jgi.p|Nanoce1779_2|591396, mRNA_5104 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591396
Unique NamemRNA_5104
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1303
Alignment locationscaffold_12:470685..471987 -

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Properties
Property NameValue
TranscriptId591482
TrackFilteredModels2
ProteinId591396
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:470685..471987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591396gene_5104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591396mRNA_5104-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5104CDS_5104Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Nanoce1779_2|591396|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
GGAGGAGGAGACGTAGCAGCAGCGTCCAACTTTGAAGGCGCGCCATCGGA
CAAGCAAGTTCAAAATGCGGGATCTACCGCCAAAGCGGGAAGTGGTACCG
CAGTTGAACATCCCTATATTCACAGAGCCTTGACTTTCGGTGTGCCTGTT
GTGGAACCTGCCGCCATCGTGGAATGTCTTACCAAGGAAGGGATTAATAA
CGACCGCAAGTTCCATTTGACTGGTCGAACACCTCATCTGGTTATGTCCT
TGATTTCCGTCCCCGCTATGACAGCTGCAGTACTGGGTTCCGAGAAGTCT
TCCTTCCCAGTGGTGCGAATGTTGTTGGACTCTCATCGTACCCGAGTGAC
CTCTGCCAGGTGTCCCAGCTTCGGAAATAGCAGCAGCAGCAACAACAAGA
CTATACTCGGCGTTGGCAGTGGTGGTGGTAGTAGTAATATATCTTTTGAT
AGAAATATGGCTGATGCTCTGCAAAAGTATGGACGTGAAGGGGGCGTGCA
TGTGGGAAGGGCGGCCTTGTCGTATCTGATGAAAGAGGTGACGGCACATG
AACTTATTGAGTATAAGGCAGTTCGCACTCTCCGCATGCTGACGCTCGAG
GAGCCTGCCTTCGCCCTGCCCCACGTCCTTGGCACTGATAACTTCCTTTA
TGGGGGAGTCAGAGTGTTAGTATTTGAGTTACTCCAATGTCGGTCCACTT
TTACCAAGTTATGCGTTGAGCGCTGCCTGCCAGAGTTGTTTGCCTTCTTG
TATCGATCTGTGGAAGCTCAATCGGTCGTGTCGTCCCTCGAGATCGTACT
GAGCATCATGGCCTCAGTGCCAGACTTTTTCTCGAGGATTGCGATTTTAA
TAAAGAAAGATCAGGAGGAAAAAGATGATAAAGGACGTGTGTTTGGCGCA
TACGTTCAAGGTCTAGTGAGGCAATGGTCCAGCGACCGTCGCGTGAATCG
TGGGAACAATAAAGCCGTTATTGGACAATTCGCTGCTTTGCTCCGTGTGA
GTGGAGAAGGAGGGGCAGAAGACGATCAAGGGAAAAACGAGAAAGAGGAA
AGCAAACAGGAGTAGTCTTCATAATAAAAATAGTAGTAATAGTAGTGGTT
GTAGTTGTAGTAGAAGTGATACAAGGAGGCTGTACCTGTCATAAAAATCC
CAAAAAGGGACATATAATGTGAGCACCAAAAAAAGCCCGCCCTGCATGAT
GGGGTAGCTGCCGGCATCAGTCCCACTCGTTGGCGCGGGATGACCGGCCG
CCAAAGGAGCGGCTTGTTCAGAGCGGGATGGCGTCATCGTCCCGTGAAAA
CGC
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protein sequence of jgi.p|Nanoce1779_2|591396

