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Properties
Property Name | Value |
TranscriptId | 542707 |
Track | FilteredModels2 |
ProteinId | 542621 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:514740..517674 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5120 ID=mRNA_5120|Name=jgi.p|Nanoce1779_2|542621|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp GAACTTGGCCACCATTTTCCTGTGCAAGAAGTAAGAACGGGAGGAGTTGC ACTAGGATGAGAGGGGGAAGGCCGGCAATGATCGTGCGGGGTCATGTATC GGCGGCCTGCGGGCCTTTCACTAAAGATGTAGATGGACCTGGCGTTATTG TATCAGCAGTTATGAAGAGGATTTTCAAACACCGTAAAGAGTAGCAGAAT GCTTGTGCTTGGTAGAGGGCGCGGCAGGCGAGCTGCCGTGACCGTAGAGG CGAGCACACCAACCTCAAATCAGTTCCAGAAACTTGTGCATTTTTCTATA CCATACTTACCTCCAAAACCCGCAACTGTGACCACCCATTTATCCTCCAT CATCTCTTGGTTGTATCTGGGTGGTCTGGGTTTGCTCGAAGGCTGTGTAT TTGAGTTGGCATGCTTTTGCTTAACTAGAGACGTAAGATACTCCCTCTCT GTGTTGATGGACGAATGGCCTGCCTTGCGCACTGCAACTTGGCCTGATCC ACCATACATACATGCCGGCTACACAGACGACTGCCCTGAGGAGAAGCCAA TGTATGTTTACAGTCGACTGCTGGCTTTTGCGGCGATGGGAGTGCACGGT GCCATGTGCTATAGCCTCCCCACCAAAAGCTTGCCCCTAGCCGCTTATCG TGCGACTGACCATCCCTTTCCATCCTTTCCACCCCGCGACCACCCACGAC AGACTTCAGGAACATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACCC TGGCCGTGGGCACGACTGCTTTTCTGCCGCCTGCGGCCCTTCCCGAGCTG GCCAGCGTACGCGGTGCTGTGTCTAGACGGGGCGCGGCATCCACGACCAT GATGGCCAAGAATGTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGGTGG AGGGGATCAACATTGTGGCTAATGCTGTCAAGGTAACCCTGGGACCGAAG GGCCGCAACGTGGTGTTGGAACGCAAGTACGGTGTGCCTGAGATTGTGAA CGATGGTGTGACGATTGCCCGTGATATTGAGCTGGCAGACCCTGAGCAGA ATGTAGGGGTGAAGCTCGTGCAGGAGGTCGCTACCAAGTCCGACATGAAA GCCGGCGATGGTACCACAACCTCCACCGTAATGACCCAAGCCATCGTCAA CCAAGGTATGCGCCAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGCGCA GGGGTATCATGCACTGCTCTAAGGTTCTGTGTGACACGATCAAACAGATG GCGAAGCCCGTGGAGAGCAATAAGGACCTTTTCGATATCGCCACTGTTGC CACGGGCGGCAACGCGGAGATGGGGGCAGTGATTGCCAAGGCTTATGAGT TGGTGGGCGACAGCGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTGCAA GACGAGGTGGAGTTCACGGAAGGGTTGAGCATCGATCGTGGATACGTCTC TCCTTACTTCGTCAAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTAAGC CCCGCGTGCTTGTCACCGAGGGGAAGATTTCGGCGGTCCATGAGATTTTG CCTTTGCTCGAACACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGTCGC TGAGGACGTTGCCGGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAATGC GTGGAGTGCTTGACGTGGTGGCTATCAAAGCACCTGGCTTCGGAGACCGA CGCAAACAGCTGTTGCAGGATATTGCCGTTGCCACGGGTGCCACCTTCGT TGCGGAGGAGGTGGGCGTGACACTTGAAAGTGTGACGCCGGAGATGCTGG GTGTGGCGGAGAAGGTGGTAGTTGGGAAGGACACCACGACCATTGTCACC