jgi.p|Nanoce1779_2|577538, mRNA_511 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577538
Unique Name	mRNA_511
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_3:1237264..1238942 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577624
Track	FilteredModels2
ProteinId	577538

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1237264..1238942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577538	gene_511	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577538	mRNA_511-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_511	CDS_511	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1237264..1238942+
coding sequence from alignment at scaffold_3:1237264..1238942+

mRNA sequence

>mRNA_511 ID=mRNA_511|Name=jgi.p|Nanoce1779_2|577538|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT
TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG
TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT
CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA
AAAGGACACTAAGACGTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAAC
TCCTCGCGCCCGCCACCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCG
TTTCATCCCGCCCTCTTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCT
TGAAACCGTGCGATCCGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCT
CAGCCGGGAGCCGGGTAAACAAAGACGCGGAATCACTCCTCCGCTACGGA
CTACCCATCAATAGCAAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGG
GGTGAAAGAAAACGTCCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACG
TCAGCCGGGCCAAGACGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAA
GCCGTCCGGCCCGACGGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAAT
CGACACAAAACTAGACGAAATTGCGACAACTTTCAATGAAGACGCCGGGC
GGGGCTCGGAGCAGGAACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAA
GCCGCGGCCTCCCGCTCCATCACGGAACTGCAAGAGCTCATGGTGCCGGC
CGGATACACCGTTAAGGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGC
AGGGCCGGGCAGAGGTGGATATGACGATGAAGAAGGCCGAGGCCGGGGAG
AAGTTTGAGATAAAAGGGAAGCTGTATGACGCCATCAATATCAAGATGGT
GATTGACGGGTTCAACGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGG
TGCAGAAAGGCTTTTATAACAACAGACCGATCACGCGGAGCGATGGTTTT
GTCGTCCAATTCGGTGACCCGGAGCCTGAGGGGGAGGTGCATGGCTATGT
GCCGCCAGGGCAGAAGGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGA
CGCAGGATGACGCACCAATGTATGGGACGACGACTGAGGATGATGGTAGG
GGCTATAGTGCAACGAGATTGCCATTCCAGGCATACGGAGCGATAGGGAT
GGCGAGGGAGGAGTATGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGT
TGTTGTTTGAGAGTGACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGG
CGGTATGCATGCCTCGGGTACACGATTGAGAATGCCGAGTTGCTGGCGGG
CGTGAAGGAGGGTGATGTCATCGTGAGCGCTAAAGTGGCGAAGGGGGCGG
AGAACTTGGTGCCGGGGAAGAAGCAGTAGAGGGAGGGAGGAGGG

protein sequence of jgi.p|Nanoce1779_2|577538

>mRNA_511-protein ID=mRNA_511-protein|Name=jgi.p|Nanoce1779_2|577538|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MKVILSSAVLALALGPVALDAFLLPPAPLRSGAVGLMTMRAEKDTKTSSS
GWHKIPKKLLAPATLAFATWQSTFSFHPALLGSTSSNLMPRLETVRSVQA
AGRQNAPTSAGSRVNKDAESLLRYGLPINSKEARDLQEAIEGVKENVRSK
RLSEGKKDVSRAKTILSSKKEKLLKAVRPDGKARATELLSEIDTKLDEIA
TTFNEDAGRGSEQERAKLDLAYKQQAAASRSITELQELMVPAGYTVKVPE
EFAYLPQLQGRAEVDMTMKKAEAGEKFEIKGKLYDAINIKMVIDGFNAPV
TAGNFVDLVQKGFYNNRPITRSDGFVVQFGDPEPEGEVHGYVPPGQKEVR
KIPLEIFVTQDDAPMYGTTTEDDGRGYSATRLPFQAYGAIGMAREEYVAD
SASSQVFWLLFESDLTPAGKNLLDGRYACLGYTIENAELLAGVKEGDVIV
SAKVAKGAENLVPGKKQ*

