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Properties
| Property Name | Value |
|---|
| TranscriptId | 528967 |
| Track | FilteredModels2 |
| ProteinId | 528881 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:520166..521238 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5123 ID=mRNA_5123|Name=jgi.p|Nanoce1779_2|528881|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
ATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAAGAGGCAGGTTA
TGAAGCTGTCAAAGCAGCCATCAATCTTGGGTACACCCACATCGACACCG
CCTCAGTCTACCGTAACGAAGCTGCCATCGGGCGAGCCATCCGTGAATCA
GGCATTCCGCGCGAGCAGTTCTTTATAACGACCAAACTTGCTCCGAAGGA
TCAAGGGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTCCCTGCATGATT
TGGGCATGGAGTATGTCGACCTCTTCCTCATCCACTGGCCAGCTGCTGCC
GGGCTCAAGCACAATGACCCTCTCAACAAAGTACGACGTCATGAGAGCTA
TGTGGAGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAAAAGCTTGGGAG
TGTCTAACTTTGAAATTCCGCATCTAGAGGCCCTCCTTGCCGATCCCGCC
ATCACCATCCCCCCAAGCGTCAACCAAGTCGAATGTCATCCCTTCTACCC
GCAACGGGAGCTTCACACTTACTGTAGACAGCATAATATCATCCTACAGG
CATACAGTTCCCTGGGACAAGGCAACACAGATCTTTTGGCGCATCCAACC
ATCAAAGCTATTGCGGCCAAGCAAAAAATGACACCCGCACAAGTGTTGTT
GCGGTGGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAAAACCATTAGTC
CTAAACGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCCAGCTAGATGTG
GAGGACATGCAGGCTTTGGATGGCTTGGACGACAAGTGTCACGTCAAGTA
TGCGTGGGACCCGTCTCAAGTTGTTTAG back to topprotein sequence of jgi.p|Nanoce1779_2|528881 >mRNA_5123-protein ID=mRNA_5123-protein|Name=jgi.p|Nanoce1779_2|528881|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MPAVGLGTFQVKEEAGYEAVKAAINLGYTHIDTASVYRNEAAIGRAIRES
GIPREQFFITTKLAPKDQGASKAYAALCQSLHDLGMEYVDLFLIHWPAAA
GLKHNDPLNKVRRHESYVELQQGVLEGKIKSLGVSNFEIPHLEALLADPA
ITIPPSVNQVECHPFYPQRELHTYCRQHNIILQAYSSLGQGNTDLLAHPT
IKAIAAKQKMTPAQVLLRWALQRGIPVLPKTISPKRMVENLVALRLQLDV
EDMQALDGLDDKCHVKYAWDPSQVV* back to topmRNA from alignment at scaffold_12:520166..521238- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5123 ID=mRNA_5123|Name=jgi.p|Nanoce1779_2|528881|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at scaffold_12:520166..521238- (Nannochloropsis oceanica)
ATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAAGAGGCAGGTTA
TGAAGCTGTCAAAGCAGCCATCAATGTAAGAAATCGAAAAGTCGAGGGTT
CGGGTTTATGTTCCTCCCTGCATCGCTCGATCCCTGGGCCCCTGGCAAGT
CACGGTAGTGAGCAAGGCGTTTATGCATCTATTTCGCAGAGGACCTCATG
ATCTCGGCTTCATTCCCGTCAATTTTTATGCTATCTTAAATAATATTTCA
ATGTCCCGCCGCCGCACTTACATCGATCCTTTATCCTCTCTCTCCCTCAC
ACTCCTCACCAAACATACAGCTTGGGTACACCCACATCGACACCGCCTCA
GTCTACCGTAACGAAGCTGCCATCGGGCGAGCCATCCGTGAATCAGGCAT
TCCGCGCGAGCAGTTCTTTATAACGACCAAACTTGCTCCGAAGGATCAAG
GGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTCCCTGCATGATTTGGGC
ATGGAGTATGTCGACCTCTTCCTCATCCACTGGCCAGCTGCTGCCGGGCT
