jgi.p|Nanoce1779_2|591455, mRNA_5119 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591455
Unique NamemRNA_5119
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length782
Alignment locationscaffold_12:513416..514762 -

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Properties
Property NameValue
TranscriptId591541
TrackFilteredModels2
ProteinId591455
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:513416..514762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591455gene_5119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591455mRNA_5119-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5119CDS_5119Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5119 ID=mRNA_5119|Name=jgi.p|Nanoce1779_2|591455|organism=Nannochloropsis oceanica|type=mRNA|length=782bp
ACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAGT
CTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAAC
GGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGTGCACA
ACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGTG
CTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTGT
GCTGCCCGATCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCAG
CAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCCC
GTCAAGCCTGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCGT
CGCCTACGACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTGC
TTACCTGGACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCGT
GACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTGG
AATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAGG
TTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGAC
ATCAAGATTAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCAC
GGAGGTGAAATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGATG
TGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGG
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protein sequence of jgi.p|Nanoce1779_2|591455

>mRNA_5119-protein ID=mRNA_5119-protein|Name=jgi.p|Nanoce1779_2|591455|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MVAKFPMRTCLLASLPLLLQAFLLSSPQRQTAFSYSHRSAKTITQVHNLD
GVDIPGPLNPLANVLLVKVKDAADMSAGGIVLPDQAKEKPTEGEVISAGP
GRLHPETAVLMPMPVKPGDKVLYGKFDGMSVAYDGAPHVLIRDEDILLTW
TGPKMTVAAVETVRDRILVKVKKAQDKSAGGILLAPSMSKARPTEGEVIK
VGPGRIASNGQVADIKIKAGDSVKFKDFAGTEVKLEDENYLVMYSVDVLA
RW*
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mRNA from alignment at scaffold_12:513416..514762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5119 ID=mRNA_5119|Name=jgi.p|Nanoce1779_2|591455|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_12:513416..514762- (Nannochloropsis oceanica)
ACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAGT
CTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAAC
GGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGGTACGC
AGATACGATCGAAATGGAAAGGAGGAACGCTGAATCCTTGCATGTTGTCT
GTATGCTTACATACTTATTAGCCTGACCTGACCTTTTCACATAATTCAAA
GTGCACAACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGC
CAACGTGCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAG
GCATTGTGCTGCCCGATCAGGTACATATATACATAATCACATTGATTTAT
AACTGGAGATAGGTATTGAAATCTGGGTAGGACAACAAATTGTACGAAGG
GCTCGTGGCATGCGGTCTAAGACCTGTCTGTTTCCCGCAGCCCCTTACCA
CCTCCATCCGCCTTATCTTCTTCCTTTCCTCCTTCCCAACCGAATTCAAT
AAACCCCTCATTCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTC
AGCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGC
CCGTCAAGCCTGGTACGTAAATTAAATTGTTTTAGTGCAGGTGCTGGATT
GCTTGAAGAGATGAAGTTTGAAAGGGATGATATTGTTGAAGAATGGGAGG
AGGCAGCAGGTGTCAGATTATTTGTTAAGTGTTCGTTTCCTCGTGTGTTT
TGTTTTATGTCTGCACGCGGCAAATTTTAAAGATTGAAAAGGAGGAGAGA
CAGCTCTACTTACCCCCTTAAAATCAACACCTACCCTTGTTCCCTCACTT
CCCCCCCTCCACCTCCAATCACCAGGCGACAAAGTCCTCTATGGAAAATT
TGACGGCATGTCCGTCGCCTACGACGGAGCCCCCCACGTGCTGATCCGCG
ATGAGGACATCTTGCTTACCTGGACTGGGCCTAAAATGACTGTTGCTGCT
GTTGAGACTGTCCGTGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGA
TAAGAGCGCAGGTGGAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGC
CGACGGAGGGGGAGGTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAAT
GGGCAGGTTGCTGACATCAAGATTAAGGCAGGAGATAGTGTGAAATTTAA
GGACTTTGCGGGCACGGAGGTGAAATTGGAGGATGAGAATTACTTGGTCA
TGTACTCAGTTGATGTGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGG
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Coding sequence (CDS) from alignment at scaffold_12:513416..514762-

