jgi.p|Nanoce1779_2|591448, mRNA_5117 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591448
Unique NamemRNA_5117
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length778
Alignment locationscaffold_12:509976..510753 -

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Properties
Property NameValue
TranscriptId591534
TrackFilteredModels2
ProteinId591448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:509976..510753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591448gene_5117Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591448mRNA_5117-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5117CDS_5117Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5117 ID=mRNA_5117|Name=jgi.p|Nanoce1779_2|591448|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
GGGTGGCTGAGGGGACGAATTTTCTTCTTTTTCGCACCCTTTCAAAAACC
ATCAGAGAACGAGAAGTCCACAGACAGTAACAGGTCGTGTGCCTGATGAC
TATGACGAAGGTGTGCGTGTGTTATGACCCGCGGGGGTAGAGTTGGAGAA
GGGAGGAAGAGAGATGGAGAGAACTAAGCGTCGACGATCACCGACCGTCC
TCTCCCTTCTCTGCATTGCTCTGGCCCATTTTGACGGTCGAAGTGCCTTC
TATTACTGTTCGAAGGACCTTGAAAGAAGAGGGAAAGAAGAGAGGGGAAA
GCACTCTCACACAGCAGGAAGCCGGAGAAGAGGCAGAGTCAGCCATACGA
GACAAGAAGAAAAAACCAATTTTGTGCGACAGAGTCAAGGGTTGGGGTTA
GACAGAGAGAAGGGTTGGCAGTAAGAGATGCCCATTAAATAACGGACTCA
GGGTGACGAGGCCCTCATGCGCCAACATGGGAAGAGGAAGAAAGGGGGTC
AGGGAGAGGAGTTTTGTACAATAGACTTTCCTGATCTTTTCGTGCCCTTT
TCCGGAGGGAGTTAACTCCCCCACTCCCCCATAAATACTTGATGATATTT
TCGACCTTTTTGTGGACGCATGAACGGAAAGCGAGCTACCGAGCACCATG
CCCGCGCGTGTGAGAAGGAACGAAGGGCAGACGATATTGTCCTAGGTCGA
GATTTACCACGGAGGAAGATGACGAAGAAAAATGGGTCCAATCACTCGGC
CAATATAAAAAACGGTTGTGAGGAAATG
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protein sequence of jgi.p|Nanoce1779_2|591448

>mRNA_5117-protein ID=mRNA_5117-protein|Name=jgi.p|Nanoce1779_2|591448|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MERTKRRRSPTVLSLLCIALAHFDGRSAFYYCSKDLERRGKEERGKHSHT
AGSRRRGRVSHTRQEEKTNFVRQSQGLGLDREKGWQ*
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mRNA from alignment at scaffold_12:509976..510753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5117 ID=mRNA_5117|Name=jgi.p|Nanoce1779_2|591448|organism=Nannochloropsis oceanica|type=mRNA|length=778bp|location=Sequence derived from alignment at scaffold_12:509976..510753- (Nannochloropsis oceanica)
GGGTGGCTGAGGGGACGAATTTTCTTCTTTTTCGCACCCTTTCAAAAACC
ATCAGAGAACGAGAAGTCCACAGACAGTAACAGGTCGTGTGCCTGATGAC
TATGACGAAGGTGTGCGTGTGTTATGACCCGCGGGGGTAGAGTTGGAGAA
GGGAGGAAGAGAGATGGAGAGAACTAAGCGTCGACGATCACCGACCGTCC
TCTCCCTTCTCTGCATTGCTCTGGCCCATTTTGACGGTCGAAGTGCCTTC
TATTACTGTTCGAAGGACCTTGAAAGAAGAGGGAAAGAAGAGAGGGGAAA
GCACTCTCACACAGCAGGAAGCCGGAGAAGAGGCAGAGTCAGCCATACGA
GACAAGAAGAAAAAACCAATTTTGTGCGACAGAGTCAAGGGTTGGGGTTA
GACAGAGAGAAGGGTTGGCAGTAAGAGATGCCCATTAAATAACGGACTCA
GGGTGACGAGGCCCTCATGCGCCAACATGGGAAGAGGAAGAAAGGGGGTC
AGGGAGAGGAGTTTTGTACAATAGACTTTCCTGATCTTTTCGTGCCCTTT
TCCGGAGGGAGTTAACTCCCCCACTCCCCCATAAATACTTGATGATATTT
TCGACCTTTTTGTGGACGCATGAACGGAAAGCGAGCTACCGAGCACCATG
CCCGCGCGTGTGAGAAGGAACGAAGGGCAGACGATATTGTCCTAGGTCGA
GATTTACCACGGAGGAAGATGACGAAGAAAAATGGGTCCAATCACTCGGC
CAATATAAAAAACGGTTGTGAGGAAATG
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Coding sequence (CDS) from alignment at scaffold_12:509976..510753-

>mRNA_5117 ID=mRNA_5117|Name=jgi.p|Nanoce1779_2|591448|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_12:509976..510753- (Nannochloropsis oceanica)
ATGGAGAGAACTAAGCGTCGACGATCACCGACCGTCCTCTCCCTTCTCTG
CATTGCTCTGGCCCATTTTGACGGTCGAAGTGCCTTCTATTACTGTTCGA
AGGACCTTGAAAGAAGAGGGAAAGAAGAGAGGGGAAAGCACTCTCACACA
GCAGGAAGCCGGAGAAGAGGCAGAGTCAGCCATACGAGACAAGAAGAAAA
AACCAATTTTGTGCGACAGAGTCAAGGGTTGGGGTTAGACAGAGAGAAGG
GTTGGCAGTAA
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Synonyms
Publications