jgi.p|Nanoce1779_2|591417, mRNA_5110 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591417
Unique NamemRNA_5110
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1228
Alignment locationscaffold_12:488244..489471 +

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Properties
Property NameValue
TranscriptId591503
TrackFilteredModels2
ProteinId591417
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:488244..489471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591417gene_5110Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591417mRNA_5110-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5110CDS_5110Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5110 ID=mRNA_5110|Name=jgi.p|Nanoce1779_2|591417|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp
ACAGGCGAGGCGCAAGGGGGTACAGAATATCACACGCAAGCAAACACCAA
AACAATTACAATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCAT
CCCGCATGGTGTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTC
ATAATTGCGCGTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGT
GGCAGGTCAAGATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATG
CCTCCACCAGCTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTG
CCACGCTTGGCCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTAC
CGTCTCAACGACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGG
ACCCTAATTCCGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACT
GACATCTTAATTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCAT
GGTGTACAAATCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATT
TCTTCTTGGTGACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCC
AAGATGTTTCGGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTC
TTGCCATACCATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAG
CTGCGGGGCCTGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACA
CTGGAGGGTATGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGT
GCAAGGAGGTGTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGC
TACAGTCACCACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAG
TTACATGCGAACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGC
GCCGATGAGGGAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATA
GGCGATATGAGAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGAC
AGCTTGAAGACACGACGTTGAGATGAAAGAAGGGTGAGGTACGCCTGAGC
TTGGTAGCAATACACTACCTCAGTATGTACGTGTAGGGGTGTTGTCATTT
AACTAGGGGAGCGAAGAAGAAAGGCATTTATGCATATACATATACATTTA
CATATATAAATACACATATAAACACACA
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protein sequence of jgi.p|Nanoce1779_2|591417

>mRNA_5110-protein ID=mRNA_5110-protein|Name=jgi.p|Nanoce1779_2|591417|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGRYRNWPVNYSASRMVLVLLSLIFGAQLVIIARYEKPSPATTTAAVAGQ
DVAAPAAVSLTADASTSSQSSSLDTVDPPLPRLAAPLIVACLANMRTVST
TAYNLARVLMERVDPNSASGWEKDVTGTNTDILIRDVVPKARGLVSMVYK
SHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHT
MAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGG
VVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMR
EALEADERCSAWHRRYERMFPPGTTELVRDSLKTRR*
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mRNA from alignment at scaffold_12:488244..489471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5110 ID=mRNA_5110|Name=jgi.p|Nanoce1779_2|591417|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at scaffold_12:488244..489471+ (Nannochloropsis oceanica)
ACAGGCGAGGCGCAAGGGGGTACAGAATATCACACGCAAGCAAACACCAA
AACAATTACAATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCAT
CCCGCATGGTGTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTC
ATAATTGCGCGTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGT
GGCAGGTCAAGATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATG
CCTCCACCAGCTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTG
CCACGCTTGGCCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTAC
CGTCTCAACGACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGG
ACCCTAATTCCGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACT
GACATCTTAATTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCAT
GGTGTACAAATCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATT
TCTTCTTGGTGACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCC
AAGATGTTTCGGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTC
TTGCCATACCATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAG
CTGCGGGGCCTGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACA
CTGGAGGGTATGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGT
GCAAGGAGGTGTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGC
TACAGTCACCACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAG
TTACATGCGAACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGC
GCCGATGAGGGAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATA
GGCGATATGAGAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGAC
AGCTTGAAGACACGACGTTGAGATGAAAGAAGGGTGAGGTACGCCTGAGC
TTGGTAGCAATACACTACCTCAGTATGTACGTGTAGGGGTGTTGTCATTT
AACTAGGGGAGCGAAGAAGAAAGGCATTTATGCATATACATATACATTTA
CATATATAAATACACATATAAACACACA
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Coding sequence (CDS) from alignment at scaffold_12:488244..489471+

>mRNA_5110 ID=mRNA_5110|Name=jgi.p|Nanoce1779_2|591417|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_12:488244..489471+ (Nannochloropsis oceanica)
ATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCATCCCGCATGGT
GTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTCATAATTGCGC
GTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGTGGCAGGTCAA
GATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATGCCTCCACCAG
CTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTGCCACGCTTGG
CCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTACCGTCTCAACG
ACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGGACCCTAATTC
CGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACTGACATCTTAA
TTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCATGGTGTACAAA
TCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATTTCTTCTTGGT
GACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCCAAGATGTTTC
GGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTCTTGCCATACC
ATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAGCTGCGGGGCC
TGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACACTGGAGGGTA
TGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGTGCAAGGAGGT
GTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGCTACAGTCACC
ACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAGTTACATGCGA
ACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGCGCCGATGAGG
GAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATAGGCGATATGA
GAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGACAGCTTGAAGA
CACGACGTTGA
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Synonyms
Publications