AGCAGTGGATATGCTGATGCTATCAAGGAGAGGATTCTGGCGATTAAGCG CGAGATGGACTTGATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGCAAC GTGTGGCGGCTTTAGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCGGCA ACTGAGACGGAGCTGAAGGATAAGAAGCTCAGGTATGAGGACGCATTAAA CTCGGTGAAGAGTGCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGTCGA CTCTGCTGTATATGCTTAAGAAGAGGGATGAAATGTTGGCTGCCATGGAC GATGATGACGAGAAGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTCGGC GCCCGTGATGCAGATTGCGCAAAATGCTGGCATCGATGGTGGGATTGTGG TGGAGCGTATTTTCGAGAACCAAGAGTGGGGATGGGGCTACAACGCCGCT ACCGGCGTTTATGAGAACTTGTTGAGCACGGGCGTGGTGGACTCGGCGAA GGTCGTGATTAATGCGTTGGAAAACTCGGCGTCGATTGCTTCGATGGTGC TGACGACCGAGTGTTTGATTACTGAGATCCCGGAAAGGAAATCGTTAGAC CAGGCGGCCCAGGATTTTGATGGCGGAGGACAGTACATGTAAGGAAGTGT CGAGGCCGAGAGGAAGGGGGGAAATAAGGGAGAGAAAGGAAAGGCTGGCT GGCTAGAGAGGATTATTTGAGATGATGGAGAGAGTGGGTACGAGGGAAGA GAGGAAGGGAGGGAGGGGTCATGTGCGTGGGTTGAGCGATCTGCTGTGCG GCGTCACAGACTGGTGGCAGGCATTGCGGTTGTGTGGCTGGTGCACAATA GGGCTCGATAGGATTAATAGCAAGGCAGGGAGGGTTAAGCTACCAACATA AAACGAGGGGGAAAGATGACATACCACACTGGAACCCCACCCTGCTCTCT GCAGCACAAAGAAACAAGCCAAAAGACAGCGG back to topprotein sequence of jgi.p|Nanoce1779_2|542621 >mRNA_5120-protein ID=mRNA_5120-protein|Name=jgi.p|Nanoce1779_2|542621|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MKWGVLGAIIATLAVGTTAFLPPAALPELASVRGAVSRRGAASTTMMAKN VRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVT IARDIELADPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMR QVTAGANPVALRRGIMHCSKVLCDTIKQMAKPVESNKDLFDIATVATGGN AEMGAVIAKAYELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFV KDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVA GEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEV GVTLESVTPEMLGVAEKVVVGKDTTTIVTSSGYADAIKERILAIKREMDL MDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKS AIEMGVVPGGGSTLLYMLKKRDEMLAAMDDDDEKAGADIVFRSLSAPVMQ IAQNAGIDGGIVVERIFENQEWGWGYNAATGVYENLLSTGVVDSAKVVIN ALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM* back to topmRNA from alignment at scaffold_12:514740..517674+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5120 ID=mRNA_5120|Name=jgi.p|Nanoce1779_2|542621|organism=Nannochloropsis oceanica|type=mRNA|length=2935bp|location=Sequence derived from alignment at scaffold_12:514740..517674+ (Nannochloropsis oceanica) GAACTTGGCCACCATTTTCCTGTGCAAGAAGTAAGAACGGGAGGAGTTGC
ACTAGGATGAGAGGGGGAAGGCCGGCAATGATCGTGCGGGGTCATGTATC
GGCGGCCTGCGGGCCTTTCACTAAAGATGTAGATGGACCTGGCGTTATTG
