jgi.p|Nanoce1779_2|668524, mRNA_512 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668524
Unique Name	mRNA_512
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2241
Alignment location	scaffold_3:1238976..1241216 -

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Properties


Property Name	Value
TranscriptId	668610
Track	FilteredModels2
ProteinId	668524

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1238976..1241216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668524	gene_512	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668524	mRNA_512-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_512	CDS_512	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1238976..1241216-
coding sequence from alignment at scaffold_3:1238976..1241216-

mRNA sequence

>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
CAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACTTCTA
TTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGCTGGC
AGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCGGTGT
GCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAGCAGC
AGAGACAAGATCAGCGGCAGCAATGGCAGCATCGGCAATACTGCGAGGAC
GTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGGTCAC
GGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTGGAAC
AATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACATGACT
TATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGGAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAA
AGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAGTTTG
CAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGCAACA
AAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACCTCTG
CCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACAACGA
CAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATAACGA
TGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGACGGCC
GTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGCTCGT
TTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGGTGGA
TGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGTCGTC
TGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCAGCCG
TGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAGCGAC
GGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGAGAGG
AGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTTGCAT
GATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCGCGTC
TTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATGAAAG
GAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTCCTCC
TCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTC
CTCTTCCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACT
CGTCCTCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTC
CTCGATACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCT
CCTCAAAGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACA
CTACTCTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATA
GCAGCGGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGA
CGGGGAGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGC
CTCCGAGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAA
GGATCAGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATT
TCAGAGGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATA
GACAGTGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCA
CAAAGCCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAG
GGATGCCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGA
AATATACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCG
TTCGTTTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGT
GTGTATGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTAT
GCTGCTTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATT
AACAACACACATCCGACCTACCACAATCCCCCACCCTCCCC

protein sequence of jgi.p|Nanoce1779_2|668524

>mRNA_512-protein ID=mRNA_512-protein|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MSAPTTSIPIVMPHFTSSGSSSAGSRRTLFLVMLMLVVLGVLLSTALFVL
RTKQQQQQRQDQRQQWQHRQYCEDVKPPLSSVPVFFTAGVTAETQRAAYS
TLKGTLEQYRSELGLRINALHNMTYVRLPGWQEEEDDGEEEEEEEEEEEE
EEEEEEEKHAGLRSKARANLTASLQARMWKEFEKIPACWQQNEDLLTLLL
RFPKPTSALLPAAQGTPKQRPKQRQKEQSTSVTPTSSSYNDAIQIFTHLY
RDWTDDGRELRRKTYMPILRAAARLFQPSSPSMARNDGMVDAIEIKYILV
PGAGLGRLAFELAFGQRPSQQLQPCFHVTAMDISPVMIAATAAVLDVVFA
SKTEEGEEGRGGKEGANFFYPFLHDPLLNQRSHARRFHAASFPDTAAVNQ
LQSHRMKGKQRHHATSFFSSSSSSSSTSSSSSSSSSASLPSSSLALELGN
FLHLPLHSSSSWSQSQHAIITCYFLDTAPNPLSYLRTIHSLLKEGGYWIN
LGPLNYHTTLPNGAVQLTVEEIEIAAEGMGFRKIKEGEDEDGEEEEGQLE
WCAYRPEPPRVGGKEGEGEGGREEGSAFLRVDVYKPVMSIFQRIKTR*

mRNA from alignment at scaffold_3:1238976..1241216-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at scaffold_3:1238976..1241216- (Nannochloropsis oceanica)
CAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACTTCTA
TTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGCTGGC
AGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCGGTGT
GCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAGCAGC
AGAGACAAGATCAGCGGCAGCAATGGCAGCATCGGCAATACTGCGAGGAC
GTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGGTCAC
GGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTGGAAC
AATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACATGACT
TATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGGAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAA
AGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAGTTTG
CAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGCAACA
AAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACCTCTG
CCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACAACGA
CAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATAACGA
TGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGACGGCC
GTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGCTCGT
TTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGGTGGA
TGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGTCGTC
TGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCAGCCG
TGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAGCGAC
GGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGAGAGG
AGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTTGCAT
GATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCGCGTC
TTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATGAAAG
GAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTCCTCC
TCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTC
CTCTTCCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACT
CGTCCTCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTC
CTCGATACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCT
CCTCAAAGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACA
CTACTCTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATA
GCAGCGGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGA
CGGGGAGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGC
CTCCGAGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAA
GGATCAGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATT
TCAGAGGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATA
GACAGTGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCA
CAAAGCCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAG
GGATGCCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGA
AATATACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCG
TTCGTTTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGT
GTGTATGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTAT
GCTGCTTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATT
AACAACACACATCCGACCTACCACAATCCCCCACCCTCCCC