CAAGCACAATGACCCTCTCAACAAAGTACGACGTCATGAGAGCTATGTGG
AGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAAAAGCTTGGGAGTGTCT
AACTTTGAAATTCCGCATCTAGAGGCCCTCCTTGCCGATCCCGCCATCAC
CATCCCCCCAAGCGTCAACCAAGTCGAATGTCATCCCTTCTACCCGCAAC
GGGAGCTTCACACTTACTGTAGACAGCATAATATCATCCTACAGGCATAC
AGTTCCCTGGGACAAGGCAACACAGATCTTTTGGCGCATCCAACCATCAA
AGCTATTGCGGCCAAGCAAAAAATGACACCCGCACAAGTGTTGTTGCGGT
GGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAAAACCATTAGTCCTAAA
CGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCCAGCTAGATGTGGAGGA
CATGCAGGCTTTGGATGGCTTGGACGACAAGTGTCACGTCAAGTATGCGT
GGGACCCGTCTCAAGTTGTTTAG back to topCoding sequence (CDS) from alignment at scaffold_12:520166..521238- >mRNA_5123 ID=mRNA_5123|Name=jgi.p|Nanoce1779_2|528881|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_12:520166..521238- (Nannochloropsis oceanica)
CTTGGGTACACCCACATCGACACCGCCTCAGTCTACCGTAACGAAGCTGC
CATCGGGCGAGCCATCCGTGAATCAGGCATTCCGCGCGAGCAGTTCTTTA
TAACGACCAAACTTGCTCCGAAGGATCAAGGGGCAAGCAAAGCTTATGCT
GCCCTTTGTCAGTCCCTGCATGATTTGGGCATGGAGTATGTCGACCTCTT
CCTCATCCACTGGCCAGCTGCTGCCGGGCTCAAGCACAATGACCCTCTCA
ACAAAGTACGACGTCATGAGAGCTATGTGGAGCTGCAGCAAGGCGTACTG
GAAGGGAAGATCAAAAGCTTGGGAGTGTCTAACTTTGAAATTCCGCATCT
AGAGGCCCTCCTTGCCGATCCCGCCATCACCATCCCCCCAAGCGTCAACC
AAGTCGAATGTCATCCCTTCTACCCGCAACGGGAGCTTCACACTTACTGT
AGACAGCATAATATCATCCTACAGGCATACAGTTCCCTGGGACAAGGCAA
CACAGATCTTTTGGCGCATCCAACCATCAAAGCTATTGCGGCCAAGCAAA
AAATGACACCCGCACAAGTGTTGTTGCGGTGGGCGCTCCAGCGGGGGATT
CCTGTTTTACCCAAAACCATTAGTCCTAAACGAATGGTTGAGAATCTGGT
AGCGTTGCGTCTCCAGCTAGATGTGGAGGACATGCAGGCTTTGGATGGCT
TGGACGACAAGTGTCACGTCAAGTATGCGTGGGACCCGTCTCAAGTTGTT
TAGATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAAGAGGCAGG
TTATGAAGCTGTCAAAGCAGCCATCAATCTTGGGTACACCCACATCGACA
CCGCCTCAGTCTACCGTAACGAAGCTGCCATCGGGCGAGCCATCCGTGAA
TCAGGCATTCCGCGCGAGCAGTTCTTTATAACGACCAAACTTGCTCCGAA
GGATCAAGGGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTCCCTGCATG
ATTTGGGCATGGAGTATGTCGACCTCTTCCTCATCCACTGGCCAGCTGCT
GCCGGGCTCAAGCACAATGACCCTCTCAACAAAGTACGACGTCATGAGAG
CTATGTGGAGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAAAAGCTTGG
GAGTGTCTAACTTTGAAATTCCGCATCTAGAGGCCCTCCTTGCCGATCCC
GCCATCACCATCCCCCCAAGCGTCAACCAAGTCGAATGTCATCCCTTCTA
CCCGCAACGGGAGCTTCACACTTACTGTAGACAGCATAATATCATCCTAC
AGGCATACAGTTCCCTGGGACAAGGCAACACAGATCTTTTGGCGCATCCA
ACCATCAAAGCTATTGCGGCCAAGCAAAAAATGACACCCGCACAAGTGTT
GTTGCGGTGGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAAAACCATTA
GTCCTAAACGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCCAGCTAGAT
GTGGAGGACATGCAGGCTTTGGATGGCTTGGACGACAAGTGTCACGTCAA
GTATGCGTGGGACCCGTCTCAAGTTGTTTAGATGCCCGCTGTCGGCCTGG
GCACATTTCAAGTCAAGGAAGAGGCAGGTTATGAAGCTGTCAAAGCAGCC
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