TATCAGCAGTTATGAAGAGGATTTTCAAACACCGTAAAGAGTAGCAGAAT
GCTTGTGCTTGGTAGAGGGCGCGGCAGGCGAGCTGCCGTGACCGTAGAGG
CGAGCACACCAACCTCAAATCAGTTCCAGAAACTTGTGCATTTTTCTATA
CCATACTTACCTCCAAAACCCGCAACTGTGACCACCCATTTATCCTCCAT
CATCTCTTGGTTGTATCTGGGTGGTCTGGGTTTGCTCGAAGGCTGTGTAT
TTGAGTTGGCATGCTTTTGCTTAACTAGAGACGTAAGATACTCCCTCTCT
GTGTTGATGGACGAATGGCCTGCCTTGCGCACTGCAACTTGGCCTGATCC
ACCATACATACATGCCGGCTACACAGACGACTGCCCTGAGGAGAAGCCAA
TGTATGTTTACAGTCGACTGCTGGCTTTTGCGGCGATGGGAGTGCACGGT
GCCATGTGCTATAGCCTCCCCACCAAAAGCTTGCCCCTAGCCGCTTATCG
TGCGACTGACCATCCCTTTCCATCCTTTCCACCCCGCGACCACCCACGAC
AGACTTCAGGAACATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACCC
TGGCCGTGGGCACGACTGCTTTTCTGCCGCCTGGTAAGATATCGAATTGT
TTCTCCTCTTCCTCACTCTCAACCTAGGTTTTCCAGAAAAAATTAACGCC
CCATACCCCGTCAACCATCCCCCCCCCCCCTTACAGCGGCCCTTCCCGAG
CTGGCCAGCGTACGCGGTGCTGTGTCTAGACGGGGCGCGGCATCCACGAC
CATGATGGCCAAGAATGTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGG
TGGAGGGGATCAACATTGTGGCTAATGCTGTCAAGGTAACCCTGGGACCG
AAGGGCCGCAACGTGGTGTTGGAACGCAAGTACGGTGTGCCTGAGATTGT
GAACGATGGTGTGACGATTGCCCGTGATATTGAGCTGGCAGACCCTGAGC
AGAATGTAGGGGTGAAGCTCGTGCAGGAGGTCGCTACCAAGTCCGACATG
AAAGCCGGCGATGGTACCACAACCTCCACCGTAATGACCCAAGCCATCGT
CAACCAAGGTATGCGCCAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGC
GCAGGGGTATCATGCACTGCTCTAAGGTTCTGTGTGACACGATCAAACAG
ATGGCGAAGCCCGTGGAGAGCAATAAGGACCTTTTCGATATCGCCACTGT
TGCCACGGGCGGCAACGCGGAGATGGGGGCAGTGATTGCCAAGGCTTATG
AGTTGGTGGGCGACAGCGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTG
CAAGACGAGGTGGAGTTCACGGAAGGGTTGAGCATCGATCGTGGATACGT
CTCTCCTTACTTCGTCAAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTA
AGCCCCGCGTGCTTGTCACCGAGGGGAAGATTTCGGCGGTCCATGAGATT
TTGCCTTTGCTCGAACACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGT
CGCTGAGGACGTTGCCGGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAA
TGCGTGGAGTGCTTGACGTGGTGGCTATCAAAGCACCTGGCTTCGGAGAC
CGACGCAAACAGCTGTTGCAGGATATTGCCGTTGCCACGGGTGCCACCTT
CGTTGCGGAGGAGGTGGGCGTGACACTTGAAAGTGTGACGCCGGAGATGC
TGGGTGTGGCGGAGAAGGTGGTAGTTGGGAAGGACACCACGACCATTGTC
ACCAGCAGTGGATATGCTGATGCTATCAAGGAGAGGATTCTGGCGATTAA
GCGCGAGATGGACTTGATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGC
AACGTGTGGCGGCTTTAGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCG
GCAACTGAGACGGAGCTGAAGGATAAGAAGCTCAGGTATGAGGACGCATT
AAACTCGGTGAAGAGTGCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGT
CGACTCTGCTGTATATGCTTAAGAAGAGGGATGAAATGTTGGCTGCCATG
GACGATGATGACGAGAAGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTC
