jgi.p|Nanoce1779_2|591418, mRNA_5111 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591418
Unique Name	mRNA_5111
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2447
Alignment location	scaffold_12:489472..491918 -

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Properties


Property Name	Value
TranscriptId	591504
Track	FilteredModels2
ProteinId	591418

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:489472..491918 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591418	gene_5111	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591418	mRNA_5111-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5111	CDS_5111	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:489472..491918-
coding sequence from alignment at scaffold_12:489472..491918-

mRNA sequence

>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Nanoce1779_2|591418|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp
ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC
GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA
GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC
GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC
GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA
AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC
GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA
CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG
AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA
TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC
ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG
TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG
GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA
CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA
AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC
GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA
GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC
AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC
GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA
GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC
CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC
AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA
GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA
ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC
AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC
CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC
CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG
TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA
GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG
GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC
AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT
CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA
AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG
AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG
AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT
TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC
GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA
GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG
GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG
GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA
TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT
ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT
ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT
CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG
GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG
TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC
CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA
TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA
AACAACAAAATGAAATCGACCAAAATTTAAACGTGTACATATATGTA

protein sequence of jgi.p|Nanoce1779_2|591418

>mRNA_5111-protein ID=mRNA_5111-protein|Name=jgi.p|Nanoce1779_2|591418|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MRRAIVRASFGGLGGLQTDDGTTLSAPTPWSSSVRRLTKRRYQWVIGVMV
GSFIFAASLLTYTYTTRTGFANIEDTSDIHVVSLVAQAEPAASSLTPLLE
PAAPASPVEEDGRQHREQPPKTLHVVLQPKQEPLLDKSVLAAQEEKAVGE
GNELEVKSVEMGKKDKMKASENSTTGALEREAETTVLKKKKKEESSDMDA
ESSHHDIAVDALNDISTDWREEKEEEKEEEKEEKIEEQQEEMENMEKVVE
EEEEDGNIDEVDEQPQRKEQQQQHVEEPQEAGLDLAAVPVDKPHADTDLA
RGTQNKKQEAPYQQQQQHVEQKQKQKHVESGDAKEETKNEVMVPQMLYCL
PGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIP
GLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPF
FIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQT
FLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYL
ATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKEREANVMP
LHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDK
SIALSTLGLELEEGGDDDVNAVLSEAWREQQKANTKGQGTVA*

mRNA from alignment at scaffold_12:489472..491918-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Nanoce1779_2|591418|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at scaffold_12:489472..491918- (Nannochloropsis oceanica)
ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC
GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA
GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC
GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC
GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA
AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC
GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA
CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG
AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA
TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC
ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG
TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG
GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA
CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA
AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC
GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA
GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC
AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC
GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA
GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC
CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC
AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA
GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA
ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC
AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC
CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC
CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG
TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA
GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG
GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC
AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT
CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA
AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG
AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG
AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT
TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC
GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA
GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG
GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG
GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA
TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT
ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT
ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT
CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG
GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG
TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC
CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA
TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA
AACAACAAAATGAAATCGACCAAAATTTAAACGTGTACATATATGTA

Coding sequence (CDS) from alignment at scaffold_12:489472..491918-

>mRNA_5111 ID=mRNA_5111|Name=jgi.p|Nanoce1779_2|591418|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_12:489472..491918- (Nannochloropsis oceanica)
ATGCGGCGCGCTATCGTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCA
GACAGATGATGGGACGACACTGTCTGCGCCTACACCCTGGTCGTCGTCAG
TTCGGCGGCTGACCAAACGCCGTTATCAGTGGGTCATAGGGGTGATGGTG
GGCAGCTTCATCTTCGCCGCCTCCCTGCTGACCTATACGTACACGACGCG
CACGGGCTTCGCCAACATCGAGGATACCTCCGACATCCACGTTGTTTCCT
TGGTGGCGCAAGCCGAGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAG
CCCGCCGCTCCCGCATCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGA
ACAGCCACCAAAAACATTGCATGTTGTATTACAGCCGAAACAAGAGCCTT
TGCTGGATAAATCAGTGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAA
GGGAATGAATTAGAGGTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGAT
GAAAGCGTCTGAGAACAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAA
CTACAGTCTTAAAAAAAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCT
GAAAGTTCACATCACGACATCGCTGTTGATGCGTTGAATGACATCTCTAC
GGATTGGAGAGAGGAGAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAA
AAATTGAAGAGCAACAGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAG
GAAGAAGAAGAAGACGGAAACATAGATGAAGTGGATGAGCAGCCTCAGCG
TAAGGAGCAGCAGCAGCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAG
ATCTCGCTGCTGTCCCAGTCGATAAGCCCCATGCTGACACGGATTTGGCC
CGTGGCACCCAGAACAAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCA
GCATGTGGAGCAGAAGCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCA
AGGAAGAGACCAAAAACGAGGTGATGGTACCTCAAATGTTGTATTGCTTG
CCGGGAGGTGGCTTCAATGATATTGTCGTCCAACTGTGGCGGTGCGTGAA
ATATGCCGTCAAGACCGATCGAGTGCTGATCCTCGGGTGGGAGAATTACT
TGCCTGTACTACCCCCTTATGAGCAGTACTTTGATCTGAAAAACATCCCG
GGCCTTAAGCTCATGTCACAATGGGAGGCGGCGTCTATCATTCGCGCTGC
ACAGGCACGTGGACAGGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCT
TGACGGCCTTGCTGGGTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTC
TTCATTGATGTTGCCAGTCTACCGAATTATGTATTTCATCCCAAAAAACA
GTATACGTACCATGTCCTACTGTATCACAAAAAGGGAAACCAAGGCACGC
CTGAGGCTACCTTAAAACACCTCATCTTCTCCCGAGAAATCAAACAAACC
TTCCTCTCCCGTTGGAGCCAGCTCCCAAAACCCTACATAGGCATGCATGT
CCGAGGAACGGACCGAAAATGCGGTAATAAGATGACACTCAAAGTATTTG
AAAAGACTCAAACGTTACGTGAACATTTAAAAGGAGCGCCTGTCTACCTC
GCGACAGACAACCCCGAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGA
GAAGCAGGGAAGGGAGATTACGTCATTCACATATTTTCCGGCCAAGAAGG
AGGAGGAGAATAGGGGAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCG
CTTCATTTAAACAAGGTACTGAGCGACGAGGAGAAGCACCAGACAAACAT
TGACGGGTTTGTGGATTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCA
TGTCTTGTGGCGGGTACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAG
AGTATTGCGCTCAGTACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGA
CGATGTGAATGCAGTCTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAA
ATACGAAAGGACAAGGAACAGTCGCATGA

Synonyms

Publications