>mRNA_5119 ID=mRNA_5119|Name=jgi.p|Nanoce1779_2|591455|organism=Nannochloropsis oceanica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_12:513416..514762- (Nannochloropsis oceanica)
GCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCGTCGCCTACGAC
GGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTGCTTACCTGGAC
TGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCGTGACCGCATCC
TAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTGGAATCTTGTTG
GCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAGGTTATTAAGGT
CGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGACATCAAGATTA
AGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCACGGAGGTGAAA
TTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGATGTGTTGGCGCG
TTGGTAAGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCAGCAGGTC
CAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCCCGTCAAG
CCTGTGCACAACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCT
GGCCAACGTGCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTG
GAGGCATTGTGCTGCCCGATCAGATGGTGGCCAAGTTCCCCATGCGCACC
TGTCTGCTGGCAAGTCTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTC
ACCTCAGAGACAAACGGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCA
TCACCCAAGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCGTC
GCCTACGACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTGCT
TACCTGGACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCGTG
ACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTGGA
ATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAGGT
TATTAAGGTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGACA
TCAAGATTAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCACG
GAGGTGAAATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGATGT
GTTGGCGCGTTGGTAAGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTT
CAGCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATG
CCCGTCAAGCCTGTGCACAACCTTGACGGCGTGGACATCCCTGGCCCTTT
GAACCCCCTGGCCAACGTGCTGCTTGTCAAAGTCAAGGATGCCGCCGACA
TGTCTGCTGGAGGCATTGTGCTGCCCGATCAGATGGTGGCCAAGTTCCCC
ATGCGCACCTGTCTGCTGGCAAGTCTGCCCCTTCTCCTCCAGGCTTTCTT
GCTTTCTTCACCTCAGAGACAAACGGCCTTCTCCTACTCCCACCGTAGCG
CCAAGACCATCACCCAAGGCGACAAAGTCCTCTATGGAAAATTTGACGGC
ATGTCCGTCGCCTACGACGGAGCCCCCCACGTGCTGATCCGCGATGAGGA
CATCTTGCTTACCTGGACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGA
CTGTCCGTGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGC
GCAGGTGGAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGCCGACGGA
GGGGGAGGTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGG
TTGCTGACATCAAGATTAAGGCAGGAGATAGTGTGAAATTTAAGGACTTT
GCGGGCACGGAGGTGAAATTGGAGGATGAGAATTACTTGGTCATGTACTC
AGTTGATGTGTTGGCGCGTTGGTAAGCCAAGGAGAAGCCCACCGAAGGCG
AAGTTATTTCAGCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTT
ATGCCTATGCCCGTCAAGCCTGTGCACAACCTTGACGGCGTGGACATCCC
TGGCCCTTTGAACCCCCTGGCCAACGTGCTGCTTGTCAAAGTCAAGGATG
CCGCCGACATGTCTGCTGGAGGCATTGTGCTGCCCGATCAGATGGTGGCC
AAGTTCCCCATGCGCACCTGTCTGCTGGCAAGTCTGCCCCTTCTCCTCCA
GGCTTTCTTGCTTTCTTCACCTCAGAGACAAACGGCCTTCTCCTACTCCC
ACCGTAGCGCCAAGACCATCACCCAAGGCGACAAAGTCCTCTATGGAAAA
TTTGACGGCATGTCCGTCGCCTACGACGGAGCCCCCCACGTGCTGATCCG
CGATGAGGACATCTTGCTTACCTGGACTGGGCCTAAAATGACTGTTGCTG
CTGTTGAGACTGTCCGTGACCGCATCCTAGTTAAGGTCAAGAAGGCACAA
GATAAGAGCGCAGGTGGAATCTTGTTGGCCCCCTCCATGAGCAAGGCACG
GCCGACGGAGGGGGAGGTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAA
ATGGGCAGGTTGCTGACATCAAGATTAAGGCAGGAGATAGTGTGAAATTT
AAGGACTTTGCGGGCACGGAGGTGAAATTGGAGGATGAGAATTACTTGGT
CATGTACTCAGTTGATGTGTTGGCGCGTTGGTAAGCCAAGGAGAAGCCCA
CCGAAGGCGAAGTTATTTCAGCAGGTCCAGGGCGATTGCACCCGGAGACG
GCTGTCCTTATGCCTATGCCCGTCAAGCCTGTGCACAACCTTGACGGCGT
GGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGTGCTGCTTGTCAAAG
TCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTGTGCTGCCCGATCAG
ATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAGTCTGCCCCT
TCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAACGGCCTTCT
CCTACTCCCACCGTAGCGCCAAGACCATCACCCAAG
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Synonyms
Publications