GGCGCCCGTGATGCAGATTGCGCAAAATGCTGGCATCGATGGTGGGATTG
TGGTGGAGCGTATTTTCGAGAACCAAGAGTGGGGATGGGGCTACAACGCC
GCTACCGGCGTTTATGAGAACTTGTTGAGCACGGGCGTGGTGGACTCGGC
GAAGGTCGTGATTAATGCGTTGGAAAACTCGGCGTCGATTGCTTCGATGG
TGCTGACGACCGAGTGTTTGATTACTGAGATCCCGGAAAGGAAATCGTTA
GACCAGGCGGCCCAGGATTTTGATGGCGGAGGACAGTACATGTAAGGAAG
TGTCGAGGCCGAGAGGAAGGGGGGAAATAAGGGAGAGAAAGGAAAGGCTG
GCTGGCTAGAGAGGATTATTTGAGATGATGGAGAGAGTGGGTACGAGGGA
AGAGAGGAAGGGAGGGAGGGGTCATGTGCGTGGGTTGAGCGATCTGCTGT
GCGGCGTCACAGACTGGTGGCAGGCATTGCGGTTGTGTGGCTGGTGCACA
ATAGGGCTCGATAGGATTAATAGCAAGGCAGGGAGGGTTAAGCTACCAAC
ATAAAACGAGGGGGAAAGATGACATACCACACTGGAACCCCACCCTGCTC
TCTGCAGCACAAAGAAACAAGCCAAAAGACAGCGG back to topCoding sequence (CDS) from alignment at scaffold_12:514740..517674+ >mRNA_5120 ID=mRNA_5120|Name=jgi.p|Nanoce1779_2|542621|organism=Nannochloropsis oceanica|type=CDS|length=3558bp|location=Sequence derived from alignment at scaffold_12:514740..517674+ (Nannochloropsis oceanica) ATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACCCTGGCCGTGGGCAC GACTGCTTTTCTGCCGCCTGCGGCCCTTCCCGAGCTGGCCAGCGTACGCG GTGCTGTGTCTAGACGGGGCGCGGCATCCACGACCATGATGGCCAAGAAT GTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGGTGGAGGGGATCAACAT TGTGGCTAATGCTGTCAAGGTAACCCTGGGACCGAAGGGCCGCAACGTGG TGTTGGAACGCAAGTACGGTGTGCCTGAGATTGTGAACGATGGTGTGACG ATTGCCCGTGATATTGAGCTGGCAGACCCTGAGCAGAATGTAGGGGTGAA GCTCGTGCAGGAGGTCGCTACCAAGTCCGACATGAAAGCCGGCGATGGTA CCACAACCTCCACCGTAATGACCCAAGCCATCGTCAACCAAGGTATGCGC CAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGCGCAGGGGTATCATGCA CTGCTCTAAGGTTCTGTGTGACACGATCAAACAGATGGCGAAGCCCGTGG AGAGCAATAAGGACCTTTTCGATATCGCCACTGTTGCCACGGGCGGCAAC GCGGAGATGGGGGCAGTGATTGCCAAGGCTTATGAGTTGGTGGGCGACAG CGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTGCAAGACGAGGTGGAGT TCACGGAAGGGTTGAGCATCGATCGTGGATACGTCTCTCCTTACTTCGTC AAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTAAGCCCCGCGTGCTTGT CACCGAGGGGAAGATTTCGGCGGTCCATGAGATTTTGCCTTTGCTCGAAC ACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGTCGCTGAGGACGTTGCC GGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAATGCGTGGAGTGCTTGA CGTGGTGGCTATCAAAGCACCTGGCTTCGGAGACCGACGCAAACAGCTGT TGCAGGATATTGCCGTTGCCACGGGTGCCACCTTCGTTGCGGAGGAGGTG GGCGTGACACTTGAAAGTGTGACGCCGGAGATGCTGGGTGTGGCGGAGAA GGTGGTAGTTGGGAAGGACACCACGACCATTGTCACCAGCAGTGGATATG CTGATGCTATCAAGGAGAGGATTCTGGCGATTAAGCGCGAGATGGACTTG ATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGCAACGTGTGGCGGCTTT AGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCGGCAACTGAGACGGAGC