jgi.p|Nanoce1779_2|591443, mRNA_5115 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591443
Unique NamemRNA_5115
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_12:506652..507447 -

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Properties
Property NameValue
TranscriptId591529
TrackFilteredModels2
ProteinId591443
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:506652..507447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591443gene_5115Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591443mRNA_5115-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5115CDS_5115Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5115 ID=mRNA_5115|Name=jgi.p|Nanoce1779_2|591443|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
TGTTGTTGTTGTTGTTGCTGTTGATGATCTGCTGCTGCTGCTGCTGCTGT
TGTAGTGGTTGGGGCTGCGGAGTTTGCTGTTGCTGTTGCTGCTGCTGCTG
CTGCATGTGTGCTTGTACTTGCTGTTGCTGGAACCGAAAGTGCTGGTGCT
GTTGGTGCTGCGGCTGTTGGTGCTGCTGCTGGTGCGGCTGGGACAGAGCC
GTGCCTTGCCTTCCGTCCGACTCGCTGGTAGCCGAAGAGGAGGCAGCCTC
GACCAACATGTCAAAGCGCATAGGCTGCTCGCCTCCTGCACCTCCTGCAC
CCCCTGCTGCTACTGCTGCAGCGTGCGCGGATGGGGAGGGTTGCTGGGCA
AAATAGGGGGGCATGGCAGCAGCAGGTAGTTGGAGCTGGTGCAGCATCGG
TACAGACTGCATTAGCATATGCGGAGGCAAGGCCGCGGCGATTGCTGCTG
CTGCTGCTGTTGTTGCTGGGGAGGGTTGAAGGGGGTATTGCATGTCTCCA
TTGTTGCCGCGGGAGAGGAATAAACGGAAATTGTCGTTGGATGCTTGATC
GTTCAGAGCGGCGAGAAGTACGGTGTGGTTGGGATGGTTCGTGAGATCGC
TGAAGCTTTGAGGGGTACCGCTGCCGTCCAGGAGGGAATGGATGGTTGAG
GAGGGAGGGCCATGTTGAAGAAGGGATTGGAATTGATTGCTGGGGTAGTG
TAGGCTTTGCTGTTGTTGCTGTTGTTGCT
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protein sequence of jgi.p|Nanoce1779_2|591443

>mRNA_5115-protein ID=mRNA_5115-protein|Name=jgi.p|Nanoce1779_2|591443|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MGRVAGQNRGAWQQQVVGAGAASVQTALAYAEARPRRLLLLLLLLLGRVE
GGIACLHCCRGRGINGNCRWMLDRSERREVRCGWDGS*
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mRNA from alignment at scaffold_12:506652..507447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5115 ID=mRNA_5115|Name=jgi.p|Nanoce1779_2|591443|organism=Nannochloropsis oceanica|type=mRNA|length=796bp|location=Sequence derived from alignment at scaffold_12:506652..507447- (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGCTGTTGATGATGATGATGATGATGCTGTGGTTG
TTGCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCT
GCTGCTGCTGCTGCTGTTGTAGTGGTTGGGGCTGCGGAGTTTGCTGTTGC
TGTTGCTGCTGCTGCTGCTGCATGTGTGCTTGTACTTGCTGTTGCTGGAA
CCGAAAGTGCTGGTGCTGTTGGTGCTGCGGCTGTTGGTGCTGCTGCTGGT
GCGGCTGGGACAGAGCCGTGCCTTGCCTTCCGTCCGACTCGCTGGTAGCC
GAAGAGGAGGCAGCCTCGACCAACATGTCAAAGCGCATAGGCTGCTCGCC
TCCTGCACCTCCTGCACCCCCTGCTGCTACTGCTGCAGCGTGCGCGGATG
GGGAGGGTTGCTGGGCAAAATAGGGGGGCATGGCAGCAGCAGGTAGTTGG
AGCTGGTGCAGCATCGGTACAGACTGCATTAGCATATGCGGAGGCAAGGC
CGCGGCGATTGCTGCTGCTGCTGCTGTTGTTGCTGGGGAGGGTTGAAGGG
GGTATTGCATGTCTCCATTGTTGCCGCGGGAGAGGAATAAACGGAAATTG
TCGTTGGATGCTTGATCGTTCAGAGCGGCGAGAAGTACGGTGTGGTTGGG
ATGGTTCGTGAGATCGCTGAAGCTTTGAGGGGTACCGCTGCCGTCCAGGA
GGGAATGGATGGTTGAGGAGGGAGGGCCATGTTGAAGAAGGGATTGGAAT
TGATTGCTGGGGTAGTGTAGGCTTTGCTGTTGTTGCTGTTGTTGCT
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Coding sequence (CDS) from alignment at scaffold_12:506652..507447-

>mRNA_5115 ID=mRNA_5115|Name=jgi.p|Nanoce1779_2|591443|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_12:506652..507447- (Nannochloropsis oceanica)
ATGGGGAGGGTTGCTGGGCAAAATAGGGGGGCATGGCAGCAGCAGGTAGT
TGGAGCTGGTGCAGCATCGGTACAGACTGCATTAGCATATGCGGAGGCAA
GGCCGCGGCGATTGCTGCTGCTGCTGCTGTTGTTGCTGGGGAGGGTTGAA
GGGGGTATTGCATGTCTCCATTGTTGCCGCGGGAGAGGAATAAACGGAAA
TTGTCGTTGGATGCTTGATCGTTCAGAGCGGCGAGAAGTACGGTGTGGTT
GGGATGGTTCGTGA
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Synonyms
Publications