jgi.p|Nanoce1779_2|591465, mRNA_5122 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591465
Unique NamemRNA_5122
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length279
Alignment locationscaffold_12:519805..520083 +

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Properties
Property NameValue
TranscriptId591551
TrackFilteredModels2
ProteinId591465
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:519805..520083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591465gene_5122Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591465mRNA_5122-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5122CDS_5122Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5122 ID=mRNA_5122|Name=jgi.p|Nanoce1779_2|591465|organism=Nannochloropsis oceanica|type=mRNA|length=279bp
CTACCGCTTTTCCCTACTGGCACAAAGAACTCCATGATGTCGCTGCCTGT
TTATTGAGATGTCGTTGGGGGTGGTTGCATCAGCGTGGCGCGGTGTATGG
TCCGTCGCAAATGGCCTAAGGAGAGGGGAAGGCCGACTCTGTCCGACTCC
AGAGGTAGATTTCGCAATTCAGTCTTGGCGCGTAAAGCTTGCCTGTGAAC
ATGGCTCCCGGCTCACATCTCCCTTTCCTCCCTTTGCCCTTCCCCCCAAC
CACAGCATAAAGCAACACTAGCCAACACA
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protein sequence of jgi.p|Nanoce1779_2|591465

>mRNA_5122-protein ID=mRNA_5122-protein|Name=jgi.p|Nanoce1779_2|591465|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MSLGVVASAWRGVWSVANGLRRGEGRLCPTPEVDFAIQSWRVKLACEHGS
RLTSPFPPFALPPNHSIKQH*
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mRNA from alignment at scaffold_12:519805..520083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5122 ID=mRNA_5122|Name=jgi.p|Nanoce1779_2|591465|organism=Nannochloropsis oceanica|type=mRNA|length=279bp|location=Sequence derived from alignment at scaffold_12:519805..520083+ (Nannochloropsis oceanica)
CTACCGCTTTTCCCTACTGGCACAAAGAACTCCATGATGTCGCTGCCTGT
TTATTGAGATGTCGTTGGGGGTGGTTGCATCAGCGTGGCGCGGTGTATGG
TCCGTCGCAAATGGCCTAAGGAGAGGGGAAGGCCGACTCTGTCCGACTCC
AGAGGTAGATTTCGCAATTCAGTCTTGGCGCGTAAAGCTTGCCTGTGAAC
ATGGCTCCCGGCTCACATCTCCCTTTCCTCCCTTTGCCCTTCCCCCCAAC
CACAGCATAAAGCAACACTAGCCAACACA
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Coding sequence (CDS) from alignment at scaffold_12:519805..520083+

>mRNA_5122 ID=mRNA_5122|Name=jgi.p|Nanoce1779_2|591465|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_12:519805..520083+ (Nannochloropsis oceanica)
ATGTCGTTGGGGGTGGTTGCATCAGCGTGGCGCGGTGTATGGTCCGTCGC
AAATGGCCTAAGGAGAGGGGAAGGCCGACTCTGTCCGACTCCAGAGGTAG
ATTTCGCAATTCAGTCTTGGCGCGTAAAGCTTGCCTGTGAACATGGCTCC
CGGCTCACATCTCCCTTTCCTCCCTTTGCCCTTCCCCCCAACCACAGCAT
AAAGCAACACTAG
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Synonyms
Publications