jgi.p|Nanoce1779_2|591463, mRNA_5121 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591463
Unique Name	mRNA_5121
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2168
Alignment location	scaffold_12:517688..519855 -

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Properties


Property Name	Value
TranscriptId	591549
Track	FilteredModels2
ProteinId	591463

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:517688..519855 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591463	gene_5121	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591463	mRNA_5121-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5121	CDS_5121	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:517688..519855-
coding sequence from alignment at scaffold_12:517688..519855-

mRNA sequence

>mRNA_5121 ID=mRNA_5121|Name=jgi.p|Nanoce1779_2|591463|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp
AACAGGCAGCGACATCATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTA
GCAGCCAAGACGACCATGAACATCATCCGACCAGCAGCAGCCGGCCCACA
CACCAATACCAGGACGACGACAGCCCACCTGCAGCCACACACAGTACAGC
TGACGACAAGTTGGCATGGCTGCAACAGAATTTGGGGATGCATATGCTAG
ATGGTGCCAGTGGCAATCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACG
GCGATGCCCCACACTCTCTTGCCCTTGCTGTACAAATTGACGACACAAGT
GCGAGCATTTCAGGAGCAAAATACGGAGCTCATGTTCGATCTGAAAAAGA
ATCGAGCTGAAGCGGAGCGACTGATGCAAGAAAGGGCCAGTATGTACGAC
AAGGTGGATGCCGCCCATCAGGACCGACAAGCCGCCGAGAGCATGCTGGC
CTCCATGCGGGCCGAGACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGA
AGAATGAGCTCCATGGGCGCTTGGCACGTTCAACTTGGAAAGACTTAACC
ATCCGCGCGCAGCTCAAGAAGAAGGATATGGAGTACGAGAAGCTTCAGAA
GCAATTGACGCGTAGCATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCG
GCACCGCGCGAGGCACGGTGAATCGCGTCCGAAGCATCGACATCACCCCC
AAACCGTTGGTATACAGCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGC
CTCTCGGGCGGCGTTGGCGGCTTGCGACCACCGACAGACCTTGTTGTTGG
AGGAGAATGCTGAGCTTCGGGAGACCCTCAGGTGCATGTATGCAGAGATT
CAGGGACTGCAAGATCAATACGGCGATTTGGTTGAAGAAGTAGAGAGTTG
TCGAATCTGGTACCACGAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGA
CCTCGTTGCTTTCACCACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCC
CCTCAGCCGACGAGCCGCCGATTCGAAGTGGAGGCATTTGAGATGCCTCC
GGAGTGGTTGAGGCGTGTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTG
AAATGGGTCGGCGATACGATAGACTGCGGGAGGTGATCATAAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAACAGCATGAGGTGGAGGAGGAGGG
AGAGGGAATTGCGTCGGCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGT
TGCAGCGGGAGGTGAGACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAG
GTGGTGGCGATGCAGGAAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGA
CACAGGCCACGAAGGCGGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGG
AGGGAGGGCGTCAACGCTTGTCCTCTGATTCGTGGATGGCGGACAACGGG
CATGTGGATTCCCGGACTGTGCAACCAGAGGAGAACGAGCAACAGCAGCC
GCGGCTAGAGGAAGAGGAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGC
TAAAAGCAGATTTGATAGCATTTGGGATGGAGGACAAGCAACAAGACTCT
GTTGGTGGTACTACTGCTACTTTCGCTGCTTTGGAAGTTACGCCAATCAA
GAAGATGGACGCCCACGGAGATGGGCAATGGAAGGTGACACGAGCTCCAT
TGCGGTCTCTGTCGGGAGGTGGAGGCAACCTGTTATCGCCCATGCTGCAG
GCGCGAATTGCGGGCTTGGACCATGACATGTACAAGCCCAATAGGAACAA
AGAAGAGGGTCTGGATGGTGGCACGCCGCGGGGACGGTCATCTTTGCAGG
CGGCCTTGGGGTTGCTCAGTCCGATAGAGCATCATGACCCTTTTGGGAAT
TGTCGCCACCCGGCTAAAAAGACTCTTTAATTGCATGCATTTTTTCGGCG
AAGGTAGATGGTGGTAAGATATGCAGTAGTATAGCACAAGCCCCACCTCC
CGAAAGACGGCAATTTCCTGAGGCGGCGATTGCAAACGGTCAAAGCGAAG
CAGACTGGCAACGATGAAGATAGTGAAAGAGATGAGTTTCTGTGCAGAGT
ACGAGAGAGGAGTGATAAGGAAAGATTCGACGAAAATACGACTGGGAAAT
AATGACTGTAAGAGTGCG

