGGATGCGGAGGAGCTGGAA
GCGAAGACCCGGGCAGGGCTTCCGGACGTGGTGCTTGTCCGCAAGGTCTA
TTCGAGCGAAGGGAGGCTGAAGAAACCAGCGTGGAAGCTTAAGACATTTG
AGGCGGATGAGATGGAGGTGATGGAGGCGAGGGACGCTGAGAAAGAGGAT
AGGGAGCTTGAAGAATACAGGCAGCAGTTGGAGGGTGATAGGGAGATGCG
GAGAAATGTGAATTTGTACAAGAATGACAGGATGTCGATGATGGCCGCAA
ACAAGACAACACATATGATGGATGGGGAGGAGATATTGGTTGGAGAGAAA
AAGGCGAAGAAGCGCAAAAGCAAGAAAGGACTGACACCCGAGACGCCGCC
GACGAAAGCTGGTGGGGAGGAGGTCATGGGCATGGGCGAGAGAGAAGAGG
TGGACGACGACGACGACGACGACGACGAGGATGATGATGAAGCTGTGCAG
CTGGATGAGTTGCTGGACGACTTGGAGCTTGACGACCCAGACGCGCCCCC
TGACGACCATGAAGCGCAAGTGCTGGTGGGAGAGGGAGCTAGCGCCGGGA
TCCGGGGGGTCAGTAAGGATTTTGCTTTTACCTTTCTACCAGGCAAGGGC
CACACTGGCGGTGGAGTTGGAGAGAGTGGATCGAAAAAGAGGATGGATGA
AGGGGAGGAAGGCTTCGGTGATGACTTGTAG

Synonyms

Publications