TGAAGGATAAGAAGCTCAGGTATGAGGACGCATTAAACTCGGTGAAGAGT GCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGTCGACTCTGCTGTATAT GCTTAAGAAGAGGGATGAAATGTTGGCTGCCATGGACGATGATGACGAGA AGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTCGGCGCCCGTGATGCAG ATTGCGCAAAATGCTGGCATCGATGGTGGGATTGTGGTGGAGCGTATTTT CGAGAACCAAGAGTGGGGATGGGGCTACAACGCCGCTACCGGCGTTTATG AGAACTTGTTGAGCACGGGCGTGGTGGACTCGGCGAAGGTCGTGATTAAT GCGTTGGAAAACTCGGCGTCGATTGCTTCGATGGTGCTGACGACCGAGTG TTTGATTACTGAGATCCCGGAAAGGAAATCGTTAGACCAGGCGGCCCAGG ATTTTGATGGCGGAGGACAGTACATGTAAATGAAGTGGGGCGTCCTTGGA GCAATCATAGCCACCCTGGCCGTGGGCACGACTGCTTTTCTGCCGCCTGC GGCCCTTCCCGAGCTGGCCAGCGTACGCGGTGCTGTGTCTAGACGGGGCG CGGCATCCACGACCATGATGGCCAAGAATGTGCGCCTGAGCGAGAAGAGC CGCCAGAAGCTGGTGGAGGGGATCAACATTGTGGCTAATGCTGTCAAGGT AACCCTGGGACCGAAGGGCCGCAACGTGGTGTTGGAACGCAAGTACGGTG TGCCTGAGATTGTGAACGATGGTGTGACGATTGCCCGTGATATTGAGCTG GCAGACCCTGAGCAGAATGTAGGGGTGAAGCTCGTGCAGGAGGTCGCTAC CAAGTCCGACATGAAAGCCGGCGATGGTACCACAACCTCCACCGTAATGA CCCAAGCCATCGTCAACCAAGGTATGCGCCAGGTGACGGCAGGTGCAAAC CCCGTGGCTCTGCGCAGGGGTATCATGCACTGCTCTAAGGTTCTGTGTGA CACGATCAAACAGATGGCGAAGCCCGTGGAGAGCAATAAGGACCTTTTCG ATATCGCCACTGTTGCCACGGGCGGCAACGCGGAGATGGGGGCAGTGATT GCCAAGGCTTATGAGTTGGTGGGCGACAGCGGCTCGACAGTCGTGGAGGA GTCTCAGACTGTGCAAGACGAGGTGGAGTTCACGGAAGGGTTGAGCATCG ATCGTGGATACGTCTCTCCTTACTTCGTCAAGGACCAAGAGCGACAGCTG GTAGAGCTGCGTAAGCCCCGCGTGCTTGTCACCGAGGGGAAGATTTCGGC GGTCCATGAGATTTTGCCTTTGCTCGAACACATCGCCAAGAGCAAGGAGC CGCTGTTCATTGTCGCTGAGGACGTTGCCGGGGAGGCTTTGAGCGCGCTG GTGGTGAACAAAATGCGTGGAGTGCTTGACGTGGTGGCTATCAAAGCACC TGGCTTCGGAGACCGACGCAAACAGCTGTTGCAGGATATTGCCGTTGCCA CGGGTGCCACCTTCGTTGCGGAGGAGGTGGGCGTGACACTTGAAAGTGTG ACGCCGGAGATGCTGGGTGTGGCGGAGAAGGTGGTAGTTGGGAAGGACAC CACGACCATTGTCACCAGCAGTGGATATGCTGATGCTATCAAGGAGAGGA TTCTGGCGATTAAGCGCGAGATGGACTTGATGGACTCGAAGTTCGATAAG GAGAAGGCGCAGCAACGTGTGGCGGCTTTAGGGGGGGGGATCGCTCGAAT TAAGGTGGGGGCGGCAACTGAGACGGAGCTGAAGGATAAGAAGCTCAGGT ATGAGGACGCATTAAACTCGGTGAAGAGTGCGATTGAGATGGGTGTTGTG CCGGGGGGAGGGTCGACTCTGCTGTATATGCTTAAGAAGAGGGATGAAAT GTTGGCTGCCATGGACGATGATGACGAGAAGGCGGGTGCCGACATTGTGT TCCGCTCTTTGTCGGCGCCCGTGATGCAGATTGCGCAAAATGCTGGCATC GATGGTGGGATTGTGGTGGAGCGTATTTTCGAGAACCAAGAGTGGGGATG GGGCTACAACGCCGCTACCGGCGTTTATGAGAACTTGTTGAGCACGGGCG TGGTGGACTCGGCGAAGGTCGTGATTAATGCGTTGGAAAACTCGGCGTCG ATTGCTTCGATGGTGCTGACGACCGAGTGTTTGATTACTGAGATCCCGGA AAGGAAATCGTTAGACCAGGCGGCCCAGGATTTTGATGGCGGAGGACAGT ACATGTAA back to top
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