protein sequence of jgi.p|Nanoce1779_2|591463

>mRNA_5121-protein ID=mRNA_5121-protein|Name=jgi.p|Nanoce1779_2|591463|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MEFFVPVGKSGSSQDDHEHHPTSSSRPTHQYQDDDSPPAATHSTADDKLA
WLQQNLGMHMLDGASGNLTGAELEAALTAMPHTLLPLLYKLTTQVRAFQE
QNTELMFDLKKNRAEAERLMQERASMYDKVDAAHQDRQAAESMLASMRAE
TAALEKRWSEEKNELHGRLARSTWKDLTIRAQLKKKDMEYEKLQKQLTRS
IGSSSGSKSTTGTARGTVNRVRSIDITPKPLVYSGGSSDLVGDEASRAAL
AACDHRQTLLLEENAELRETLRCMYAEIQGLQDQYGDLVEEVESCRIWYH
EELAKAKGAAGTSLLSPPLKGEEESIFSPQPTSRRFEVEAFEMPPEWLRR
VVGEELRANMAEMGRRYDRLREVIIKQQQQQQQQQQQQHEVEEEGEGIAS
ALRDLTAEKKALQREVRRVQARLYETEEVVAMQEVVIKGALFGEDTGHEG
GSQGGRRPHAGEGGRQRLSSDSWMADNGHVDSRTVQPEENEQQQPRLEEE
ERGTLEEIAEKLKADLIAFGMEDKQQDSVGGTTATFAALEVTPIKKMDAH
GDGQWKVTRAPLRSLSGGGGNLLSPMLQARIAGLDHDMYKPNRNKEEGLD
GGTPRGRSSLQAALGLLSPIEHHDPFGNCRHPAKKTL*

mRNA from alignment at scaffold_12:517688..519855-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5121 ID=mRNA_5121|Name=jgi.p|Nanoce1779_2|591463|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_12:517688..519855- (Nannochloropsis oceanica)
AACAGGCAGCGACATCATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTA
GCAGCCAAGACGACCATGAACATCATCCGACCAGCAGCAGCCGGCCCACA
CACCAATACCAGGACGACGACAGCCCACCTGCAGCCACACACAGTACAGC
TGACGACAAGTTGGCATGGCTGCAACAGAATTTGGGGATGCATATGCTAG
ATGGTGCCAGTGGCAATCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACG
GCGATGCCCCACACTCTCTTGCCCTTGCTGTACAAATTGACGACACAAGT
GCGAGCATTTCAGGAGCAAAATACGGAGCTCATGTTCGATCTGAAAAAGA
ATCGAGCTGAAGCGGAGCGACTGATGCAAGAAAGGGCCAGTATGTACGAC
AAGGTGGATGCCGCCCATCAGGACCGACAAGCCGCCGAGAGCATGCTGGC
CTCCATGCGGGCCGAGACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGA
AGAATGAGCTCCATGGGCGCTTGGCACGTTCAACTTGGAAAGACTTAACC
ATCCGCGCGCAGCTCAAGAAGAAGGATATGGAGTACGAGAAGCTTCAGAA
GCAATTGACGCGTAGCATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCG
GCACCGCGCGAGGCACGGTGAATCGCGTCCGAAGCATCGACATCACCCCC
AAACCGTTGGTATACAGCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGC
CTCTCGGGCGGCGTTGGCGGCTTGCGACCACCGACAGACCTTGTTGTTGG
AGGAGAATGCTGAGCTTCGGGAGACCCTCAGGTGCATGTATGCAGAGATT
CAGGGACTGCAAGATCAATACGGCGATTTGGTTGAAGAAGTAGAGAGTTG
TCGAATCTGGTACCACGAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGA
CCTCGTTGCTTTCACCACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCC
CCTCAGCCGACGAGCCGCCGATTCGAAGTGGAGGCATTTGAGATGCCTCC
GGAGTGGTTGAGGCGTGTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTG
AAATGGGTCGGCGATACGATAGACTGCGGGAGGTGATCATAAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAACAGCATGAGGTGGAGGAGGAGGG
AGAGGGAATTGCGTCGGCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGT
TGCAGCGGGAGGTGAGACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAG
GTGGTGGCGATGCAGGAAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGA
CACAGGCCACGAAGGCGGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGG
AGGGAGGGCGTCAACGCTTGTCCTCTGATTCGTGGATGGCGGACAACGGG
CATGTGGATTCCCGGACTGTGCAACCAGAGGAGAACGAGCAACAGCAGCC
GCGGCTAGAGGAAGAGGAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGC
TAAAAGCAGATTTGATAGCATTTGGGATGGAGGACAAGCAACAAGACTCT
GTTGGTGGTACTACTGCTACTTTCGCTGCTTTGGAAGTTACGCCAATCAA
GAAGATGGACGCCCACGGAGATGGGCAATGGAAGGTGACACGAGCTCCAT
TGCGGTCTCTGTCGGGAGGTGGAGGCAACCTGTTATCGCCCATGCTGCAG
GCGCGAATTGCGGGCTTGGACCATGACATGTACAAGCCCAATAGGAACAA
AGAAGAGGGTCTGGATGGTGGCACGCCGCGGGGACGGTCATCTTTGCAGG
CGGCCTTGGGGTTGCTCAGTCCGATAGAGCATCATGACCCTTTTGGGAAT
TGTCGCCACCCGGCTAAAAAGACTCTTTAATTGCATGCATTTTTTCGGCG
AAGGTAGATGGTGGTAAGATATGCAGTAGTATAGCACAAGCCCCACCTCC
CGAAAGACGGCAATTTCCTGAGGCGGCGATTGCAAACGGTCAAAGCGAAG
CAGACTGGCAACGATGAAGATAGTGAAAGAGATGAGTTTCTGTGCAGAGT
ACGAGAGAGGAGTGATAAGGAAAGATTCGACGAAAATACGACTGGGAAAT
AATGACTGTAAGAGTGCG