mRNA from alignment at scaffold_3:1237264..1238942+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_511 ID=mRNA_511|Name=jgi.p|Nanoce1779_2|577538|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp|location=Sequence derived from alignment at scaffold_3:1237264..1238942+ (Nannochloropsis oceanica)
ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT
TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG
TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT
CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA
AAAGGTACGATGCCCGCCCTTTTTGATTCTTGTGAGGGTGCAGCTCTCGA
GGAGATAATGCCGTCGTCTGAAAGGCTCCAGCAACGCGTCCACCCATCCA
TTCCGATCCTTTGGGTGGCTATTATCTAACAATTTTTCTGCCTCGTGAAA
CGACCCGTCCTTCTCTTTCTCCCTCCCTCCCTCCCACAGGACACTAAGAC
GTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCA
CCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTC
TTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATC
CGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGG
TAAACAAAGACGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGC
AAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGT
CCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGA
CGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGAC
GGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGA
CGAAATTGCGACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGG
AACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGC
TCCATCACGGAACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAA
GGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGG
TGGATATGACGATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAA
GGGAAGCTGTATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAA
CGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTT
ATAACAACAGACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGT
GACCCGGAGCCTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAA
GGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCAC
CAATGTATGGGACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACG
AGATTGCCATTCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTA
TGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTG
ACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTC
GGGTACACGATTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGA
TGTCATCGTGAGCGCTAAAGTGGCGAAGGGGGCGGAGAACTTGGTGCCGG
GGAAGAAGCAGTAGAGGGAGGGAGGAGGG

Coding sequence (CDS) from alignment at scaffold_3:1237264..1238942+

>mRNA_511 ID=mRNA_511|Name=jgi.p|Nanoce1779_2|577538|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_3:1237264..1238942+ (Nannochloropsis oceanica)
ATGAAAGTTATCCTCTCCTCCGCCGTCTTGGCCTTGGCCCTGGGCCCCGT
CGCCTTAGACGCCTTTTTGCTTCCTCCCGCGCCTTTGCGATCTGGGGCGG
TTGGCTTGATGACCATGCGAGCGGAAAAGGACACTAAGACGTCTAGTAGC
GGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCACCCTCGCCTT
TGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTCTTGGGCTCTA
CCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATCCGTCCAAGCC
GCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGGTAAACAAAGA
CGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGCAAAGAAGCTC
GAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGTCCGCTCCAAG
CGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGACGATTCTGTC
CTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGACGGCAAAGCCC
GCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGACGAAATTGCG
ACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGGAACGTGCAAA
GCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGCTCCATCACGG
AACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAAGGTTCCGGAG
GAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGGTGGATATGAC
GATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAAGGGAAGCTGT
ATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAACGCCCCTGTC
ACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTTATAACAACAG
ACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGTGACCCGGAGC
CTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAAGGAAGTGCGG
AAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCACCAATGTATGG
GACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACGAGATTGCCAT
TCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTATGTGGCGGAC
TCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTGACTTAACGCC
TGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTCGGGTACACGA
TTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGATGTCATCGTG
AGCGCTAAAGTGGCGAAGGGGGCGGAGAACTTGGTGCCGGGGAAGAAGCA
GTAGATGAAAGTTATCCTCTCCTCCGCCGTCTTGGCCTTGGCCCTGGGCC
CCGTCGCCTTAGACGCCTTTTTGCTTCCTCCCGCGCCTTTGCGATCTGGG
GCGGTTGGCTTGATGACCATGCGAGCGGAAAAGGACACTAAGACGTCTAG
TAGCGGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCACCCTCG
CCTTTGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTCTTGGGC
TCTACCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATCCGTCCA
AGCCGCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGGTAAACA
AAGACGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGCAAAGAA
GCTCGAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGTCCGCTC
CAAGCGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGACGATTC
TGTCCTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGACGGCAAA
GCCCGCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGACGAAAT
TGCGACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGGAACGTG
CAAAGCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGCTCCATC
ACGGAACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAAGGTTCC
GGAGGAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGGTGGATA
TGACGATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAAGGGAAG
CTGTATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAACGCCCC
TGTCACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTTATAACA
ACAGACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGTGACCCG
GAGCCTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAAGGAAGT
GCGGAAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCACCAATGT
ATGGGACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACGAGATTG
CCATTCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTATGTGGC
GGACTCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTGACTTAA
CGCCTGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTCGGGTAC
ACGATTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGATGTCAT
CGTGAGCGCTAAAGTGGCGAAGGGGGCGGAGAACTTGGTGCCGGGGAAGA
AGCAGTAG

Synonyms

Publications