>mRNA_5104-protein ID=mRNA_5104-protein|Name=jgi.p|Nanoce1779_2|591396|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MSLISVPAMTAAVLGSEKSSFPVVRMLLDSHRTRVTSARCPSFGNSSSSN
NKTILGVGSGGGSSNISFDRNMADALQKYGREGGVHVGRAALSYLMKEVT
AHELIEYKAVRTLRMLTLEEPAFALPHVLGTDNFLYGGVRVLVFELLQCR
STFTKLCVERCLPELFAFLYRSVEAQSVVSSLEIVLSIMASVPDFFSRIA
ILIKKDQEEKDDKGRVFGAYVQGLVRQWSSDRRVNRGNNKAVIGQFAALL
RVSGEGGAEDDQGKNEKEESKQE*
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mRNA from alignment at scaffold_12:470685..471987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Nanoce1779_2|591396|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at scaffold_12:470685..471987- (Nannochloropsis oceanica)
GGAGGAGGAGACGTAGCAGCAGCGTCCAACTTTGAAGGCGCGCCATCGGA
CAAGCAAGTTCAAAATGCGGGATCTACCGCCAAAGCGGGAAGTGGTACCG
CAGTTGAACATCCCTATATTCACAGAGCCTTGACTTTCGGTGTGCCTGTT
GTGGAACCTGCCGCCATCGTGGAATGTCTTACCAAGGAAGGGATTAATAA
CGACCGCAAGTTCCATTTGACTGGTCGAACACCTCATCTGGTTATGTCCT
TGATTTCCGTCCCCGCTATGACAGCTGCAGTACTGGGTTCCGAGAAGTCT
TCCTTCCCAGTGGTGCGAATGTTGTTGGACTCTCATCGTACCCGAGTGAC
CTCTGCCAGGTGTCCCAGCTTCGGAAATAGCAGCAGCAGCAACAACAAGA
CTATACTCGGCGTTGGCAGTGGTGGTGGTAGTAGTAATATATCTTTTGAT
AGAAATATGGCTGATGCTCTGCAAAAGTATGGACGTGAAGGGGGCGTGCA
TGTGGGAAGGGCGGCCTTGTCGTATCTGATGAAAGAGGTGACGGCACATG
AACTTATTGAGTATAAGGCAGTTCGCACTCTCCGCATGCTGACGCTCGAG
GAGCCTGCCTTCGCCCTGCCCCACGTCCTTGGCACTGATAACTTCCTTTA
TGGGGGAGTCAGAGTGTTAGTATTTGAGTTACTCCAATGTCGGTCCACTT
TTACCAAGTTATGCGTTGAGCGCTGCCTGCCAGAGTTGTTTGCCTTCTTG
TATCGATCTGTGGAAGCTCAATCGGTCGTGTCGTCCCTCGAGATCGTACT
GAGCATCATGGCCTCAGTGCCAGACTTTTTCTCGAGGATTGCGATTTTAA
TAAAGAAAGATCAGGAGGAAAAAGATGATAAAGGACGTGTGTTTGGCGCA
TACGTTCAAGGTCTAGTGAGGCAATGGTCCAGCGACCGTCGCGTGAATCG
TGGGAACAATAAAGCCGTTATTGGACAATTCGCTGCTTTGCTCCGTGTGA
GTGGAGAAGGAGGGGCAGAAGACGATCAAGGGAAAAACGAGAAAGAGGAA
AGCAAACAGGAGTAGTCTTCATAATAAAAATAGTAGTAATAGTAGTGGTT
GTAGTTGTAGTAGAAGTGATACAAGGAGGCTGTACCTGTCATAAAAATCC
CAAAAAGGGACATATAATGTGAGCACCAAAAAAAGCCCGCCCTGCATGAT
GGGGTAGCTGCCGGCATCAGTCCCACTCGTTGGCGCGGGATGACCGGCCG
CCAAAGGAGCGGCTTGTTCAGAGCGGGATGGCGTCATCGTCCCGTGAAAA
CGC
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Coding sequence (CDS) from alignment at scaffold_12:470685..471987-

>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Nanoce1779_2|591396|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_12:470685..471987- (Nannochloropsis oceanica)
ATGTCCTTGATTTCCGTCCCCGCTATGACAGCTGCAGTACTGGGTTCCGA
GAAGTCTTCCTTCCCAGTGGTGCGAATGTTGTTGGACTCTCATCGTACCC
GAGTGACCTCTGCCAGGTGTCCCAGCTTCGGAAATAGCAGCAGCAGCAAC
AACAAGACTATACTCGGCGTTGGCAGTGGTGGTGGTAGTAGTAATATATC
TTTTGATAGAAATATGGCTGATGCTCTGCAAAAGTATGGACGTGAAGGGG
GCGTGCATGTGGGAAGGGCGGCCTTGTCGTATCTGATGAAAGAGGTGACG
GCACATGAACTTATTGAGTATAAGGCAGTTCGCACTCTCCGCATGCTGAC
GCTCGAGGAGCCTGCCTTCGCCCTGCCCCACGTCCTTGGCACTGATAACT
TCCTTTATGGGGGAGTCAGAGTGTTAGTATTTGAGTTACTCCAATGTCGG
TCCACTTTTACCAAGTTATGCGTTGAGCGCTGCCTGCCAGAGTTGTTTGC
CTTCTTGTATCGATCTGTGGAAGCTCAATCGGTCGTGTCGTCCCTCGAGA
TCGTACTGAGCATCATGGCCTCAGTGCCAGACTTTTTCTCGAGGATTGCG
ATTTTAATAAAGAAAGATCAGGAGGAAAAAGATGATAAAGGACGTGTGTT
TGGCGCATACGTTCAAGGTCTAGTGAGGCAATGGTCCAGCGACCGTCGCG
TGAATCGTGGGAACAATAAAGCCGTTATTGGACAATTCGCTGCTTTGCTC
CGTGTGAGTGGAGAAGGAGGGGCAGAAGACGATCAAGGGAAAAACGAGAA
AGAGGAAAGCAAACAGGAGTAG
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Synonyms
Publications