Coding sequence (CDS) from alignment at scaffold_12:517688..519855-

>mRNA_5121 ID=mRNA_5121|Name=jgi.p|Nanoce1779_2|591463|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_12:517688..519855- (Nannochloropsis oceanica)
ATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTAGCAGCCAAGACGACCA
TGAACATCATCCGACCAGCAGCAGCCGGCCCACACACCAATACCAGGACG
ACGACAGCCCACCTGCAGCCACACACAGTACAGCTGACGACAAGTTGGCA
TGGCTGCAACAGAATTTGGGGATGCATATGCTAGATGGTGCCAGTGGCAA
TCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACGGCGATGCCCCACACTC
TCTTGCCCTTGCTGTACAAATTGACGACACAAGTGCGAGCATTTCAGGAG
CAAAATACGGAGCTCATGTTCGATCTGAAAAAGAATCGAGCTGAAGCGGA
GCGACTGATGCAAGAAAGGGCCAGTATGTACGACAAGGTGGATGCCGCCC
ATCAGGACCGACAAGCCGCCGAGAGCATGCTGGCCTCCATGCGGGCCGAG
ACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGAAGAATGAGCTCCATGG
GCGCTTGGCACGTTCAACTTGGAAAGACTTAACCATCCGCGCGCAGCTCA
AGAAGAAGGATATGGAGTACGAGAAGCTTCAGAAGCAATTGACGCGTAGC
ATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCGGCACCGCGCGAGGCAC
GGTGAATCGCGTCCGAAGCATCGACATCACCCCCAAACCGTTGGTATACA
GCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGCCTCTCGGGCGGCGTTG
GCGGCTTGCGACCACCGACAGACCTTGTTGTTGGAGGAGAATGCTGAGCT
TCGGGAGACCCTCAGGTGCATGTATGCAGAGATTCAGGGACTGCAAGATC
AATACGGCGATTTGGTTGAAGAAGTAGAGAGTTGTCGAATCTGGTACCAC
GAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGACCTCGTTGCTTTCACC
ACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCCCCTCAGCCGACGAGCC
GCCGATTCGAAGTGGAGGCATTTGAGATGCCTCCGGAGTGGTTGAGGCGT
GTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTGAAATGGGTCGGCGATA
CGATAGACTGCGGGAGGTGATCATAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAGCATGAGGTGGAGGAGGAGGGAGAGGGAATTGCGTCG
GCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGTTGCAGCGGGAGGTGAG
ACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAGGTGGTGGCGATGCAGG
AAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGACACAGGCCACGAAGGC
GGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGGAGGGAGGGCGTCAACG
CTTGTCCTCTGATTCGTGGATGGCGGACAACGGGCATGTGGATTCCCGGA
CTGTGCAACCAGAGGAGAACGAGCAACAGCAGCCGCGGCTAGAGGAAGAG
GAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGCTAAAAGCAGATTTGAT
AGCATTTGGGATGGAGGACAAGCAACAAGACTCTGTTGGTGGTACTACTG
CTACTTTCGCTGCTTTGGAAGTTACGCCAATCAAGAAGATGGACGCCCAC
GGAGATGGGCAATGGAAGGTGACACGAGCTCCATTGCGGTCTCTGTCGGG
AGGTGGAGGCAACCTGTTATCGCCCATGCTGCAGGCGCGAATTGCGGGCT
TGGACCATGACATGTACAAGCCCAATAGGAACAAAGAAGAGGGTCTGGAT
GGTGGCACGCCGCGGGGACGGTCATCTTTGCAGGCGGCCTTGGGGTTGCT
CAGTCCGATAGAGCATCATGACCCTTTTGGGAATTGTCGCCACCCGGCTA
AAAAGACTCTTTAA

Synonyms

Publications