Coding sequence (CDS) from alignment at scaffold_3:1238976..1241216-

>mRNA_512 ID=mRNA_512|Name=jgi.p|Nanoce1779_2|668524|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_3:1238976..1241216- (Nannochloropsis oceanica)
ATGAGCGCTCCTACTACTTCTATTCCCATCGTGATGCCCCACTTCACGAG
CAGTGGCAGTAGCAGTGCTGGCAGTCGTCGGACCTTGTTCCTGGTCATGC
TGATGCTGGTTGTCCTCGGTGTGCTGCTCTCCACCGCCCTCTTTGTCCTA
CGAACGAAGCAACAACAGCAGCAGAGACAAGATCAGCGGCAGCAATGGCA
GCATCGGCAATACTGCGAGGACGTAAAGCCCCCCCTTTCAAGCGTGCCTG
TCTTCTTCACAGCCGGGGTCACGGCGGAGACGCAACGTGCAGCTTACTCT
ACTTTGAAAGGGACTTTGGAACAATACCGGTCGGAATTAGGATTGAGAAT
AAATGCACTGCATAACATGACTTATGTGCGGCTGCCGGGATGGCAGGAAG
AGGAAGATGATGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAGGAAAAGCATGCCGGCCTTCGGTCGAAGGCGAG
AGCTAATTTGACAGCGAGTTTGCAAGCACGAATGTGGAAAGAATTCGAGA
AAATTCCTGCGTGCTGGCAACAAAATGAGGACCTCTTAACCCTACTCCTA
CGTTTTCCTAAGCCGACCTCTGCCTTGTTACCCGCGGCCCAAGGAACGCC
AAAGCAACGACCTAAACAACGACAAAAAGAGCAATCGACATCTGTAACAC
CTACTAGCAGCTCATATAACGATGCCATCCAAATCTTTACTCACCTCTAT
CGAGATTGGACGGATGACGGCCGTGAGCTCCGCCGCAAGACCTACATGCC
CATCCTCCGAGCCGCTGCTCGTTTATTCCAACCATCCTCGCCAAGCATGG
CACGGAATGATGGCATGGTGGATGCGATAGAGATAAAGTATATTTTGGTT
CCAGGCGCAGGCCTAGGTCGTCTGGCGTTCGAGCTTGCTTTTGGTCAGCG
GCCCTCGCAGCAGCTGCAGCCGTGCTTCCATGTCACGGCTATGGATATCA
GCCCTGTCATGATCGCAGCGACGGCGGCTGTGTTAGATGTTGTATTTGCA
TCAAAGACGGAGGAGGGAGAGGAGGGGAGAGGAGGGAAAGAGGGCGCAAA
TTTCTTTTATCCCTTTTTGCATGATCCCCTTCTGAATCAGCGTTCGCATG
CTCGTCGCTTCCACGCCGCGTCTTTCCCCGATACGGCAGCTGTGAATCAA
CTTCAGTCGCATCGAATGAAAGGAAAACAAAGACATCATGCCACGTCCTT
CTTCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCT
CCTCCTCGGCCTCCTTGCCCTCCTCTTCCCTCGCCCTCGAACTCGGCAAC
TTCCTCCACCTCCCCCTCCACTCGTCCTCCTCGTGGTCCCAATCCCAACA
CGCAATAATCACCTGCTATTTCCTCGATACAGCCCCGAACCCTCTCTCCT
ACCTACGCACTATTCACTCCCTCCTCAAAGAGGGGGGGTATTGGATCAAT
CTCGGCCCTCTTAACTACCACACTACTCTCCCCAACGGCGCCGTGCAACT
GACGGTGGAGGAAATAGAAATAGCAGCGGAAGGAATGGGTTTCCGGAAGA
TCAAGGAGGGCGAGGACGAGGACGGGGAGGAGGAGGAGGGACAGCTGGAA
TGGTGTGCATATCGGCCAGAGCCTCCGAGGGTGGGAGGGAAGGAGGGGGA
GGGAGAGGGAGGGAGGGAGGAAGGATCAGCATTTTTGCGTGTAGATGTGT
ACAAGCCGGTCATGAGTATATTTCAGAGGATAAAAACGAGGTAG

Synonyms

Publications